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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000020.1:2295153..2296862+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_53615-T1 ID=CAN33_53615-T1|Name=CAN33_53615-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1710bp|location=Sequence derived from alignment at NKJJ01000020.1:2295153..2296862+ (Aspergillus niger FDAARGOS_311)
ATGGGTGTAATACGGAAGAAGACCGCCTCGCGCGGCACTGAAGCGGGCAC
CAAGTATCACTGTGATATTTGCTCGGTTGATGTGACTTCGACGGTATAGT
CTGCGATCTGTGTCCCAAGGACTTTCGCCTCTTGTCGGTCTTAAACCTAA
CTTATCGGTCTCTTTCTAGGTTCGCGTATCTTGCGCCCATCCCGCCTGCC
ACGAATACGATCTCTGCGTCCCCTGTTTCGCTGCCGGAGAGAAATCCAAG
AACCATGACCCGTCGACACATCCGTTCCAGGTGATCGAACAGAACTCGGT
CCCGATCTTCGAGGAAGACTGGGGTGCGGACGAGGAGCTCCTGCTGCTGG
AAGGCGCCGAGATCTACGGACTGGGCTCATGGGCGGACATTGCAGACCAC
ATTGGCGGTTACCGCACCAAGGAGGAGGTCCGCGACCACTACATCAGCGC
CTATATCGATAGTCCAAACTTCCCGTTACCGGAACGCGCCGATCCGGATG
ACAAGCGCCTCTCGGAGGCCATTTCGAAGGAAGAATTCCAGGCGCGGAAG
AAACGCCGCATTGAGGAGCGCAAAGAAGCGGCCAAGGCAGCTCCCCCCAC
AACACCGAAGCAGAAGCCTACGGCCAGTGTACCGGCTTGTCACGAAGTGC
AGGGTTACATGCCGGGTCGGTTGGAGTTCGAGACAGAGTTTATGAACGAA
GCCGAGGAAGCGGTACAGCATATGACATTTGAGCCTGGCGCGGGCGAGAC
AGCGAACGGCGAGACGGACGCGGAAATGGAACTGAAAATGACCGTAGTGG
ATATCTATAACTCACGGCTTACGGCGCGCACGGAGCGCAAGAAGATCCTT
TTCGAGCACAATCTCCTCGAGTACCGTAAAAACACGGCGCTGGAGAAGAA
GCGCACGAAAGAGGAGCGCGATCTGCTGAACAAGGCGAAGCCGTTTGCCC
GGATGATGAACCACGATGATTTCGAAGAGTTCAACAAGGGTCTTGAGTAC
GAGCACAACCTGCGGCTAGCCATCACGCAGCTCCAGGAATGGCGCCAGAT
GGGAATTGGCGATCTCAAGGGTGGAGAGAAATACGAACAGGAGAAGCAAC
AGCGGGCACAGCGGCTGATGCCGCAGGGCTCATTCGATCGGTTCGCCAGC
ACGCGACCGACGAAGCAGTCGCAGCAACCAGAACAGCCATCGGCCGCGAG
TCAGCTGACGACCCCGGAGCTCCCTCTCCGGTTACAAAAGGCGTCTGGGG
CGCCTAAGGCACCAGAGCCTCCCAACCCGCCGATGAATGATTTTGATCGG
GCGTTTGCCGCCACCAATGGCGACGGGATCAGCACGCCGCAGCCAGTGAA
GACCAAGTTCGTGATCCAGCCACTAAACGGAGTGATTCCGTGGAAACTGG
AGAACGAGGGAGCACCGGATTTGCACCTGCTGACAAAGGAGGAAGTCGAG
GTGTGCAATGTGCTGCACATGCAGCCCAAGCCATACCTGGTAATTAAGGA
GACGTTATTGAAAGAGGCGATGAAGCAGGGCGGCAGTTTAAAGAAGAAGG
ACGCGCGAGCTATTTGCAAGGTCAGTCGCCTTTCCCCCCCCCTTCTGCCA
GCAACAGGAGACGTATGGGTGTCTGACAAAGATTTCTACAGGTCGACAGT
ACCAAGACGAGTCGGATCTACGATTTCATGGTACACAGCGGCTGGATCAA
CAAGAGCTGA back to topCoding sequence (CDS) from alignment at NKJJ01000020.1:2295153..2296862+ >CAN33_53615-T1 ID=CAN33_53615-T1|Name=CAN33_53615-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=4689bp|location=Sequence derived from alignment at NKJJ01000020.1:2295153..2296862+ (Aspergillus niger FDAARGOS_311)
ATGGGTGTAATACGGAAGAAGACCGCCTCGCGCGGCACTGAAGCGGGCAC
CAAGTATCACTGTGATATTTGCTCGGTTGATGTGACTTCGACGGTTCGCG
TATCTTGCGCCCATCCCGCCTGCCACGAATACGATCTCTGCGTCCCCTGT
TTCGCTGCCGGAGAGAAATCCAAGAACCATGACCCGTCGACACATCCGTT
CCAGGTGATCGAACAGAACTCGGTCCCGATCTTCGAGGAAGACTGGGGTG
CGGACGAGGAGCTCCTGCTGCTGGAAGGCGCCGAGATCTACGGACTGGGC
TCATGGGCGGACATTGCAGACCACATTGGCGGTTACCGCACCAAGGAGGA
GGTCCGCGACCACTACATCAGCGCCTATATCGATAGTCCAAACTTCCCGT
TACCGGAACGCGCCGATCCGGATGACAAGCGCCTCTCGGAGGCCATTTCG
AAGGAAGAATTCCAGGCGCGGAAGAAACGCCGCATTGAGGAGCGCAAAGA
AGCGGCCAAGGCAGCTCCCCCCACAACACCGAAGCAGAAGCCTACGGCCA
GTGTACCGGCTTGTCACGAAGTGCAGGGTTACATGCCGGGTCGGTTGGAG
TTCGAGACAGAGTTTATGAACGAAGCCGAGGAAGCGGTACAGCATATGAC
ATTTGAGCCTGGCGCGGGCGAGACAGCGAACGGCGAGACGGACGCGGAAA
TGGAACTGAAAATGACCGTAGTGGATATCTATAACTCACGGCTTACGGCG
CGCACGGAGCGCAAGAAGATCCTTTTCGAGCACAATCTCCTCGAGTACCG
TAAAAACACGGCGCTGGAGAAGAAGCGCACGAAAGAGGAGCGCGATCTGC
TGAACAAGGCGAAGCCGTTTGCCCGGATGATGAACCACGATGATTTCGAA
GAGTTCAACAAGGGTCTTGAGTACGAGCACAACCTGCGGCTAGCCATCAC
GCAGCTCCAGGAATGGCGCCAGATGGGAATTGGCGATCTCAAGGGTGGAG
AGAAATACGAACAGGAGAAGCAACAGCGGGCACAGCGGCTGATGCCGCAG
GGCTCATTCGATCGGTTCGCCAGCACGCGACCGACGAAGCAGTCGCAGCA
ACCAGAACAGCCATCGGCCGCGAGTCAGCTGACGACCCCGGAGCTCCCTC
TCCGGTTACAAAAGGCGTCTGGGGCGCCTAAGGCACCAGAGCCTCCCAAC
CCGCCGATGAATGATTTTGATCGGGCGTTTGCCGCCACCAATGGCGACGG
GATCAGCACGCCGCAGCCAGTGAAGACCAAGTTCGTGATCCAGCCACTAA
ACGGAGTGATTCCGTGGAAACTGGAGAACGAGGGAGCACCGGATTTGCAC
CTGCTGACAAAGGAGGAAGTCGAGGTGTGCAATGTGCTGCACATGCAGCC
CAAGCCATACCTGGTAATTAAGGAGACGTTATTGAAAGAGGCGATGAAGC
AGGGCGGCAGTTTAAAGAAGAAGGACGCGCGAGCTATTTGCAAGGTCGAC
AGTACCAAGACGAGTCGGATCTACGATTTCATGGTACACAGCGGCTGGAT
CAACAAGAGCTGAATGGGTGTAATACGGAAGAAGACCGCCTCGCGCGGCA
CTGAAGCGGGCACCAAGTATCACTGTGATATTTGCTCGGTTGATGTGACT
TCGACGGTTCGCGTATCTTGCGCCCATCCCGCCTGCCACGAATACGATCT
CTGCGTCCCCTGTTTCGCTGCCGGAGAGAAATCCAAGAACCATGACCCGT
CGACACATCCGTTCCAGGTGATCGAACAGAACTCGGTCCCGATCTTCGAG
GAAGACTGGGGTGCGGACGAGGAGCTCCTGCTGCTGGAAGGCGCCGAGAT
CTACGGACTGGGCTCATGGGCGGACATTGCAGACCACATTGGCGGTTACC
GCACCAAGGAGGAGGTCCGCGACCACTACATCAGCGCCTATATCGATAGT
CCAAACTTCCCGTTACCGGAACGCGCCGATCCGGATGACAAGCGCCTCTC
GGAGGCCATTTCGAAGGAAGAATTCCAGGCGCGGAAGAAACGCCGCATTG
AGGAGCGCAAAGAAGCGGCCAAGGCAGCTCCCCCCACAACACCGAAGCAG
AAGCCTACGGCCAGTGTACCGGCTTGTCACGAAGTGCAGGGTTACATGCC
GGGTCGGTTGGAGTTCGAGACAGAGTTTATGAACGAAGCCGAGGAAGCGG
TACAGCATATGACATTTGAGCCTGGCGCGGGCGAGACAGCGAACGGCGAG
ACGGACGCGGAAATGGAACTGAAAATGACCGTAGTGGATATCTATAACTC
ACGGCTTACGGCGCGCACGGAGCGCAAGAAGATCCTTTTCGAGCACAATC
TCCTCGAGTACCGTAAAAACACGGCGCTGGAGAAGAAGCGCACGAAAGAG
GAGCGCGATCTGCTGAACAAGGCGAAGCCGTTTGCCCGGATGATGAACCA
CGATGATTTCGAAGAGTTCAACAAGGGTCTTGAGTACGAGCACAACCTGC
GGCTAGCCATCACGCAGCTCCAGGAATGGCGCCAGATGGGAATTGGCGAT
CTCAAGGGTGGAGAGAAATACGAACAGGAGAAGCAACAGCGGGCACAGCG
GCTGATGCCGCAGGGCTCATTCGATCGGTTCGCCAGCACGCGACCGACGA
AGCAGTCGCAGCAACCAGAACAGCCATCGGCCGCGAGTCAGCTGACGACC
CCGGAGCTCCCTCTCCGGTTACAAAAGGCGTCTGGGGCGCCTAAGGCACC
AGAGCCTCCCAACCCGCCGATGAATGATTTTGATCGGGCGTTTGCCGCCA
CCAATGGCGACGGGATCAGCACGCCGCAGCCAGTGAAGACCAAGTTCGTG
ATCCAGCCACTAAACGGAGTGATTCCGTGGAAACTGGAGAACGAGGGAGC
ACCGGATTTGCACCTGCTGACAAAGGAGGAAGTCGAGGTGTGCAATGTGC
TGCACATGCAGCCCAAGCCATACCTGGTAATTAAGGAGACGTTATTGAAA
GAGGCGATGAAGCAGGGCGGCAGTTTAAAGAAGAAGGACGCGCGAGCTAT
TTGCAAGGTCGACAGTACCAAGACGAGTCGGATCTACGATTTCATGGTAC
ACAGCGGCTGGATCAACAAGAGCTGAATGGGTGTAATACGGAAGAAGACC
GCCTCGCGCGGCACTGAAGCGGGCACCAAGTATCACTGTGATATTTGCTC
GGTTGATGTGACTTCGACGGTTCGCGTATCTTGCGCCCATCCCGCCTGCC
ACGAATACGATCTCTGCGTCCCCTGTTTCGCTGCCGGAGAGAAATCCAAG
AACCATGACCCGTCGACACATCCGTTCCAGGTGATCGAACAGAACTCGGT
CCCGATCTTCGAGGAAGACTGGGGTGCGGACGAGGAGCTCCTGCTGCTGG
AAGGCGCCGAGATCTACGGACTGGGCTCATGGGCGGACATTGCAGACCAC
ATTGGCGGTTACCGCACCAAGGAGGAGGTCCGCGACCACTACATCAGCGC
CTATATCGATAGTCCAAACTTCCCGTTACCGGAACGCGCCGATCCGGATG
ACAAGCGCCTCTCGGAGGCCATTTCGAAGGAAGAATTCCAGGCGCGGAAG
AAACGCCGCATTGAGGAGCGCAAAGAAGCGGCCAAGGCAGCTCCCCCCAC
AACACCGAAGCAGAAGCCTACGGCCAGTGTACCGGCTTGTCACGAAGTGC
AGGGTTACATGCCGGGTCGGTTGGAGTTCGAGACAGAGTTTATGAACGAA
GCCGAGGAAGCGGTACAGCATATGACATTTGAGCCTGGCGCGGGCGAGAC
AGCGAACGGCGAGACGGACGCGGAAATGGAACTGAAAATGACCGTAGTGG
ATATCTATAACTCACGGCTTACGGCGCGCACGGAGCGCAAGAAGATCCTT
TTCGAGCACAATCTCCTCGAGTACCGTAAAAACACGGCGCTGGAGAAGAA
GCGCACGAAAGAGGAGCGCGATCTGCTGAACAAGGCGAAGCCGTTTGCCC
GGATGATGAACCACGATGATTTCGAAGAGTTCAACAAGGGTCTTGAGTAC
GAGCACAACCTGCGGCTAGCCATCACGCAGCTCCAGGAATGGCGCCAGAT
GGGAATTGGCGATCTCAAGGGTGGAGAGAAATACGAACAGGAGAAGCAAC
AGCGGGCACAGCGGCTGATGCCGCAGGGCTCATTCGATCGGTTCGCCAGC
ACGCGACCGACGAAGCAGTCGCAGCAACCAGAACAGCCATCGGCCGCGAG
TCAGCTGACGACCCCGGAGCTCCCTCTCCGGTTACAAAAGGCGTCTGGGG
CGCCTAAGGCACCAGAGCCTCCCAACCCGCCGATGAATGATTTTGATCGG
GCGTTTGCCGCCACCAATGGCGACGGGATCAGCACGCCGCAGCCAGTGAA
GACCAAGTTCGTGATCCAGCCACTAAACGGAGTGATTCCGTGGAAACTGG
AGAACGAGGGAGCACCGGATTTGCACCTGCTGACAAAGGAGGAAGTCGAG
GTGTGCAATGTGCTGCACATGCAGCCCAAGCCATACCTGGTAATTAAGGA
GACGTTATTGAAAGAGGCGATGAAGCAGGGCGGCAGTTTAAAGAAGAAGG
ACGCGCGAGCTATTTGCAAGGTCGACAGTACCAAGACGAGTCGGATCTAC
GATTTCATGGTACACAGCGGCTGGATCAACAAGAGCTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006357 | regulation of transcription by RNA polymerase II |
| GO:0035065 | regulation of histone acetylation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0003713 | transcription coactivator activity |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009057 |
| DBxref | InterPro:IPR041983 |
| DBxref | InterPro:IPR017884 |
| DBxref | InterPro:IPR016827 |
| DBxref | InterPro:IPR007526 |
| DBxref | InterPro:IPR001005 |
| DBxref | InterPro:IPR000433 |
| DBxref | PFAM:PF00569 |
| DBxref | PFAM:PF04433 |
| DBxref | PFAM:PF00249 |
| Product | SWIRM domain family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000020.1 | supercontig | NKJJ01000020.1:2295153..2296862 + |
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