You are here

Home

CAN33_54615-T1, CAN33_54615-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_54615-T1
Unique NameCAN33_54615-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:2942741..2944229+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_54615-T1 ID=CAN33_54615-T1|Name=CAN33_54615-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1489bp|location=Sequence derived from alignment at NKJJ01000020.1:2942741..2944229+ (Aspergillus niger FDAARGOS_311)
ATGGCCACCGATCCCTCCCTGCAAGATCCTCTCCTCTCGCTCCGTCGCGC
CATCGCAGCCGGCAACCTCCCCACGCCAACAACCTCCAGCGACCTCTCCG
ACCAAAATGCGACCGACGACCTTGCAAAAGCCACCCATCTCTACTTCCAA
CATCCCCTCCCTCAAACAATCCCCCTCACAACACCCACCCGCTTCGTCTC
CAGCTCCTCCGACTCCGCCGTCGACCTCCGCAGTATCTTCTTCGCGTGGC
AGAAGAAAGATGTCGCCATTCCAGAGTACATTGCCTCGGCGCAGGAGCTT
AACGAGTCGCTGAAGCAAAAGGAGCGCAAGGAAGGCGAGGAAGAGGAGAA
AGTTCAGAACTTGGTTTTCGTCGAGCGCTTGGATCTTCTGACTTGGCTGG
AGGGCGCGTCTGATGAGAGTGAATACATCAAGCCGTTGGAGGGTGCGGCT
GCTGCGGCCGCGGCTGCGGCTTCCGCTGCTGCTCAGGCGCAGGCGTCGGC
GAATATTGCTTCGGGGGCTGCTGGTGGAGTTTCTGCTGTGCCGAGTGGTG
CTCCTGGGGGTGGTGCTGCTGCTGCGCAGACTCAGCAGGGTAGGGCGGCC
AAGGTCATTGATCCTAGGTTGCAGGAGATTTATAACGGAGAGCGGAAGAT
GGGGGATCGGAATAGTGTGCTACGGGGAATCAAGCCGACGGTATGTTCAT
GCACAGGGGGAAGAGGCTCTACAGTATGCTAATAAGGGATCAACGTAGGA
CTTCTCTCACGTCCGCAAAACCGCCGAATCTATGCTTGGACGCAACCGCT
CCCGGCCGGGACAATACCCTGCTGGCGTGAAAGCCGGCAGCAAGCCGCAA
TCCATGGTGGTGCCGTCTCCATCGGCCGGCCTGTCCCAGCCACGCAAGGC
AAGCAAGACGCAAGACCCCATCATCCTCCTCTCACCCTCGGCCTCATCGC
TCATCCGCATGTCCAACGTGCGCTCCTTCCTGCAGGATGGTGTCTTCATC
CCTCCCGATCACCCTACTCTTTCCATGTCCAACTCCAATATCCTCTACAT
CTCCCGTCCGCTGCGCATGCACTCGGACCCGTCCAGCTCCTCTCTTCGTC
CTGGCGGTGGCAGCTCCTCGCAAGTCACGTCCCGGAAACCTACACGCTTC
ATCCTCGTCGATAGCACGGCCAACTTCCGTCCGGATTACTGGCAGCGTCT
GGTTGCCGTTTTCACGACGGGTCAGACCTGGCAGTTCAAGTCATACAAGT
GGTCTTCGCCACCGGAGCTCTTCAAGCATGCCACAGGTGTCTATGTCGGA
TGGCGCGGAGAGGATATTCCTCGTGAAGTGAAGAGCTGGGGCAGGGGAGT
GCAGAGCTACGCGGTCGAGCGCTGGGACGAGAAGGGAGGAGCCCACGGGG
CGGGCCGGTGGCGTGATCGGGAAGTGGTCGAAGGAATCTGGACAGCGATC
GAAGAGGGAATGAGACTGCGAGGCTGGGGATCAAAGTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000020.1:2942741..2944229+

>CAN33_54615-T1 ID=CAN33_54615-T1|Name=CAN33_54615-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3816bp|location=Sequence derived from alignment at NKJJ01000020.1:2942741..2944229+ (Aspergillus niger FDAARGOS_311)
ATGGCCACCGATCCCTCCCTGCAAGATCCTCTCCTCTCGCTCCGTCGCGC
CATCGCAGCCGGCAACCTCCCCACGCCAACAACCTCCAGCGACCTCTCCG
ACCAAAATGCGACCGACGACCTTGCAAAAGCCACCCATCTCTACTTCCAA
CATCCCCTCCCTCAAACAATCCCCCTCACAACACCCACCCGCTTCGTCTC
CAGCTCCTCCGACTCCGCCGTCGACCTCCGCAGTATCTTCTTCGCGTGGC
AGAAGAAAGATGTCGCCATTCCAGAGTACATTGCCTCGGCGCAGGAGCTT
AACGAGTCGCTGAAGCAAAAGGAGCGCAAGGAAGGCGAGGAAGAGGAGAA
AGTTCAGAACTTGGTTTTCGTCGAGCGCTTGGATCTTCTGACTTGGCTGG
AGGGCGCGTCTGATGAGAGTGAATACATCAAGCCGGCGGCCAAGGTCATT
GATCCTAGGTTGCAGGAGATTTATAACGGAGAGCGGAAGATGGGGGATCG
GAATAGTGTGCTACGGGGAATCAAGCCGACGGACTTCTCTCACGTCCGCA
AAACCGCCGAATCTATGCTTGGACGCAACCGCTCCCGGCCGGGACAATAC
CCTGCTGGCGTGAAAGCCGGCAGCAAGCCGCAATCCATGGTGGTGCCGTC
TCCATCGGCCGGCCTGTCCCAGCCACGCAAGGCAAGCAAGACGCAAGACC
CCATCATCCTCCTCTCACCCTCGGCCTCATCGCTCATCCGCATGTCCAAC
GTGCGCTCCTTCCTGCAGGATGGTGTCTTCATCCCTCCCGATCACCCTAC
TCTTTCCATGTCCAACTCCAATATCCTCTACATCTCCCGTCCGCTGCGCA
TGCACTCGGACCCGTCCAGCTCCTCTCTTCGTCCTGGCGGTGGCAGCTCC
TCGCAAGTCACGTCCCGGAAACCTACACGCTTCATCCTCGTCGATAGCAC
GGCCAACTTCCGTCCGGATTACTGGCAGCGTCTGGTTGCCGTTTTCACGA
CGGGTCAGACCTGGCAGTTCAAGTCATACAAGTGGTCTTCGCCACCGGAG
CTCTTCAAGCATGCCACAGGTGTCTATGTCGGATGGCGCGGAGAGGATAT
TCCTCGTGAAGTGAAGAGCTGGGGCAGGGGAGTGCAGAGCTACGCGGTCG
AGCGCTGGGACGAGAAGGGAGGAGCCCACGGGGCGGGCCGGTGGCGTGAT
CGGGAAGTGGTCGAAGGAATCTGGACAGCGATCGAAGAGGGAATGAGACT
GCGAGGCTGGGGATCAAAGTAGATGGCCACCGATCCCTCCCTGCAAGATC
CTCTCCTCTCGCTCCGTCGCGCCATCGCAGCCGGCAACCTCCCCACGCCA
ACAACCTCCAGCGACCTCTCCGACCAAAATGCGACCGACGACCTTGCAAA
AGCCACCCATCTCTACTTCCAACATCCCCTCCCTCAAACAATCCCCCTCA
CAACACCCACCCGCTTCGTCTCCAGCTCCTCCGACTCCGCCGTCGACCTC
CGCAGTATCTTCTTCGCGTGGCAGAAGAAAGATGTCGCCATTCCAGAGTA
CATTGCCTCGGCGCAGGAGCTTAACGAGTCGCTGAAGCAAAAGGAGCGCA
AGGAAGGCGAGGAAGAGGAGAAAGTTCAGAACTTGGTTTTCGTCGAGCGC
TTGGATCTTCTGACTTGGCTGGAGGGCGCGTCTGATGAGAGTGAATACAT
CAAGCCGGCGGCCAAGGTCATTGATCCTAGGTTGCAGGAGATTTATAACG
GAGAGCGGAAGATGGGGGATCGGAATAGTGTGCTACGGGGAATCAAGCCG
ACGGACTTCTCTCACGTCCGCAAAACCGCCGAATCTATGCTTGGACGCAA
CCGCTCCCGGCCGGGACAATACCCTGCTGGCGTGAAAGCCGGCAGCAAGC
CGCAATCCATGGTGGTGCCGTCTCCATCGGCCGGCCTGTCCCAGCCACGC
AAGGCAAGCAAGACGCAAGACCCCATCATCCTCCTCTCACCCTCGGCCTC
ATCGCTCATCCGCATGTCCAACGTGCGCTCCTTCCTGCAGGATGGTGTCT
TCATCCCTCCCGATCACCCTACTCTTTCCATGTCCAACTCCAATATCCTC
TACATCTCCCGTCCGCTGCGCATGCACTCGGACCCGTCCAGCTCCTCTCT
TCGTCCTGGCGGTGGCAGCTCCTCGCAAGTCACGTCCCGGAAACCTACAC
GCTTCATCCTCGTCGATAGCACGGCCAACTTCCGTCCGGATTACTGGCAG
CGTCTGGTTGCCGTTTTCACGACGGGTCAGACCTGGCAGTTCAAGTCATA
CAAGTGGTCTTCGCCACCGGAGCTCTTCAAGCATGCCACAGGTGTCTATG
TCGGATGGCGCGGAGAGGATATTCCTCGTGAAGTGAAGAGCTGGGGCAGG
GGAGTGCAGAGCTACGCGGTCGAGCGCTGGGACGAGAAGGGAGGAGCCCA
CGGGGCGGGCCGGTGGCGTGATCGGGAAGTGGTCGAAGGAATCTGGACAG
CGATCGAAGAGGGAATGAGACTGCGAGGCTGGGGATCAAAGTAGATGGCC
ACCGATCCCTCCCTGCAAGATCCTCTCCTCTCGCTCCGTCGCGCCATCGC
AGCCGGCAACCTCCCCACGCCAACAACCTCCAGCGACCTCTCCGACCAAA
ATGCGACCGACGACCTTGCAAAAGCCACCCATCTCTACTTCCAACATCCC
CTCCCTCAAACAATCCCCCTCACAACACCCACCCGCTTCGTCTCCAGCTC
CTCCGACTCCGCCGTCGACCTCCGCAGTATCTTCTTCGCGTGGCAGAAGA
AAGATGTCGCCATTCCAGAGTACATTGCCTCGGCGCAGGAGCTTAACGAG
TCGCTGAAGCAAAAGGAGCGCAAGGAAGGCGAGGAAGAGGAGAAAGTTCA
GAACTTGGTTTTCGTCGAGCGCTTGGATCTTCTGACTTGGCTGGAGGGCG
CGTCTGATGAGAGTGAATACATCAAGCCGGCGGCCAAGGTCATTGATCCT
AGGTTGCAGGAGATTTATAACGGAGAGCGGAAGATGGGGGATCGGAATAG
TGTGCTACGGGGAATCAAGCCGACGGACTTCTCTCACGTCCGCAAAACCG
CCGAATCTATGCTTGGACGCAACCGCTCCCGGCCGGGACAATACCCTGCT
GGCGTGAAAGCCGGCAGCAAGCCGCAATCCATGGTGGTGCCGTCTCCATC
GGCCGGCCTGTCCCAGCCACGCAAGGCAAGCAAGACGCAAGACCCCATCA
TCCTCCTCTCACCCTCGGCCTCATCGCTCATCCGCATGTCCAACGTGCGC
TCCTTCCTGCAGGATGGTGTCTTCATCCCTCCCGATCACCCTACTCTTTC
CATGTCCAACTCCAATATCCTCTACATCTCCCGTCCGCTGCGCATGCACT
CGGACCCGTCCAGCTCCTCTCTTCGTCCTGGCGGTGGCAGCTCCTCGCAA
GTCACGTCCCGGAAACCTACACGCTTCATCCTCGTCGATAGCACGGCCAA
CTTCCGTCCGGATTACTGGCAGCGTCTGGTTGCCGTTTTCACGACGGGTC
AGACCTGGCAGTTCAAGTCATACAAGTGGTCTTCGCCACCGGAGCTCTTC
AAGCATGCCACAGGTGTCTATGTCGGATGGCGCGGAGAGGATATTCCTCG
TGAAGTGAAGAGCTGGGGCAGGGGAGTGCAGAGCTACGCGGTCGAGCGCT
GGGACGAGAAGGGAGGAGCCCACGGGGCGGGCCGGTGGCGTGATCGGGAA
GTGGTCGAAGGAATCTGGACAGCGATCGAAGAGGGAATGAGACTGCGAGG
CTGGGGATCAAAGTAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_54615CAN33_54615Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_54615-T1.exon1CAN33_54615-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_54615-T1.exon2CAN33_54615-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_54615-T1.exon3CAN33_54615-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_54615-T1.cdsCAN33_54615-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_54615-T1CAN33_54615-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09263UWJ
DBxrefInterPro:IPR031336
DBxrefInterPro:IPR038103
DBxrefPFAM:PF05179
ProductRNA pol II accessory factor Cdc73 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:2942741..2944229 +
Powered by Drupal