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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000019.1:1797878..1798919+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_6570-T1 ID=CAN33_6570-T1|Name=CAN33_6570-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1042bp|location=Sequence derived from alignment at NKJJ01000019.1:1797878..1798919+ (Aspergillus niger FDAARGOS_311)
ATGCCTATCACAGGGTAAGCGCTGATCAGTCATCACATATACTCACATCA
TGCTGACTCCAACCAACCAGAGTCTACTTCATCCCCTCCAACCCAAATGC
ATCCACAGGGCTAGCGACTATCACAGAGCGCCTACACACAGCCCTAGCAG
ACGAGCCAACATTAGTAGGCCGTTGGTTCCTCGAACACCGACTGATGCGC
GATACTCCATCATGTGTTCCTGCCTCAGCATCCCAGCGCCAAGTACAACC
GCGCTATATGCAATTCCTATCACTGTCTTTTCACTCTAACCACGGCTTCA
TCTACACCTCTGAAGCACTAGAGAAAAGCACTCATCATTCCACCACCAGT
GTTAGCACCACGCCAGCTGGCTCACCCACCAATTCTACTGCTCAAAGTGG
AGCTCCAGGCGCAACAGCGCCCACCCCTTCCACCCCATCTAATGCTGCTG
CACAGTCAGGAGGACCAATGGTGATGACCACCGTGCCGCTTCCATCCTGT
AATGCACTTTTCCAGCACTTCGGCTACGCCTGCCAGCCTTTCTGGTGCCA
TCGACACACGGTAACCGTACCAGGCGGTGTGGTCTACGATGTGGGCGATT
TCCGAGTCCGAGTGGGTGATGTACGACAGACTCAGCCAGCAGCGAGGGTG
CGCGGAACAGTTGTGGAAATTGAATGGCGGGGTCCGTGCATAGTTGATGC
GATTTCAGCACCACGGAATTCGAGCGACGGACAAATAGCTGATGATGGCG
ACTCCGGGATTGATATGGCGTTCCCGGATGCTATTGAAGACGCGGATATT
GATGCAGAGTATGCGGCTAGTGCGGCGTTGATTAGGGAGTTCTGGGCGAG
ACTCGGCATTGAAGGAGCCAGAGAAGCTATTTTGTTGCCGGATGTAGGCA
AGGAAGCCAAGGATCGGTTGAGGAGATTGAAGCAGAAGGGCCGAAATACT
GTTTCTAACGAGGCGAGTCTACAGCAAGCGGAGGAGGATCCGGATCCGGA
TGCGGGTGTGGATGTGGCGAGGCAGTTTATGGAGATTTTTAG back to topCoding sequence (CDS) from alignment at NKJJ01000019.1:1797878..1798919+ >CAN33_6570-T1 ID=CAN33_6570-T1|Name=CAN33_6570-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2745bp|location=Sequence derived from alignment at NKJJ01000019.1:1797878..1798919+ (Aspergillus niger FDAARGOS_311)
ATGCCTATCACAGGAGTCTACTTCATCCCCTCCAACCCAAATGCATCCAC
AGGGCTAGCGACTATCACAGAGCGCCTACACACAGCCCTAGCAGACGAGC
CAACATTAGTAGGCCGTTGGTTCCTCGAACACCGACTGATGCGCGATACT
CCATCATGTGTTCCTGCCTCAGCATCCCAGCGCCAAGTACAACCGCGCTA
TATGCAATTCCTATCACTGTCTTTTCACTCTAACCACGGCTTCATCTACA
CCTCTGAAGCACTAGAGAAAAGCACTCATCATTCCACCACCAGTGTTAGC
ACCACGCCAGCTGGCTCACCCACCAATTCTACTGCTCAAAGTGGAGCTCC
AGGCGCAACAGCGCCCACCCCTTCCACCCCATCTAATGCTGCTGCACAGT
CAGGAGGACCAATGGTGATGACCACCGTGCCGCTTCCATCCTGTAATGCA
CTTTTCCAGCACTTCGGCTACGCCTGCCAGCCTTTCTGGTGCCATCGACA
CACGGTAACCGTACCAGGCGGTGTGGTCTACGATGTGGGCGATTTCCGAG
TCCGAGTGGGTGATGTACGACAGACTCAGCCAGCAGCGAGGGTGCGCGGA
ACAGTTGTGGAAATTGAATGGCGGGGTCCGTGCATAGTTGATGCGATTTC
AGCACCACGGAATTCGAGCGACGGACAAATAGCTGATGATGGCGACTCCG
GGATTGATATGGCGTTCCCGGATGCTATTGAAGACGCGGATATTGATGCA
GAGTATGCGGCTAGTGCGGCGTTGATTAGGGAGTTCTGGGCGAGACTCGG
CATTGAAGGAGCCAGAGAAGCTATTTTGTTGCCGGATGTAGGCAAGGAAG
CCAAGGATCGGTTGAGGAGATTGAAGCAGAAGGGCCGAAATACTGCAGTT
TATGGAGATTTTTAGATGCCTATCACAGGAGTCTACTTCATCCCCTCCAA
CCCAAATGCATCCACAGGGCTAGCGACTATCACAGAGCGCCTACACACAG
CCCTAGCAGACGAGCCAACATTAGTAGGCCGTTGGTTCCTCGAACACCGA
CTGATGCGCGATACTCCATCATGTGTTCCTGCCTCAGCATCCCAGCGCCA
AGTACAACCGCGCTATATGCAATTCCTATCACTGTCTTTTCACTCTAACC
ACGGCTTCATCTACACCTCTGAAGCACTAGAGAAAAGCACTCATCATTCC
ACCACCAGTGTTAGCACCACGCCAGCTGGCTCACCCACCAATTCTACTGC
TCAAAGTGGAGCTCCAGGCGCAACAGCGCCCACCCCTTCCACCCCATCTA
ATGCTGCTGCACAGTCAGGAGGACCAATGGTGATGACCACCGTGCCGCTT
CCATCCTGTAATGCACTTTTCCAGCACTTCGGCTACGCCTGCCAGCCTTT
CTGGTGCCATCGACACACGGTAACCGTACCAGGCGGTGTGGTCTACGATG
TGGGCGATTTCCGAGTCCGAGTGGGTGATGTACGACAGACTCAGCCAGCA
GCGAGGGTGCGCGGAACAGTTGTGGAAATTGAATGGCGGGGTCCGTGCAT
AGTTGATGCGATTTCAGCACCACGGAATTCGAGCGACGGACAAATAGCTG
ATGATGGCGACTCCGGGATTGATATGGCGTTCCCGGATGCTATTGAAGAC
GCGGATATTGATGCAGAGTATGCGGCTAGTGCGGCGTTGATTAGGGAGTT
CTGGGCGAGACTCGGCATTGAAGGAGCCAGAGAAGCTATTTTGTTGCCGG
ATGTAGGCAAGGAAGCCAAGGATCGGTTGAGGAGATTGAAGCAGAAGGGC
CGAAATACTGCAGTTTATGGAGATTTTTAGATGCCTATCACAGGAGTCTA
CTTCATCCCCTCCAACCCAAATGCATCCACAGGGCTAGCGACTATCACAG
AGCGCCTACACACAGCCCTAGCAGACGAGCCAACATTAGTAGGCCGTTGG
TTCCTCGAACACCGACTGATGCGCGATACTCCATCATGTGTTCCTGCCTC
AGCATCCCAGCGCCAAGTACAACCGCGCTATATGCAATTCCTATCACTGT
CTTTTCACTCTAACCACGGCTTCATCTACACCTCTGAAGCACTAGAGAAA
AGCACTCATCATTCCACCACCAGTGTTAGCACCACGCCAGCTGGCTCACC
CACCAATTCTACTGCTCAAAGTGGAGCTCCAGGCGCAACAGCGCCCACCC
CTTCCACCCCATCTAATGCTGCTGCACAGTCAGGAGGACCAATGGTGATG
ACCACCGTGCCGCTTCCATCCTGTAATGCACTTTTCCAGCACTTCGGCTA
CGCCTGCCAGCCTTTCTGGTGCCATCGACACACGGTAACCGTACCAGGCG
GTGTGGTCTACGATGTGGGCGATTTCCGAGTCCGAGTGGGTGATGTACGA
CAGACTCAGCCAGCAGCGAGGGTGCGCGGAACAGTTGTGGAAATTGAATG
GCGGGGTCCGTGCATAGTTGATGCGATTTCAGCACCACGGAATTCGAGCG
ACGGACAAATAGCTGATGATGGCGACTCCGGGATTGATATGGCGTTCCCG
GATGCTATTGAAGACGCGGATATTGATGCAGAGTATGCGGCTAGTGCGGC
GTTGATTAGGGAGTTCTGGGCGAGACTCGGCATTGAAGGAGCCAGAGAAG
CTATTTTGTTGCCGGATGTAGGCAAGGAAGCCAAGGATCGGTTGAGGAGA
TTGAAGCAGAAGGGCCGAAATACTGCAGTTTATGGAGATTTTTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016592 | mediator complex |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003712 | transcription coregulator activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006357 | regulation of transcription by RNA polymerase II |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | EggNog:ENOG41 |
| DBxref | InterPro:IPR013921 |
| DBxref | PFAM:PF08612 |
| Product | TATA-binding related factor (TRF) of subunit 20 of Mediator complex family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000019.1 | supercontig | NKJJ01000019.1:1797878..1798919 + |
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