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CAN33_5410-T1, CAN33_5410-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_5410-T1
Unique NameCAN33_5410-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000019.1:1004926..1006181-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_5410-T1 ID=CAN33_5410-T1|Name=CAN33_5410-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1256bp|location=Sequence derived from alignment at NKJJ01000019.1:1004926..1006181- (Aspergillus niger FDAARGOS_311)
ATGCCTCCTGCTCGTGATATCATGGCTCACCGGGGGATGACGACGGTGAG
TCTATTGCTAATGACACTTGAATATTCACTGACTGCCAGCAGAGGTGTGC
CCTGTCTGCAAATCCTCCCGTTACCTGAACCCAGACATGCGATTTCTCAT
CAATCCCGAATGCTACCACAAGATGTGCGAGTCCTGCGTGGACCGAATCT
TCTCCTCAGGCCCTGCGAACTGTCCCGTGGCGGGCTGTCACAAGACCCTG
CGCAAGAACCGATTTCGCAAGCAGACATTCGAGGATATTAATGTGGAAAG
AGAGGTGGACATTCGGCGCAGAGTAATGCAAATGTATGCCAATATCAAAT
TTGCTAGACCCTGGAATAAGCCACTAATCTTCCTCTAGTCTTAACCGCCG
CGAAGAAGAGTTTGATTCGAAACGAGCCTATGATGACTTCCTCGAACAAC
GCGAAGAGATAATAGCGAACCTTGTCCATGGCACAGATGTGGCGAAGACA
GAAAGCGACCTACAAAGATATGCTGCAGACAACATGCGGTCGATTCGCGC
CAATCAAGCCCTCGAAGCGCAAGAGGCCTCATCCTTCCGAGAACAACAAA
CACACGAACAAGAACTGGCACGTCTTCGGCGAGAGGCAGCTAGACTGGAA
TATGAGAACGAACGGAAGGAGATGCTTGCCGGCCGGGAAGACGTTCTCAG
CCGTCTTGCGGCAGGTCGACCTGGCGACGCAGCGGCTATCGCCCGCGAAG
GTCACAAGGTGCTGCTTAAGAAATCTTCTGCTCGCCGCAGTGAAGAAGAC
CGGATTCGACAGAAGCAGGCTGCTTTGCGCAGCTCAGATGCCAGGAAAGC
TGGGCAGGGCGCCCTTACCACGGCGGACAGGGCGGATGACAGTGGTGATT
CTGGCTTGATCAAGGGTCTTAAGAAGATTGTGACGCCCGAGCCTGAGAAG
CCTTATGATCCTTTTGGTGGCCTTGTTCCCAACAAGAGGGACTACTATAC
TCTGCGCGACTATTACCCGAACAGCTATCTCGACCCCATTCGCCAGGACA
CTCGTATGCAGGCTGGTGGATACGACCTTCAGGAATACTACTCGCGTACT
TTGATGGAGGCCTTTGCGGGTTTGGGTTGCTTCATCGATGAGGAGGTGTC
TAAGCGAGAGGTTACAAGTACGATGGGTATCTCTAGACCCGTCGCTACAG
AAGGGGCTGCCTTGGCGGCTGTTTCAAGTGCAGGCGCCCCAGAAGCCAGC
TCGTGA
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Coding sequence (CDS) from alignment at NKJJ01000019.1:1004926..1006181-

>CAN33_5410-T1 ID=CAN33_5410-T1|Name=CAN33_5410-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3456bp|location=Sequence derived from alignment at NKJJ01000019.1:1004926..1006181- (Aspergillus niger FDAARGOS_311)
TCTTAACCGCCGCGAAGAAGAGTTTGATTCGAAACGAGCCTATGATGACT
TCCTCGAACAACGCGAAGAGATAATAGCGAACCTTGTCCATGGCACAGAT
GTGGCGAAGACAGAAAGCGACCTACAAAGATATGCTGCAGACAACATGCG
GTCGATTCGCGCCAATCAAGCCCTCGAAGCGCAAGAGGCCTCATCCTTCC
GAGAACAACAAACACACGAACAAGAACTGGCACGTCTTCGGCGAGAGGCA
GCTAGACTGGAATATGAGAACGAACGGAAGGAGATGCTTGCCGGCCGGGA
AGACGTTCTCAGCCGTCTTGCGGCAGGTCGACCTGGCGACGCAGCGGCTA
TCGCCCGCGAAGGTCACAAGGTGCTGCTTAAGAAATCTTCTGCTCGCCGC
AGTGAAGAAGACCGGATTCGACAGAAGCAGGCTGCTTTGCGCAGCTCAGA
TGCCAGGAAAGCTGGGCAGGGCGCCCTTACCACGGCGGACAGGGCGGATG
ACAGTGGTGATTCTGGCTTGATCAAGGGTCTTAAGAAGATTGTGACGCCC
GAGCCTGAGAAGCCTTATGATCCTTTTGGTGGCCTTGTTCCCAACAAGAG
GGACTACTATACTCTGCGCGACTATTACCCGAACAGCTATCTCGACCCCA
TTCGCCAGGACACTCGTATGCAGGCTGGTGGATACGACCTTCAGGAATAC
TACTCGCGTACTTTGATGGAGGCCTTTGCGGGTTTGGGTTGCTTCATCGA
TGAGGAGGTGTCTAAGCGAGAGGTTACAAGTACGATGGGTATCTCTAGAC
CCGTCGCTACAGAAGGGGCTGCCTTGGCGGCTGTTTCAAGTGCAGGCGCC
CCAGAAGCCAGCTCGTGAGTGTGCCCTGTCTGCAAATCCTCCCGTTACCT
GAACCCAGACATGCGATTTCTCATCAATCCCGAATGCTACCACAAGATGT
GCGAGTCCTGCGTGGACCGAATCTTCTCCTCAGGCCCTGCGAACTGTCCC
GTGGCGGGCTGTCACAAGACCCTGCGCAAGAACCGATTTCGCAAGCAGAC
ATTCGAGGATATTAATGTGGAAAGAGAGGTGGACATTCGGCGCAGAGTAA
TGCAAATATGCCTCCTGCTCGTGATATCATGGCTCACCGGGGGATGACGA
CGTCTTAACCGCCGCGAAGAAGAGTTTGATTCGAAACGAGCCTATGATGA
CTTCCTCGAACAACGCGAAGAGATAATAGCGAACCTTGTCCATGGCACAG
ATGTGGCGAAGACAGAAAGCGACCTACAAAGATATGCTGCAGACAACATG
CGGTCGATTCGCGCCAATCAAGCCCTCGAAGCGCAAGAGGCCTCATCCTT
CCGAGAACAACAAACACACGAACAAGAACTGGCACGTCTTCGGCGAGAGG
CAGCTAGACTGGAATATGAGAACGAACGGAAGGAGATGCTTGCCGGCCGG
GAAGACGTTCTCAGCCGTCTTGCGGCAGGTCGACCTGGCGACGCAGCGGC
TATCGCCCGCGAAGGTCACAAGGTGCTGCTTAAGAAATCTTCTGCTCGCC
GCAGTGAAGAAGACCGGATTCGACAGAAGCAGGCTGCTTTGCGCAGCTCA
GATGCCAGGAAAGCTGGGCAGGGCGCCCTTACCACGGCGGACAGGGCGGA
TGACAGTGGTGATTCTGGCTTGATCAAGGGTCTTAAGAAGATTGTGACGC
CCGAGCCTGAGAAGCCTTATGATCCTTTTGGTGGCCTTGTTCCCAACAAG
AGGGACTACTATACTCTGCGCGACTATTACCCGAACAGCTATCTCGACCC
CATTCGCCAGGACACTCGTATGCAGGCTGGTGGATACGACCTTCAGGAAT
ACTACTCGCGTACTTTGATGGAGGCCTTTGCGGGTTTGGGTTGCTTCATC
GATGAGGAGGTGTCTAAGCGAGAGGTTACAAGTACGATGGGTATCTCTAG
ACCCGTCGCTACAGAAGGGGCTGCCTTGGCGGCTGTTTCAAGTGCAGGCG
CCCCAGAAGCCAGCTCGTGAGTGTGCCCTGTCTGCAAATCCTCCCGTTAC
CTGAACCCAGACATGCGATTTCTCATCAATCCCGAATGCTACCACAAGAT
GTGCGAGTCCTGCGTGGACCGAATCTTCTCCTCAGGCCCTGCGAACTGTC
CCGTGGCGGGCTGTCACAAGACCCTGCGCAAGAACCGATTTCGCAAGCAG
ACATTCGAGGATATTAATGTGGAAAGAGAGGTGGACATTCGGCGCAGAGT
AATGCAAATATGCCTCCTGCTCGTGATATCATGGCTCACCGGGGGATGAC
GACGTCTTAACCGCCGCGAAGAAGAGTTTGATTCGAAACGAGCCTATGAT
GACTTCCTCGAACAACGCGAAGAGATAATAGCGAACCTTGTCCATGGCAC
AGATGTGGCGAAGACAGAAAGCGACCTACAAAGATATGCTGCAGACAACA
TGCGGTCGATTCGCGCCAATCAAGCCCTCGAAGCGCAAGAGGCCTCATCC
TTCCGAGAACAACAAACACACGAACAAGAACTGGCACGTCTTCGGCGAGA
GGCAGCTAGACTGGAATATGAGAACGAACGGAAGGAGATGCTTGCCGGCC
GGGAAGACGTTCTCAGCCGTCTTGCGGCAGGTCGACCTGGCGACGCAGCG
GCTATCGCCCGCGAAGGTCACAAGGTGCTGCTTAAGAAATCTTCTGCTCG
CCGCAGTGAAGAAGACCGGATTCGACAGAAGCAGGCTGCTTTGCGCAGCT
CAGATGCCAGGAAAGCTGGGCAGGGCGCCCTTACCACGGCGGACAGGGCG
GATGACAGTGGTGATTCTGGCTTGATCAAGGGTCTTAAGAAGATTGTGAC
GCCCGAGCCTGAGAAGCCTTATGATCCTTTTGGTGGCCTTGTTCCCAACA
AGAGGGACTACTATACTCTGCGCGACTATTACCCGAACAGCTATCTCGAC
CCCATTCGCCAGGACACTCGTATGCAGGCTGGTGGATACGACCTTCAGGA
ATACTACTCGCGTACTTTGATGGAGGCCTTTGCGGGTTTGGGTTGCTTCA
TCGATGAGGAGGTGTCTAAGCGAGAGGTTACAAGTACGATGGGTATCTCT
AGACCCGTCGCTACAGAAGGGGCTGCCTTGGCGGCTGTTTCAAGTGCAGG
CGCCCCAGAAGCCAGCTCGTGAGTGTGCCCTGTCTGCAAATCCTCCCGTT
ACCTGAACCCAGACATGCGATTTCTCATCAATCCCGAATGCTACCACAAG
ATGTGCGAGTCCTGCGTGGACCGAATCTTCTCCTCAGGCCCTGCGAACTG
TCCCGTGGCGGGCTGTCACAAGACCCTGCGCAAGAACCGATTTCGCAAGC
AGACATTCGAGGATATTAATGTGGAAAGAGAGGTGGACATTCGGCGCAGA
GTAATGCAAATATGCCTCCTGCTCGTGATATCATGGCTCACCGGGGGATG
ACGACG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005675transcription factor TFIIH holo complex
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0045737positive regulation of cyclin-dependent protein serine/threonine kinase activity
Vocabulary: Molecular Function
TermDefinition
GO:0061575cyclin-dependent protein serine/threonine kinase activator activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_5410CAN33_5410Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_5410-T1CAN33_5410-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_5410-T1.cdsCAN33_5410-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_5410-T1.exon3CAN33_5410-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_5410-T1.exon2CAN33_5410-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_5410-T1.exon1CAN33_5410-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG092649XV
DBxrefInterPro:IPR017907
DBxrefInterPro:IPR015877
DBxrefInterPro:IPR001841
DBxrefInterPro:IPR013083
DBxrefInterPro:IPR004575
DBxrefPFAM:PF17121
DBxrefPFAM:PF06391
ProductCDK-activating kinase assembly factor MAT1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000019.1supercontigNKJJ01000019.1:1004926..1006181 -
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