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CAN33_55105-T1, CAN33_55105-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_55105-T1
Unique NameCAN33_55105-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:3276283..3277549-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_55105-T1 ID=CAN33_55105-T1|Name=CAN33_55105-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1267bp|location=Sequence derived from alignment at NKJJ01000020.1:3276283..3277549- (Aspergillus niger FDAARGOS_311)
ATGGACTACGAGATGGATATCGAGCCCACCGGGCCCCAAGTCACCGTTCG
CGAAGTGAGTTGACCTCTGACCAATCTACCAATTACACCATCTATACCAA
CACCAGCCCATGCAACACAATCACCCCATCGAACCTTTCCAACCATCCTT
ACTAACACTTTGAATCTTAATAGGCCGAACCCACTCGCGTTGACTTTAAA
CTCACCTCGGTCGACCTCGCTTTCGCCAACTCCCTCCGCCGAGTAATGCT
CTCCGAAATCCCCACGATGGCCATCGACCTCGTCGAAGTGGAAAAGAACA
CCTCCGTACTGCCCGACGAATTCCTCGCTCACCGTCTCGGCCTTATCCCC
CTGATCAGCAAAAACTGCGACCAAGACGTCGAATACACGCGCGACTGCGA
ATGCGAGGACCACTGCGCGCGCTGCTCCGTGACCCTGTCGCTCCATGCGC
GGTGCACAGGCGACGATATCATGCGGGTGTATGCGCGCGATCTCGTGGTA
TCAGGAGAACGGGCGAACGAGTGGGTGGGAAACCCGGTGATCTTGGATCC
GGAGGGAAACGGGCCCTTGATTTGTAAATTGAGACGCGGCCAGGAGTTGA
AGATGACGTGTATTGCGAAGAAGGGTATTGCGAAGGAACATGCGAAGTGG
ATGCCCACGTCGGCGATTGGGTTTGAATATGATCCGCATAATAATTTGAG
ACATGTGGATTACTGGTATGAGGAGGATCCGGCGAAGGAATGGTATGTTT
TATCCCAAACCCTCATTTTCATTTTACTTCTATTCCAGCACCTTTCTGCA
TCGCATACTACAGAGCAAGGGAATTCTACATGAGCGAGCAAAGATCAATG
AGCTAATAGTACAACCAATACAGGCCCGTCTCAGCCAACGCAGGATGGGA
ACAGCCTGCTCCCCCAGACCAACCATTCGACTACGACGCCCAGCCCAACA
GCTTCTACATCGACGTCGAGAGCATCGGCACCCTTGAACCGGACATGATC
ATCCAGCAAGGAATCACAGTGTTGCAACGGAAGCTCGCCTCTGTGATATC
CTCGTTATCAGGCACCGAAGGCGCAGACCGCAACGGCGTCATGGGCGGTG
ACGACGAAGATATGATGGGTGTGCGCAGCCCGGATGCCTACGAACCGCCC
GAGGGTATGGACGGTGGCTTTACGGCGTATGCGAATGGTGGAGGCGCTAG
CGCATGGGGTCCTAGTGCTACGACGCCATATGGAGTCACGCCATATGGGG
GTGGATATGGATTCTAA
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Coding sequence (CDS) from alignment at NKJJ01000020.1:3276283..3277549-

>CAN33_55105-T1 ID=CAN33_55105-T1|Name=CAN33_55105-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3051bp|location=Sequence derived from alignment at NKJJ01000020.1:3276283..3277549- (Aspergillus niger FDAARGOS_311)
GCCCGTCTCAGCCAACGCAGGATGGGAACAGCCTGCTCCCCCAGACCAAC
CATTCGACTACGACGCCCAGCCCAACAGCTTCTACATCGACGTCGAGAGC
ATCGGCACCCTTGAACCGGACATGATCATCCAGCAAGGAATCACAGTGTT
GCAACGGAAGCTCGCCTCTGTGATATCCTCGTTATCAGGCACCGAAGGCG
CAGACCGCAACGGCGTCATGGGCGGTGACGACGAAGATATGATGGGTGTG
CGCAGCCCGGATGCCTACGAACCGCCCGAGGGTATGGACGGTGGCTTTAC
GGCGTATGCGAATGGTGGAGGCGCTAGCGCATGGGGTCCTAGTGCTACGA
CGCCATATGGAGTCACGCCATATGGGGGTGGATATGGATTCTAAGCCGAA
CCCACTCGCGTTGACTTTAAACTCACCTCGGTCGACCTCGCTTTCGCCAA
CTCCCTCCGCCGAGTAATGCTCTCCGAAATCCCCACGATGGCCATCGACC
TCGTCGAAGTGGAAAAGAACACCTCCGTACTGCCCGACGAATTCCTCGCT
CACCGTCTCGGCCTTATCCCCCTGATCAGCAAAAACTGCGACCAAGACGT
CGAATACACGCGCGACTGCGAATGCGAGGACCACTGCGCGCGCTGCTCCG
TGACCCTGTCGCTCCATGCGCGGTGCACAGGCGACGATATCATGCGGGTG
TATGCGCGCGATCTCGTGGTATCAGGAGAACGGGCGAACGAGTGGGTGGG
AAACCCGGTGATCTTGGATCCGGAGGGAAACGGGCCCTTGATTTGTAAAT
TGAGACGCGGCCAGGAGTTGAAGATGACGTGTATTGCGAAGAAGGGTATT
GCGAAGGAACATGCGAAGTGGATGCCCACGTCGGCGATTGGGTTTGAATA
TGATCCGCATAATAATTTGAGACATGTGGATTACTGGTATGAGGAGGATC
CGGCGAAGGAATGATGGACTACGAGATGGATATCGAGCCCACCGGGCCCC
AAGTCACCGTTCGCGAAGCCCGTCTCAGCCAACGCAGGATGGGAACAGCC
TGCTCCCCCAGACCAACCATTCGACTACGACGCCCAGCCCAACAGCTTCT
ACATCGACGTCGAGAGCATCGGCACCCTTGAACCGGACATGATCATCCAG
CAAGGAATCACAGTGTTGCAACGGAAGCTCGCCTCTGTGATATCCTCGTT
ATCAGGCACCGAAGGCGCAGACCGCAACGGCGTCATGGGCGGTGACGACG
AAGATATGATGGGTGTGCGCAGCCCGGATGCCTACGAACCGCCCGAGGGT
ATGGACGGTGGCTTTACGGCGTATGCGAATGGTGGAGGCGCTAGCGCATG
GGGTCCTAGTGCTACGACGCCATATGGAGTCACGCCATATGGGGGTGGAT
ATGGATTCTAAGCCGAACCCACTCGCGTTGACTTTAAACTCACCTCGGTC
GACCTCGCTTTCGCCAACTCCCTCCGCCGAGTAATGCTCTCCGAAATCCC
CACGATGGCCATCGACCTCGTCGAAGTGGAAAAGAACACCTCCGTACTGC
CCGACGAATTCCTCGCTCACCGTCTCGGCCTTATCCCCCTGATCAGCAAA
AACTGCGACCAAGACGTCGAATACACGCGCGACTGCGAATGCGAGGACCA
CTGCGCGCGCTGCTCCGTGACCCTGTCGCTCCATGCGCGGTGCACAGGCG
ACGATATCATGCGGGTGTATGCGCGCGATCTCGTGGTATCAGGAGAACGG
GCGAACGAGTGGGTGGGAAACCCGGTGATCTTGGATCCGGAGGGAAACGG
GCCCTTGATTTGTAAATTGAGACGCGGCCAGGAGTTGAAGATGACGTGTA
TTGCGAAGAAGGGTATTGCGAAGGAACATGCGAAGTGGATGCCCACGTCG
GCGATTGGGTTTGAATATGATCCGCATAATAATTTGAGACATGTGGATTA
CTGGTATGAGGAGGATCCGGCGAAGGAATGATGGACTACGAGATGGATAT
CGAGCCCACCGGGCCCCAAGTCACCGTTCGCGAAGCCCGTCTCAGCCAAC
GCAGGATGGGAACAGCCTGCTCCCCCAGACCAACCATTCGACTACGACGC
CCAGCCCAACAGCTTCTACATCGACGTCGAGAGCATCGGCACCCTTGAAC
CGGACATGATCATCCAGCAAGGAATCACAGTGTTGCAACGGAAGCTCGCC
TCTGTGATATCCTCGTTATCAGGCACCGAAGGCGCAGACCGCAACGGCGT
CATGGGCGGTGACGACGAAGATATGATGGGTGTGCGCAGCCCGGATGCCT
ACGAACCGCCCGAGGGTATGGACGGTGGCTTTACGGCGTATGCGAATGGT
GGAGGCGCTAGCGCATGGGGTCCTAGTGCTACGACGCCATATGGAGTCAC
GCCATATGGGGGTGGATATGGATTCTAAGCCGAACCCACTCGCGTTGACT
TTAAACTCACCTCGGTCGACCTCGCTTTCGCCAACTCCCTCCGCCGAGTA
ATGCTCTCCGAAATCCCCACGATGGCCATCGACCTCGTCGAAGTGGAAAA
GAACACCTCCGTACTGCCCGACGAATTCCTCGCTCACCGTCTCGGCCTTA
TCCCCCTGATCAGCAAAAACTGCGACCAAGACGTCGAATACACGCGCGAC
TGCGAATGCGAGGACCACTGCGCGCGCTGCTCCGTGACCCTGTCGCTCCA
TGCGCGGTGCACAGGCGACGATATCATGCGGGTGTATGCGCGCGATCTCG
TGGTATCAGGAGAACGGGCGAACGAGTGGGTGGGAAACCCGGTGATCTTG
GATCCGGAGGGAAACGGGCCCTTGATTTGTAAATTGAGACGCGGCCAGGA
GTTGAAGATGACGTGTATTGCGAAGAAGGGTATTGCGAAGGAACATGCGA
AGTGGATGCCCACGTCGGCGATTGGGTTTGAATATGATCCGCATAATAAT
TTGAGACATGTGGATTACTGGTATGAGGAGGATCCGGCGAAGGAATGATG
GACTACGAGATGGATATCGAGCCCACCGGGCCCCAAGTCACCGTTCGCGA
A
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_55105CAN33_55105Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_55105-T1CAN33_55105-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_55105-T1.cdsCAN33_55105-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_55105-T1.exon3CAN33_55105-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_55105-T1.exon2CAN33_55105-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_55105-T1.exon1CAN33_55105-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG09263PXH
DBxrefInterPro:IPR001514
DBxrefInterPro:IPR011262
DBxrefInterPro:IPR036603
DBxrefInterPro:IPR036643
DBxrefInterPro:IPR011263
DBxrefPFAM:PF01193
DBxrefPFAM:PF01000
ProductRNA polymerase Rpb3/RpoA insert domain family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:3276283..3277549 -
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