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CAN33_5500-T1, CAN33_5500-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_5500-T1
Unique NameCAN33_5500-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000019.1:1060048..1062004-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_5500-T1 ID=CAN33_5500-T1|Name=CAN33_5500-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1957bp|location=Sequence derived from alignment at NKJJ01000019.1:1060048..1062004- (Aspergillus niger FDAARGOS_311)
ATGGCACCTACTTCGGTGCAAGGTCAACCATCATTTGCATACTACGCTGA
TTCGCAGCAAAGACAACATTTCACCAGCCACCCCTCAGATATGCAGTCAT
ACTATGGCCAAGTGCAGGCCTTCCAGCAACAACCACAGCACTGCATGCCG
GAGCAGCAGACACTCTACACTGCCCCTCTCATGAACATGCACCAGATGGC
TACCACCAATGCCTTCCGTGGTGCCATGAACATGACTCCCATTGCCTCTC
CTCAGCCGTCACACCTCAAGCCCACAATTGTTGTGCAGCAGGGCTCTCCC
GCCCTGATGCCTCTGGACACGAGGTTCGTCGGTAACGACTACTACGCATT
CCCCTCCACCCCACCACTCTCCACAGCTGGAAGCTCTATCAGCAGCCCGC
CTTCTACCAGCGGCACCCTTCACACCCCGATCAATGACAGCTTCTTCGCT
TTCGAGAAGGTGGAAGGTGTCAAGGAGGGATGCGAGGGAGACGTCCATGC
AGAGATTCTGGCCAATGCTGACTGGGCCCGGTCTGACTCGCCGCCTCTTA
CACCTGGTAAGTCATTATCTAACCCGATGTCCCTTTTTTACATGGTTGCA
AGATAGGCTGCAGGGAGTGGGTGCAGCCAACGGAAAAGGCACGGGGCCGG
GCATCTAGGGTTGTACAGGGAGACTAACTCGACTTGTTCTAGTGTTCATC
CATCCGCCTTCCCTCACCGCCAGCCAAACATCCGAGCTTCTGTCAGCGCA
CAGCTCTTGCCCATCCCTTTCCCCATCGCCATCTCCCGTGGTCCCCACAT
TCGTTGCCCAGCCTCAAGGTCTGCCGACCGAGCAGTCCAGCTCCGACTTC
TGTGACCCCCGTCAGCTGACGGTTGAGTCCTCCATCAATGCCACCCCTGC
TGAGCTGCCGCCTCTGCCCACGCTCTCCTGCGATGACGAGGAGCCTCGGG
TGGTTCTGGGCAGCGAGGCCGTGACCCTTCCTGTCCATGAGACCCTCTCT
CCCGCCTTCACCTGCTCCTCTTCGGAGGACCCTCTCAGCAGCCTGCCGAC
CTTTGACAGCTTCTCGGACCTGGACTCGGAAGACGAATTCGTCAACCGCC
TGGTCGACTTCCCCCCTAGTGGCAATGCCTACTACTTGGGTGAGAAGAGG
CAGCGCGTGGGAACGACATACCCCCTTGAGGAAGAGGAATTCTTCAGTGA
GCAGAGCTTCGACGAGTCTGACGAGCAAGATCTCTCTCAGTCCAGTCTCC
CTTACCTGGGAAGCCACGACTTCACTGGCGTCCAGACGAACATCAATGAA
GCTTCGGAAGAGATGGGCAACAAGAAGAGGAACAACCGCAAGTCGCTGAA
GCGGGCTAGTACCTCGGACAGCGAAACGGATTCGATTAGCAAGAAGTCGC
AGCCTTCGATCAACAGCCGTGCCACCAGCACTGAGACAAACGCCTCGACA
CCCCAGACTGTCCAGGCCCGCCACAACTCCGATGCGCATTCGTCGTGCGC
TTCTGAGGCTCCTGCTGCCCCCGTCTCGGTCAACCGACGCGGTCGTAAGC
AGTCCCTGACGGATGACCCCTCCAAGACCTTCGTGTGCACCCTCTGCTCC
CGTCGCTTCCGTCGCCAAGAGCACCTCAAGCGTCACTACCGCTCTCTCCA
CACTCAGGACAAGCCTTTCGAGTGCAATGAGTGCGGTAAGAAGTTCTCGC
GGAGCGATAACCTTGCGCAGCACGCTCGCACTCATGCGGGTGGCTCTGTC
GTGATGGGCGTCATCGACACCGGCAATGCGACCCCGCCAACCCCCTATGA
AGAACGAGACCCCAGTACGCTGGGAAATGTTCTCTACGAGGCCGCCAACG
CCGCCGCTACCAAGTCCACAACCAGTGAGTCGGATGAGAGTTCCTCTGAC
TCGCCGGTTGCCGACCGACGGGCGCCCAAGAAGCGCAAGCGCGACAGCGA
TGCCTAG
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Coding sequence (CDS) from alignment at NKJJ01000019.1:1060048..1062004-

>CAN33_5500-T1 ID=CAN33_5500-T1|Name=CAN33_5500-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3642bp|location=Sequence derived from alignment at NKJJ01000019.1:1060048..1062004- (Aspergillus niger FDAARGOS_311)
TGTTCATCCATCCGCCTTCCCTCACCGCCAGCCAAACATCCGAGCTTCTG
TCAGCGCACAGCTCTTGCCCATCCCTTTCCCCATCGCCATCTCCCGTGGT
CCCCACATTCGTTGCCCAGCCTCAAGGTCTGCCGACCGAGCAGTCCAGCT
CCGACTTCTGTGACCCCCGTCAGCTGACGGTTGAGTCCTCCATCAATGCC
ACCCCTGCTGAGCTGCCGCCTCTGCCCACGCTCTCCTGCGATGACGAGGA
GCCTCGGGTGGTTCTGGGCAGCGAGGCCGTGACCCTTCCTGTCCATGAGA
CCCTCTCTCCCGCCTTCACCTGCTCCTCTTCGGAGGACCCTCTCAGCAGC
CTGCCGACCTTTGACAGCTTCTCGGACCTGGACTCGGAAGACGAATTCGT
CAACCGCCTGGTCGACTTCCCCCCTAGTGGCAATGCCTACTACTTGGGTG
AGAAGAGGCAGCGCGTGGGAACGACATACCCCCTTGAGGAAGAGGAATTC
TTCAGTGAGCAGAGCTTCGACGAGTCTGACGAGCAAGATCTCTCTCAGTC
CAGTCTCCCTTACCTGGGAAGCCACGACTTCACTGGCGTCCAGACGAACA
TCAATGAAGCTTCGGAAGAGATGGGCAACAAGAAGAGGAACAACCGCAAG
TCGCTGAAGCGGGCTAGTACCTCGGACAGCGAAACGGATTCGATTAGCAA
GAAGTCGCAGCCTTCGATCAACAGCCGTGCCACCAGCACTGAGACAAACG
CCTCGACACCCCAGACTGTCCAGGCCCGCCACAACTCCGATGCGCATTCG
TCGTGCGCTTCTGAGGCTCCTGCTGCCCCCGTCTCGGTCAACCGACGCGG
TCGTAAGCAGTCCCTGACGGATGACCCCTCCAAGACCTTCGTGTGCACCC
TCTGCTCCCGTCGCTTCCGTCGCCAAGAGCACCTCAAGCGTCACTACCGC
TCTCTCCACACTCAGGACAAGCCTTTCGAGTGCAATGAGTGCGGTAAGAA
GTTCTCGCGGAGCGATAACCTTGCGCAGCACGCTCGCACTCATGCGGGTG
GCTCTGTCGTGATGGGCGTCATCGACACCGGCAATGCGACCCCGCCAACC
CCCTATGAAGAACGAGACCCCAGTACGCTGGGAAATGTTCTCTACGAGGC
CGCCAACGCCGCCGCTACCAAGTCCACAACCAGTGAGTCGGATGAGAGTT
CCTCTGACTCGCCGGTTGCCGACCGACGGGCGCCCAAGAAGCGCAAGCGC
GACAGCGATGCCTAGATGGCACCTACTTCGGTGCAAGGTCAACCATCATT
TGCATACTACGCTGATTCGCAGCAAAGACAACATTTCACCAGCCACCCCT
CAGATATGCAGTCATACTATGGCCAAGTGCAGGCCTTCCAGCAACAACCA
CAGCACTGCATGCCGGAGCAGCAGACACTCTACACTGCCCCTCTCATGAA
CATGCACCAGATGGCTACCACCAATGCCTTCCGTGGTGCCATGAACATGA
CTCCCATTGCCTCTCCTCAGCCGTCACACCTCAAGCCCACAATTGTTGTG
CAGCAGGGCTCTCCCGCCCTGATGCCTCTGGACACGAGGTTCGTCGGTAA
CGACTACTACGCATTCCCCTCCACCCCACCACTCTCCACAGCTGGAAGCT
CTATCAGCAGCCCGCCTTCTACCAGCGGCACCCTTCACACCCCGATCAAT
GACAGCTTCTTCGCTTTCGAGAAGGTGGAAGGTGTCAAGGAGGGATGCGA
GGGAGACGTCCATGCAGAGATTCTGGCCAATGCTGACTGGGCCCGGTCTG
ACTCGCCGCCTCTTACACCTGTGTTCATCCATCCGCCTTCCCTCACCGCC
AGCCAAACATCCGAGCTTCTGTCAGCGCACAGCTCTTGCCCATCCCTTTC
CCCATCGCCATCTCCCGTGGTCCCCACATTCGTTGCCCAGCCTCAAGGTC
TGCCGACCGAGCAGTCCAGCTCCGACTTCTGTGACCCCCGTCAGCTGACG
GTTGAGTCCTCCATCAATGCCACCCCTGCTGAGCTGCCGCCTCTGCCCAC
GCTCTCCTGCGATGACGAGGAGCCTCGGGTGGTTCTGGGCAGCGAGGCCG
TGACCCTTCCTGTCCATGAGACCCTCTCTCCCGCCTTCACCTGCTCCTCT
TCGGAGGACCCTCTCAGCAGCCTGCCGACCTTTGACAGCTTCTCGGACCT
GGACTCGGAAGACGAATTCGTCAACCGCCTGGTCGACTTCCCCCCTAGTG
GCAATGCCTACTACTTGGGTGAGAAGAGGCAGCGCGTGGGAACGACATAC
CCCCTTGAGGAAGAGGAATTCTTCAGTGAGCAGAGCTTCGACGAGTCTGA
CGAGCAAGATCTCTCTCAGTCCAGTCTCCCTTACCTGGGAAGCCACGACT
TCACTGGCGTCCAGACGAACATCAATGAAGCTTCGGAAGAGATGGGCAAC
AAGAAGAGGAACAACCGCAAGTCGCTGAAGCGGGCTAGTACCTCGGACAG
CGAAACGGATTCGATTAGCAAGAAGTCGCAGCCTTCGATCAACAGCCGTG
CCACCAGCACTGAGACAAACGCCTCGACACCCCAGACTGTCCAGGCCCGC
CACAACTCCGATGCGCATTCGTCGTGCGCTTCTGAGGCTCCTGCTGCCCC
CGTCTCGGTCAACCGACGCGGTCGTAAGCAGTCCCTGACGGATGACCCCT
CCAAGACCTTCGTGTGCACCCTCTGCTCCCGTCGCTTCCGTCGCCAAGAG
CACCTCAAGCGTCACTACCGCTCTCTCCACACTCAGGACAAGCCTTTCGA
GTGCAATGAGTGCGGTAAGAAGTTCTCGCGGAGCGATAACCTTGCGCAGC
ACGCTCGCACTCATGCGGGTGGCTCTGTCGTGATGGGCGTCATCGACACC
GGCAATGCGACCCCGCCAACCCCCTATGAAGAACGAGACCCCAGTACGCT
GGGAAATGTTCTCTACGAGGCCGCCAACGCCGCCGCTACCAAGTCCACAA
CCAGTGAGTCGGATGAGAGTTCCTCTGACTCGCCGGTTGCCGACCGACGG
GCGCCCAAGAAGCGCAAGCGCGACAGCGATGCCTAGATGGCACCTACTTC
GGTGCAAGGTCAACCATCATTTGCATACTACGCTGATTCGCAGCAAAGAC
AACATTTCACCAGCCACCCCTCAGATATGCAGTCATACTATGGCCAAGTG
CAGGCCTTCCAGCAACAACCACAGCACTGCATGCCGGAGCAGCAGACACT
CTACACTGCCCCTCTCATGAACATGCACCAGATGGCTACCACCAATGCCT
TCCGTGGTGCCATGAACATGACTCCCATTGCCTCTCCTCAGCCGTCACAC
CTCAAGCCCACAATTGTTGTGCAGCAGGGCTCTCCCGCCCTGATGCCTCT
GGACACGAGGTTCGTCGGTAACGACTACTACGCATTCCCCTCCACCCCAC
CACTCTCCACAGCTGGAAGCTCTATCAGCAGCCCGCCTTCTACCAGCGGC
ACCCTTCACACCCCGATCAATGACAGCTTCTTCGCTTTCGAGAAGGTGGA
AGGTGTCAAGGAGGGATGCGAGGGAGACGTCCATGCAGAGATTCTGGCCA
ATGCTGACTGGGCCCGGTCTGACTCGCCGCCTCTTACACCTG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_5500CAN33_5500Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_5500-T1CAN33_5500-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_5500-T1.cdsCAN33_5500-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_5500-T1.exon2CAN33_5500-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_5500-T1.exon1CAN33_5500-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR036236
DBxrefInterPro:IPR013087
DBxrefPFAM:PF12874
DBxrefPFAM:PF00096
ProductZinc finger C2H2 type family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000019.1supercontigNKJJ01000019.1:1060048..1062004 -
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