|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000019.1:1250192..1252131- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_5795-T1 ID=CAN33_5795-T1|Name=CAN33_5795-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1940bp|location=Sequence derived from alignment at NKJJ01000019.1:1250192..1252131- (Aspergillus niger FDAARGOS_311)
ATGGCACCTCCGAGCGGGTCGGCGGCATACAAGAAGAAAGATGGCACCCT
GACCATAGCCCAGGACCGCCAGTCGATCTCTTGGATCCCGGCGGCTGGCG
GTGCAGCTGGTGCAATTACCCTTCCAGTTGCTCAGATTACCAGTACGGCG
TAGTCTTCAGCTTGATTCACCGGGCGCGATTTTACTGACTACGGATAGAT
TTGCAACAGACCCCCGCGAGTAACCCGAAAGTGATGCTGAAGATCTTTGT
CCTCCCTCCGAACGCCCCTGCCAGTTCCCCCGAACAATATGTCTTCTCCT
TTACAGCTGGAGCGAACGCGCGACCGGAAGCTGATGCCATCAGAGATGCG
CTCAGTGCCGCTATTCAAGCTGCAAAGACAGCTCAGAATGCCCCCGTTAA
AGAAGGCGTGTCTCCTGCTATGGCCATAGCGAATGCTGTATCATCGGCAG
GGAAAGAGAAGAACCCATGGGATGATGACAAGCGGCTTCAAGGAGATGTG
GAGTTGCAACAGTCGCTGCTGAAGTCGAATCCGATTCTCCAGCGCATGTT
CATGGAGTCGTTACATACCAAGCCGGATACTTTGTCTGCTTCGCAGTTCA
TGACGCAGTTCTGGTCCACTCGACTTCATCTTTTGCGCGCGCATGCGATC
GAGCGGTCGCAGACACGCGGATCCTACAATGTGCTGTCGACATTGAAGCC
GCGGGTGGAGGATAGCGTGACAAAATTGAATATTAGCAAGGAGCAGATCC
AGTTGATTTTCAATCAGCACCCGCTTGTGAAGCGGGTGTACGATGAGAAT
GTACCCAAGCTTAGCGAGCAGCAGTTCTGGTCTCGGTTTTTCCAAAGTCG
GTTGTTCAAGAAACTGCGCGGAGAGCGCATCTCCGAAACGGATCCCACGG
ACATAATCCTGGACAAATACCTTAAGGCGGACGAGTCGGGAAATTTACCG
CGCGACGCGCATGTTCCGCATTTCCTGGATCTGGCTGGAAATGAAGTGAA
CAACAGTCAACGGCAAGGTAACCGACCTGATCTCGACATGCGCCCGTCCT
CGGTGGAGAAGGTGCCTATCATCCGCACCCTGAATAGTCTGAGTGAGAAG
ATTATGGCGAACGTTGCACCAGCCGATGGCGAGGCAGATGGCAAGACGGG
TGAGGATGGGACGTACAACGAGCTGCAGCTGCGTGACTTACGCGGGGACG
AGGAACAGCAACGTATCCTCCTCAACGTCAAGGACCAAAGTCGCTTTTTC
TCGTCACACTCAAAAACTGCGGAGGACGAGCAAAATAAGCTGTTTGCCCA
GCAGGATCCAAATCAGATACTCGGACAGCTACGGGGGGATCTGGAACAAA
ATCTGCCCGAGGGCGGAGCCGCGCCGCTGGGGAGATTGGTAGAACCGCAG
GAAGAGGACGATGAGGATCAGCAAAAGTTCGAAGACGTAATTGGCTCTAG
GGCCAATTTGAAGCGCGCCTCAAACCAGATCCTCGAAGCGATCCGTGACC
GCCGCTCCCAAACAGAGGGATCAGGCAATGCCGGCACATATGGTTTGTCG
ACTGCATTGTACGACCGGCTGACCTTAACGCATGCCACGACGACTGAATT
TCTGCATCAATTCTGGCAGGCATTTCTGTCAGGAAACGCGGATCGCGCAG
GTGAGGTAGCTTCGCTTGTGGAGTCACTGAACCGAGCCATGGAGCGCATT
AAGTCGGTGGCGCAAGACGCAGAGACAGAGCGGCAGGTTGAGGTTGATCG
ACTGAAGCAGCATGCCCGAGAAGTGCTGGAAAGGACGGGAAGGAAGCTGA
AGCTCAATCTCGCCGGTGTGGCTGGGGGCGAACAAGCTGTCAATCGACTA
TTGGGGCCGACCATTCGGGCGTTGGAAACGGCATTGGCGAAGTACAACCA
GGCGTTGGCTGAAGAAATGAAGGAAATGCCATCTGCGTGA back to topCoding sequence (CDS) from alignment at NKJJ01000019.1:1250192..1252131- >CAN33_5795-T1 ID=CAN33_5795-T1|Name=CAN33_5795-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3768bp|location=Sequence derived from alignment at NKJJ01000019.1:1250192..1252131- (Aspergillus niger FDAARGOS_311)
ATTTGCAACAGACCCCCGCGAGTAACCCGAAAGTGATGCTGAAGATCTTT
GTCCTCCCTCCGAACGCCCCTGCCAGTTCCCCCGAACAATATGTCTTCTC
CTTTACAGCTGGAGCGAACGCGCGACCGGAAGCTGATGCCATCAGAGATG
CGCTCAGTGCCGCTATTCAAGCTGCAAAGACAGCTCAGAATGCCCCCGTT
AAAGAAGGCGTGTCTCCTGCTATGGCCATAGCGAATGCTGTATCATCGGC
AGGGAAAGAGAAGAACCCATGGGATGATGACAAGCGGCTTCAAGGAGATG
TGGAGTTGCAACAGTCGCTGCTGAAGTCGAATCCGATTCTCCAGCGCATG
TTCATGGAGTCGTTACATACCAAGCCGGATACTTTGTCTGCTTCGCAGTT
CATGACGCAGTTCTGGTCCACTCGACTTCATCTTTTGCGCGCGCATGCGA
TCGAGCGGTCGCAGACACGCGGATCCTACAATGTGCTGTCGACATTGAAG
CCGCGGGTGGAGGATAGCGTGACAAAATTGAATATTAGCAAGGAGCAGAT
CCAGTTGATTTTCAATCAGCACCCGCTTGTGAAGCGGGTGTACGATGAGA
ATGTACCCAAGCTTAGCGAGCAGCAGTTCTGGTCTCGGTTTTTCCAAAGT
CGGTTGTTCAAGAAACTGCGCGGAGAGCGCATCTCCGAAACGGATCCCAC
GGACATAATCCTGGACAAATACCTTAAGGCGGACGAGTCGGGAAATTTAC
CGCGCGACGCGCATGTTCCGCATTTCCTGGATCTGGCTGGAAATGAAGTG
AACAACAGTCAACGGCAAGGTAACCGACCTGATCTCGACATGCGCCCGTC
CTCGGTGGAGAAGGTGCCTATCATCCGCACCCTGAATAGTCTGAGTGAGA
AGATTATGGCGAACGTTGCACCAGCCGATGGCGAGGCAGATGGCAAGACG
GGTGAGGATGGGACGTACAACGAGCTGCAGCTGCGTGACTTACGCGGGGA
CGAGGAACAGCAACGTATCCTCCTCAACGTCAAGGACCAAAGTCGCTTTT
TCTCGTCACACTCAAAAACTGCGGAGGACGAGCAAAATAAGCTGTTTGCC
CAGCAGGATCCAAATCAGATACTCGGACAGCTACGGGGGGATCTGGAACA
AAATCTGCCCGAGGGCGGAGCCGCGCCGCTGGGGAGATTGGTAGAACCGC
AGGAAGAGGACGATGAGGATCAGCAAAAGTTCGAAGACGTAATTGGCTCT
AGGGCCAATTTGAAGCGCGCCTCAAACCAGATCCTCGAAGCGATCCGTGA
CCGCCGCTCCCAAACAGAGGGATCAGGCAATGCCGGCACATATGGTTTGT
CGACTGCATTGTACGACCGGCTGACCTTAACGCATGCCACGACGACTGAA
TTTCTGCATCAATTCTGGCAGGCATTTCTGTCAGGAAACGCGGATCGCGC
AGGTGAGGTAGCTTCGCTTGTGGAGTCACTGAACCGAGCCATGGAGCGCA
TTAAGTCGGTGGCGCAAGACGCAGAGACAGAGCGGCAGGTTGAGGTTGAT
CGACTGAAGCAGCATGCCCGAGAAGTGCTGGAAAGGACGGGAAGGAAGCT
GAAGCTCAATCTCGCCGGTGTGGCTGGGGGCGAACAAGCTGTCAATCGAC
TATTGGGGCCGACCATTCGGGCGTTGGAAACGGCATTGGCGAAGTACAAC
CAGGCGTTGGCTGAAGAAATGAAGGAAATGCCATCTGCGTGAATGGCACC
TCCGAGCGGGTCGGCGGCATACAAGAAGAAAGATGGCACCCTGACCATAG
CCCAGGACCGCCAGTCGATCTCTTGGATCCCGGCGGCTGGCGGTGCAGCT
GGTGCAATTACCCTTCCAGTTGCTCAGATTACCAATTTGCAACAGACCCC
CGCGAGTAACCCGAAAGTGATGCTGAAGATCTTTGTCCTCCCTCCGAACG
CCCCTGCCAGTTCCCCCGAACAATATGTCTTCTCCTTTACAGCTGGAGCG
AACGCGCGACCGGAAGCTGATGCCATCAGAGATGCGCTCAGTGCCGCTAT
TCAAGCTGCAAAGACAGCTCAGAATGCCCCCGTTAAAGAAGGCGTGTCTC
CTGCTATGGCCATAGCGAATGCTGTATCATCGGCAGGGAAAGAGAAGAAC
CCATGGGATGATGACAAGCGGCTTCAAGGAGATGTGGAGTTGCAACAGTC
GCTGCTGAAGTCGAATCCGATTCTCCAGCGCATGTTCATGGAGTCGTTAC
ATACCAAGCCGGATACTTTGTCTGCTTCGCAGTTCATGACGCAGTTCTGG
TCCACTCGACTTCATCTTTTGCGCGCGCATGCGATCGAGCGGTCGCAGAC
ACGCGGATCCTACAATGTGCTGTCGACATTGAAGCCGCGGGTGGAGGATA
GCGTGACAAAATTGAATATTAGCAAGGAGCAGATCCAGTTGATTTTCAAT
CAGCACCCGCTTGTGAAGCGGGTGTACGATGAGAATGTACCCAAGCTTAG
CGAGCAGCAGTTCTGGTCTCGGTTTTTCCAAAGTCGGTTGTTCAAGAAAC
TGCGCGGAGAGCGCATCTCCGAAACGGATCCCACGGACATAATCCTGGAC
AAATACCTTAAGGCGGACGAGTCGGGAAATTTACCGCGCGACGCGCATGT
TCCGCATTTCCTGGATCTGGCTGGAAATGAAGTGAACAACAGTCAACGGC
AAGGTAACCGACCTGATCTCGACATGCGCCCGTCCTCGGTGGAGAAGGTG
CCTATCATCCGCACCCTGAATAGTCTGAGTGAGAAGATTATGGCGAACGT
TGCACCAGCCGATGGCGAGGCAGATGGCAAGACGGGTGAGGATGGGACGT
ACAACGAGCTGCAGCTGCGTGACTTACGCGGGGACGAGGAACAGCAACGT
ATCCTCCTCAACGTCAAGGACCAAAGTCGCTTTTTCTCGTCACACTCAAA
AACTGCGGAGGACGAGCAAAATAAGCTGTTTGCCCAGCAGGATCCAAATC
AGATACTCGGACAGCTACGGGGGGATCTGGAACAAAATCTGCCCGAGGGC
GGAGCCGCGCCGCTGGGGAGATTGGTAGAACCGCAGGAAGAGGACGATGA
GGATCAGCAAAAGTTCGAAGACGTAATTGGCTCTAGGGCCAATTTGAAGC
GCGCCTCAAACCAGATCCTCGAAGCGATCCGTGACCGCCGCTCCCAAACA
GAGGGATCAGGCAATGCCGGCACATATGGTTTGTCGACTGCATTGTACGA
CCGGCTGACCTTAACGCATGCCACGACGACTGAATTTCTGCATCAATTCT
GGCAGGCATTTCTGTCAGGAAACGCGGATCGCGCAGGTGAGGTAGCTTCG
CTTGTGGAGTCACTGAACCGAGCCATGGAGCGCATTAAGTCGGTGGCGCA
AGACGCAGAGACAGAGCGGCAGGTTGAGGTTGATCGACTGAAGCAGCATG
CCCGAGAAGTGCTGGAAAGGACGGGAAGGAAGCTGAAGCTCAATCTCGCC
GGTGTGGCTGGGGGCGAACAAGCTGTCAATCGACTATTGGGGCCGACCAT
TCGGGCGTTGGAAACGGCATTGGCGAAGTACAACCAGGCGTTGGCTGAAG
AAATGAAGGAAATGCCATCTGCGTGAATGGCACCTCCGAGCGGGTCGGCG
GCATACAAGAAGAAAGATGGCACCCTGACCATAGCCCAGGACCGCCAGTC
GATCTCTTGGATCCCGGCGGCTGGCGGTGCAGCTGGTGCAATTACCCTTC
CAGTTGCTCAGATTACCA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG0926315C |
| DBxref | InterPro:IPR011993 |
| DBxref | InterPro:IPR013876 |
| DBxref | InterPro:IPR005607 |
| DBxref | PFAM:PF08567 |
| DBxref | PFAM:PF03909 |
| Product | TFIIH p62 subunit N-terminal domain family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000019.1 | supercontig | NKJJ01000019.1:1250192..1252131 - |
|
