You are here

Home

CAN33_54930-T1, CAN33_54930-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_54930-T1
Unique NameCAN33_54930-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:3168584..3169129+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_54930-T1 ID=CAN33_54930-T1|Name=CAN33_54930-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=546bp|location=Sequence derived from alignment at NKJJ01000020.1:3168584..3169129+ (Aspergillus niger FDAARGOS_311)
ATGCCCACTCAACCCACCCCCGAAAAAAGCAAAGAAACCCTCGAAGCCAA
ATCCGCCTTCAGCGCAACGCTGCTCAACATCGGCGGCACACATGCTTCCC
CGCTCGTGGAGCGCGCGCACACCATCACAGAGAACGCCTCCGCGCTGGAG
AAGCAGCAAGCGGAGCTAGAATCACATACAGCTGCACTGGCGAAGCAGAA
TGAGAGCTGGGATAAGTTGGCGGGGGAGGCGAGGGACGGGTTGAAGGAGA
TCGGGGATGTGCAGAATTGGGCGGAGGTGGTGGAGAGGGAGTTGTTGGTT
TTGGAGCAGACGTTGCAGTATGTTGAGGGGGGGGATAATAGGGATCATGG
TGGTGAGAATGATGATGATGAGGATGTTAATGGTGGGGATGGGCTGAATG
GTAGTATTACTAGGAATGGGACTGGGAAGGGGAAGGGGAGTACTAATAGT
ACTGATAGTACTTCTGCTGTTGAGGATGGAGGAGGTACTACTACCACTAC
CACTGGAAATGGAAGTGGAGGAACATCTTGGTTTAAGTGGTGGTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000020.1:3168584..3169129+

>CAN33_54930-T1 ID=CAN33_54930-T1|Name=CAN33_54930-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=810bp|location=Sequence derived from alignment at NKJJ01000020.1:3168584..3169129+ (Aspergillus niger FDAARGOS_311)
ATGCCCACTCAACCCACCCCCGAAAAAAGCAAAGAAACCCTCGAAGCCAA
ATCCGCCTTCAGCGCAACGCTGCTCAACATCGGCGGCACACATGCTTCCC
CGCTCGTGGAGCGCGCGCACACCATCACAGAGAACGCCTCCGCGCTGGAG
AAGCAGCAAGCGGAGCTAGAATCACATACAGCTGCACTGGCGAAGCAGAA
TGAGAGCTGGGATAAGTTGGCGGGGGAGGCGAGGGACGGGTTGAAGGAGA
TCGGGGATGTGCAGAATTGGGCGGAGGTGGTGGAGAGGGAGTTGTTGGTT
TTGGAGCAGACGTTGCATACTTCTGCTGTTGAGGATGGAGGAGGTACTAC
TACCACTACCACTGGAAATGGAAGTGGAGGAACATCTTGGTTTAAGTGGT
GGTAGATGCCCACTCAACCCACCCCCGAAAAAAGCAAAGAAACCCTCGAA
GCCAAATCCGCCTTCAGCGCAACGCTGCTCAACATCGGCGGCACACATGC
TTCCCCGCTCGTGGAGCGCGCGCACACCATCACAGAGAACGCCTCCGCGC
TGGAGAAGCAGCAAGCGGAGCTAGAATCACATACAGCTGCACTGGCGAAG
CAGAATGAGAGCTGGGATAAGTTGGCGGGGGAGGCGAGGGACGGGTTGAA
GGAGATCGGGGATGTGCAGAATTGGGCGGAGGTGGTGGAGAGGGAGTTGT
TGGTTTTGGAGCAGACGTTGCATACTTCTGCTGTTGAGGATGGAGGAGGT
ACTACTACCACTACCACTGGAAATGGAAGTGGAGGAACATCTTGGTTTAA
GTGGTGGTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0031083BLOC-1 complex
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_54930CAN33_54930Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_54930-T1.exon1CAN33_54930-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_54930-T1.exon2CAN33_54930-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_54930-T1.cdsCAN33_54930-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_54930-T1CAN33_54930-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR009395
DBxrefPFAM:PF06320
ProductGCN5-like protein 1 (GCN5L1) family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:3168584..3169129 +
Powered by Drupal