|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000020.1:2680973..2682024+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_54220-T1 ID=CAN33_54220-T1|Name=CAN33_54220-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1052bp|location=Sequence derived from alignment at NKJJ01000020.1:2680973..2682024+ (Aspergillus niger FDAARGOS_311)
ATGGTCACAGCAACAAGACAGCGGAAATTCCCCGCTGAGCAACAACAATC
CTCGACAGAGCCCGAAGTCAATGGATCGAATGGAAAGCGCAAGTCCGAAC
CCGTGGGCGCTGAACCCACTGAGACTCAGAGCAAGAACAAGCGGCGGAAG
AGAAGCAGTCTAGAGGCGACGACACAAGAATCGGAGAGCAAACCTTCGAG
TAACAAGAAGTCGAAGAAGATGACGGAACCGACTGAGGAGCCTGAGGAAC
AGCAAGAGGAGGAAAAGAAACCTTCAGCAGCGCCGGCGGCGAAGAAGCAC
TTCCGCTTTGATAGCGAGGAGCCGGAAATCCCGGAGGTTGCGGCTGTTGA
GGATACCACGGAGGCGCAACAGGATCAGGATGATGAGAGCAGTGATGATG
ATGAGGCCCCAGAGACGGTCGACAACTCTGCACAGCTGTCGAAGATGAGG
ATGGAAGCTAAGAAGCAGGAACGGGCTAGGCAAATGTGAGTGATGCGCGC
GATTTCAGCCTTGGTGCTGTTTCTGGATACGATTCTAACGTTTTCTACAG
AGAGGAGCAATTGAAGCGGGACAAACGGAAACAGTTGGATGAGTTGCGCA
AATCCCAGGCGAAGTTGGCGAAGAAAAAGGAAGCAAAGGCCGAAGATCTG
TTGTCGGAAAGCACAGAGACCCTCCAAGGAACTACTACGCAAGATGCACG
ACGCTCGGCCCTCCCTGCTCTTCTTCCCGATGATATCCTCAATGCGGCCC
CCGATGTCCGGCCCCCGACACCTCCCGCGGAAGAGAGGACTATCATGCAG
AAGAAGCCCAACAAGCTACGATTCTTGGACAAGAAGGAGAAGCCGCCGAA
GGATGCGCGGGTGGGAGATGTTACTATCCGGGTGTTGGATGATGGTGTAT
CCAAAAAGCCCTCAAAGACGGTTCTGCCGCCTAAGGCCTCAAAAACCGGG
CGCAATGCCAAGCAGAATTGGCTGAACAAATCCCGCAACACAGGCGCTTT
GAATGGGTTGAGAAGGACGACTGGCGGTTCCTCGGGATTCGTGCGCAAAT
AG back to topCoding sequence (CDS) from alignment at NKJJ01000020.1:2680973..2682024+ >CAN33_54220-T1 ID=CAN33_54220-T1|Name=CAN33_54220-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1974bp|location=Sequence derived from alignment at NKJJ01000020.1:2680973..2682024+ (Aspergillus niger FDAARGOS_311)
ATGGTCACAGCAACAAGACAGCGGAAATTCCCCGCTGAGCAACAACAATC
CTCGACAGAGCCCGAAGTCAATGGATCGAATGGAAAGCGCAAGTCCGAAC
CCGTGGGCGCTGAACCCACTGAGACTCAGAGCAAGAACAAGCGGCGGAAG
AGAAGCAGTCTAGAGGCGACGACACAAGAATCGGAGAGCAAACCTTCGAG
TAACAAGAAGTCGAAGAAGATGACGGAACCGACTGAGGAGCCTGAGGAAC
AGCAAGAGGAGGAAAAGAAACCTTCAGCAGCGCCGGCGGCGAAGAAGCAC
TTCCGCTTTGATAGCGAGGAGCCGGAAATCCCGGAGGTTGCGGCTGTTGA
GGATACCACGGAGGCGCAACAGGATCAGGATGATGAGAGCAGTGATGATG
ATGAGGCCCCAGAGACGGTCGACAACTCTGCACAGCTGTCGAAGATGAGG
ATGGAAGCTAAGAAGCAGGAACGGGCTAGGCAAATAGAGGAGCAATTGAA
GCGGGACAAACGGAAACAGTTGGATGAGTTGCGCAAATCCCAGGCGAAGT
TGGCGAAGAAAAAGGAAGCAAAGGCCGAAGATCTGTTGTCGGAAAGCACA
GAGACCCTCCAAGGAACTACTACGCAAGATGCACGACGCTCGGCCCTCCC
TGCTCTTCTTCCCGATGATATCCTCAATGCGGCCCCCGATGTCCGGCCCC
CGACACCTCCCGCGGAAGAGAGGACTATCATGCAGAAGAAGCCCAACAAG
CTACGATTCTTGGACAAGAAGGAGAAGCCGCCGAAGGATGCGCGGGTGGG
AGATGTTACTATCCGGGTGTTGGATGATGGTGTATCCAAAAAGCCCTCAA
AGACGGTTCTGCCGCCTAAGGCCTCAAAAACCGGGCGCAATGCCAAGCAG
AATTGGCTGAACAAATCCCGCAACACAGGCGCTTTGAATGGGTTGAGAAG
GACGACTGGCGGTTCCTCGGGATTCGTGCGCAAATAGATGGTCACAGCAA
CAAGACAGCGGAAATTCCCCGCTGAGCAACAACAATCCTCGACAGAGCCC
GAAGTCAATGGATCGAATGGAAAGCGCAAGTCCGAACCCGTGGGCGCTGA
ACCCACTGAGACTCAGAGCAAGAACAAGCGGCGGAAGAGAAGCAGTCTAG
AGGCGACGACACAAGAATCGGAGAGCAAACCTTCGAGTAACAAGAAGTCG
AAGAAGATGACGGAACCGACTGAGGAGCCTGAGGAACAGCAAGAGGAGGA
AAAGAAACCTTCAGCAGCGCCGGCGGCGAAGAAGCACTTCCGCTTTGATA
GCGAGGAGCCGGAAATCCCGGAGGTTGCGGCTGTTGAGGATACCACGGAG
GCGCAACAGGATCAGGATGATGAGAGCAGTGATGATGATGAGGCCCCAGA
GACGGTCGACAACTCTGCACAGCTGTCGAAGATGAGGATGGAAGCTAAGA
AGCAGGAACGGGCTAGGCAAATAGAGGAGCAATTGAAGCGGGACAAACGG
AAACAGTTGGATGAGTTGCGCAAATCCCAGGCGAAGTTGGCGAAGAAAAA
GGAAGCAAAGGCCGAAGATCTGTTGTCGGAAAGCACAGAGACCCTCCAAG
GAACTACTACGCAAGATGCACGACGCTCGGCCCTCCCTGCTCTTCTTCCC
GATGATATCCTCAATGCGGCCCCCGATGTCCGGCCCCCGACACCTCCCGC
GGAAGAGAGGACTATCATGCAGAAGAAGCCCAACAAGCTACGATTCTTGG
ACAAGAAGGAGAAGCCGCCGAAGGATGCGCGGGTGGGAGATGTTACTATC
CGGGTGTTGGATGATGGTGTATCCAAAAAGCCCTCAAAGACGGTTCTGCC
GCCTAAGGCCTCAAAAACCGGGCGCAATGCCAAGCAGAATTGGCTGAACA
AATCCCGCAACACAGGCGCTTTGAATGGGTTGAGAAGGACGACTGGCGGT
TCCTCGGGATTCGTGCGCAAATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006364 | rRNA processing |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030515 | snoRNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013268 |
| DBxref | PFAM:PF08297 |
| Product | U3 snoRNA associated family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000020.1 | supercontig | NKJJ01000020.1:2680973..2682024 + |
|
