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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000019.1:2112278..2113162+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_7025-T1 ID=CAN33_7025-T1|Name=CAN33_7025-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=885bp|location=Sequence derived from alignment at NKJJ01000019.1:2112278..2113162+ (Aspergillus niger FDAARGOS_311)
ATGACTCAACCCCTCAACTTCCACATCTTCGGCGGCTCCAACATCCGCGC
CTCCTTATCCCCCACCATCCACAACGCCGCCTTCACCCACCACCATCTCT
CGCACACCTACACCACCGCAGAATGCACCTCCTTATCAGAAATGTCCCAT
CTCATCACCTCTCCCTCCTTCGGGGGTGCCAGCATCACAATGCCCCATAA
AATCGCCGCTTTCGACCACTGCACTGAAGTGAGCGATTCAGCGCGCGCCA
TTGGGGCCATCAATACCCTCGTTACTACTCGATCCCCACAAGCAAACAGC
AAGGTAGTAGTAAAAGGCGACAATACAGACTGGTCCGGCCTCTACACACT
CATCATCGACCATTTATCTAAAGAAGGTGTACATGCCGCAAAACCAACCG
GCAAAGTAGGCCTCGTCATCGGGGCAGGCGGTGCCGCGAGAGCCGGAGTG
TATGCGCTCTTACAGGCTCAGTTCTCGACGATTATTATTTGGAATCGGAC
TGTCGAGAAGGCGGAAAAGATTATTCAGGATTTTGATACCCTCAAGAGTG
AGGGAATCGAGATGAGGGCTGTGGGGGATGTTACGGGGATTGGACCTGTG
GATGTGGTTATTGGGACTATTCCTGGGGATGTTAAGGCGGAGGAGGACTT
TGAAGGGCTGTTTCAGGGATCGAAGATGGGGTTGTGTGTGGAGATGGCGT
ATAAGCCGAAGGTTACACCCCTGATGAGGGTTGCGGAGAGGCGGGGTTGG
GTGGTAAAGGATGGGTTGGAAGTGTTGTTGAGGCAGGGATTTGAGCAGTA
TCGCTTGTGGACGGGGTTGGAGGCTCCGGAGCTGGTGATGAGGGAGGCGA
TTGAGGAGAGGGATGGGGTGAGGTCTAAGGTTTGA back to topCoding sequence (CDS) from alignment at NKJJ01000019.1:2112278..2113162+ >CAN33_7025-T1 ID=CAN33_7025-T1|Name=CAN33_7025-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=885bp|location=Sequence derived from alignment at NKJJ01000019.1:2112278..2113162+ (Aspergillus niger FDAARGOS_311)
ATGACTCAACCCCTCAACTTCCACATCTTCGGCGGCTCCAACATCCGCGC
CTCCTTATCCCCCACCATCCACAACGCCGCCTTCACCCACCACCATCTCT
CGCACACCTACACCACCGCAGAATGCACCTCCTTATCAGAAATGTCCCAT
CTCATCACCTCTCCCTCCTTCGGGGGTGCCAGCATCACAATGCCCCATAA
AATCGCCGCTTTCGACCACTGCACTGAAGTGAGCGATTCAGCGCGCGCCA
TTGGGGCCATCAATACCCTCGTTACTACTCGATCCCCACAAGCAAACAGC
AAGGTAGTAGTAAAAGGCGACAATACAGACTGGTCCGGCCTCTACACACT
CATCATCGACCATTTATCTAAAGAAGGTGTACATGCCGCAAAACCAACCG
GCAAAGTAGGCCTCGTCATCGGGGCAGGCGGTGCCGCGAGAGCCGGAGTG
TATGCGCTCTTACAGGCTCAGTTCTCGACGATTATTATTTGGAATCGGAC
TGTCGAGAAGGCGGAAAAGATTATTCAGGATTTTGATACCCTCAAGAGTG
AGGGAATCGAGATGAGGGCTGTGGGGGATGTTACGGGGATTGGACCTGTG
GATGTGGTTATTGGGACTATTCCTGGGGATGTTAAGGCGGAGGAGGACTT
TGAAGGGCTGTTTCAGGGATCGAAGATGGGGTTGTGTGTGGAGATGGCGT
ATAAGCCGAAGGTTACACCCCTGATGAGGGTTGCGGAGAGGCGGGGTTGG
GTGGTAAAGGATGGGTTGGAAGTGTTGTTGAGGCAGGGATTTGAGCAGTA
TCGCTTGTGGACGGGGTTGGAGGCTCCGGAGCTGGTGATGAGGGAGGCGA
TTGAGGAGAGGGATGGGGTGAGGTCTAAGGTTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004764 | shikimate 3-dehydrogenase (NADP+) activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR006151 |
| DBxref | InterPro:IPR041121 |
| DBxref | InterPro:IPR013708 |
| DBxref | PFAM:PF08501 |
| DBxref | PFAM:PF18317 |
| Product | Shikimate dehydrogenase substrate binding domain family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000019.1 | supercontig | NKJJ01000019.1:2112278..2113162 + |
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