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CAN33_7240-T1, CAN33_7240-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_7240-T1
Unique NameCAN33_7240-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000019.1:2235754..2237134-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_7240-T1 ID=CAN33_7240-T1|Name=CAN33_7240-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1381bp|location=Sequence derived from alignment at NKJJ01000019.1:2235754..2237134- (Aspergillus niger FDAARGOS_311)
ATGGACCAGACCTTCGACCTCCCCGACTCGACCGATTGGCTTACAACGCC
ACTGTCACTCGTCGCGCCTCTCGAATCCGCCCTCCGTTGCCAGGTCTGTA
AGGACTTCTTCGATAACCCGGTGATTACTTCGTGCAGCCATACATTCTGC
TCACTTTGCATTCGGCGGTGTCTAAGCACAGAAGGCAAATGCCCCGCGTG
CCGCAGCTCGGATCAGGAATTGAAGTTGCGGCGCAACTGGGCTGTTCAGG
AACTGGTTGAGGCGTTCCAGAATGCTAGACCCAATGTTTTAGATCTGGCG
AGGAAGGCTGCTGCGCGGGGGAGTGATACTGAGGAGGGAGAGTCGGAGGA
ACCCGCACCGAAGAAGCGAAAGGTCGAGGCTGTAGATGGGCCTGCTGCGG
AGGGCGTCAGGACTCGATCGCAAACTCGGGGAATTGGCTCTCAGGAAGAT
CCTGTTGCGATTGAGGTGATTGAGGATAGTAATGATGATGAATATGTTCC
AGGTGTGTATGCTCATCGGCAAAGTTGCGCCGCATGCTAATCGCCACTGA
AGACGACGGACTGGTCGCGTGCCCAATCTGCAACCGGAGGATGAAGAATG
AAGCGGTGTTTCGACACTTGGATACATGCACTGGAGAGCCCGCGCCGCCC
AAACAAATGAATTTTGGGTAAGATATGTCTTTTGGAGCGTGTCTACATGT
GTGCTTCTAACTCGGAATTATAGATCGTTACAACCCATGCCACAACCGTC
GCAGAGAGCAAAAGACGCCCTGAATAAAACACCAGAACGACTGCCCATTA
TAAACTATTCTCTATTGAAAGATAATGTGCTCCGAAAGAAGTTAAAAGAT
TTGGGTATACCGAACACGGGCCCGAGGCCCCTTCTGCAACGACGTCACAC
AGAGTGGATGAATTTGTGGAATGCCAACTGCGACTCCAAAACGCCAAAGT
CCAAAAGGGAATTGCTGAGAGAACTGGATATCTGGGAACGCACGCAAGGC
GGCCAAGCGCAACTATCAGGGGACGTCACAGATACTGTCATGCGCAAAGA
CTTTGATGCGGCGGCGTGGTCAACGAGTCATGACGATGACTTCAAGCGGC
TCATTGCCAATGCGCGAAAAAAGAGCGAAGCGCAGGTGCGCACCACGATA
CCACAAGAACCTGTAGGCACAAATCAGGCAACCGACCAGCTTGCCAGTCC
GACAACGTATCAGCCTTCGAGTGTGCCTGTTGTTGAGCATACCGAAGCCA
TGCATGCGACGGAAGATGCCCACCCTCCGGAGAAGTTGACTGTAGATGAC
AAAACCGTTATTGTCCCTGAGGTCCAAGCGCAGACACTACAGGGCTCAGT
TGATAGCCAGATGACCAATGCGCAAAATTAA
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Coding sequence (CDS) from alignment at NKJJ01000019.1:2235754..2237134-

>CAN33_7240-T1 ID=CAN33_7240-T1|Name=CAN33_7240-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3825bp|location=Sequence derived from alignment at NKJJ01000019.1:2235754..2237134- (Aspergillus niger FDAARGOS_311)
ATCGTTACAACCCATGCCACAACCGTCGCAGAGAGCAAAAGACGCCCTGA
ATAAAACACCAGAACGACTGCCCATTATAAACTATTCTCTATTGAAAGAT
AATGTGCTCCGAAAGAAGTTAAAAGATTTGGGTATACCGAACACGGGCCC
GAGGCCCCTTCTGCAACGACGTCACACAGAGTGGATGAATTTGTGGAATG
CCAACTGCGACTCCAAAACGCCAAAGTCCAAAAGGGAATTGCTGAGAGAA
CTGGATATCTGGGAACGCACGCAAGGCGGCCAAGCGCAACTATCAGGGGA
CGTCACAGATACTGTCATGCGCAAAGACTTTGATGCGGCGGCGTGGTCAA
CGAGTCATGACGATGACTTCAAGCGGCTCATTGCCAATGCGCGAAAAAAG
AGCGAAGCGCAGGTGCGCACCACGATACCACAAGAACCTGTAGGCACAAA
TCAGGCAACCGACCAGCTTGCCAGTCCGACAACGTATCAGCCTTCGAGTG
TGCCTGTTGTTGAGCATACCGAAGCCATGCATGCGACGGAAGATGCCCAC
CCTCCGGAGAAGTTGACTGTAGATGACAAAACCGTTATTGTCCCTGAGGT
CCAAGCGCAGACACTACAGGGCTCAGTTGATAGCCAGATGACCAATGCGC
AAAATTAAACGACGGACTGGTCGCGTGCCCAATCTGCAACCGGAGGATGA
AGAATGAAGCGGTGTTTCGACACTTGGATACATGCACTGGAGAGCCCGCG
CCGCCCAAACAAATGAATTTTGGATGGACCAGACCTTCGACCTCCCCGAC
TCGACCGATTGGCTTACAACGCCACTGTCACTCGTCGCGCCTCTCGAATC
CGCCCTCCGTTGCCAGGTCTGTAAGGACTTCTTCGATAACCCGGTGATTA
CTTCGTGCAGCCATACATTCTGCTCACTTTGCATTCGGCGGTGTCTAAGC
ACAGAAGGCAAATGCCCCGCGTGCCGCAGCTCGGATCAGGAATTGAAGTT
GCGGCGCAACTGGGCTGTTCAGGAACTGGTTGAGGCGTTCCAGAATGCTA
GACCCAATGTTTTAGATCTGGCGAGGAAGGCTGCTGCGCGGGGGAGTGAT
ACTGAGGAGGGAGAGTCGGAGGAACCCGCACCGAAGAAGCGAAAGGTCGA
GGCTGTAGATGGGCCTGCTGCGGAGGGCGTCAGGACTCGATCGCAAACTC
GGGGAATTGGCTCTCAGGAAGATCCTGTTGCGATTGAGGTGATTGAGGAT
AGTAATGATGATGAATATGTTCCAGATCGTTACAACCCATGCCACAACCG
TCGCAGAGAGCAAAAGACGCCCTGAATAAAACACCAGAACGACTGCCCAT
TATAAACTATTCTCTATTGAAAGATAATGTGCTCCGAAAGAAGTTAAAAG
ATTTGGGTATACCGAACACGGGCCCGAGGCCCCTTCTGCAACGACGTCAC
ACAGAGTGGATGAATTTGTGGAATGCCAACTGCGACTCCAAAACGCCAAA
GTCCAAAAGGGAATTGCTGAGAGAACTGGATATCTGGGAACGCACGCAAG
GCGGCCAAGCGCAACTATCAGGGGACGTCACAGATACTGTCATGCGCAAA
GACTTTGATGCGGCGGCGTGGTCAACGAGTCATGACGATGACTTCAAGCG
GCTCATTGCCAATGCGCGAAAAAAGAGCGAAGCGCAGGTGCGCACCACGA
TACCACAAGAACCTGTAGGCACAAATCAGGCAACCGACCAGCTTGCCAGT
CCGACAACGTATCAGCCTTCGAGTGTGCCTGTTGTTGAGCATACCGAAGC
CATGCATGCGACGGAAGATGCCCACCCTCCGGAGAAGTTGACTGTAGATG
ACAAAACCGTTATTGTCCCTGAGGTCCAAGCGCAGACACTACAGGGCTCA
GTTGATAGCCAGATGACCAATGCGCAAAATTAAACGACGGACTGGTCGCG
TGCCCAATCTGCAACCGGAGGATGAAGAATGAAGCGGTGTTTCGACACTT
GGATACATGCACTGGAGAGCCCGCGCCGCCCAAACAAATGAATTTTGGAT
GGACCAGACCTTCGACCTCCCCGACTCGACCGATTGGCTTACAACGCCAC
TGTCACTCGTCGCGCCTCTCGAATCCGCCCTCCGTTGCCAGGTCTGTAAG
GACTTCTTCGATAACCCGGTGATTACTTCGTGCAGCCATACATTCTGCTC
ACTTTGCATTCGGCGGTGTCTAAGCACAGAAGGCAAATGCCCCGCGTGCC
GCAGCTCGGATCAGGAATTGAAGTTGCGGCGCAACTGGGCTGTTCAGGAA
CTGGTTGAGGCGTTCCAGAATGCTAGACCCAATGTTTTAGATCTGGCGAG
GAAGGCTGCTGCGCGGGGGAGTGATACTGAGGAGGGAGAGTCGGAGGAAC
CCGCACCGAAGAAGCGAAAGGTCGAGGCTGTAGATGGGCCTGCTGCGGAG
GGCGTCAGGACTCGATCGCAAACTCGGGGAATTGGCTCTCAGGAAGATCC
TGTTGCGATTGAGGTGATTGAGGATAGTAATGATGATGAATATGTTCCAG
ATCGTTACAACCCATGCCACAACCGTCGCAGAGAGCAAAAGACGCCCTGA
ATAAAACACCAGAACGACTGCCCATTATAAACTATTCTCTATTGAAAGAT
AATGTGCTCCGAAAGAAGTTAAAAGATTTGGGTATACCGAACACGGGCCC
GAGGCCCCTTCTGCAACGACGTCACACAGAGTGGATGAATTTGTGGAATG
CCAACTGCGACTCCAAAACGCCAAAGTCCAAAAGGGAATTGCTGAGAGAA
CTGGATATCTGGGAACGCACGCAAGGCGGCCAAGCGCAACTATCAGGGGA
CGTCACAGATACTGTCATGCGCAAAGACTTTGATGCGGCGGCGTGGTCAA
CGAGTCATGACGATGACTTCAAGCGGCTCATTGCCAATGCGCGAAAAAAG
AGCGAAGCGCAGGTGCGCACCACGATACCACAAGAACCTGTAGGCACAAA
TCAGGCAACCGACCAGCTTGCCAGTCCGACAACGTATCAGCCTTCGAGTG
TGCCTGTTGTTGAGCATACCGAAGCCATGCATGCGACGGAAGATGCCCAC
CCTCCGGAGAAGTTGACTGTAGATGACAAAACCGTTATTGTCCCTGAGGT
CCAAGCGCAGACACTACAGGGCTCAGTTGATAGCCAGATGACCAATGCGC
AAAATTAAACGACGGACTGGTCGCGTGCCCAATCTGCAACCGGAGGATGA
AGAATGAAGCGGTGTTTCGACACTTGGATACATGCACTGGAGAGCCCGCG
CCGCCCAAACAAATGAATTTTGGATGGACCAGACCTTCGACCTCCCCGAC
TCGACCGATTGGCTTACAACGCCACTGTCACTCGTCGCGCCTCTCGAATC
CGCCCTCCGTTGCCAGGTCTGTAAGGACTTCTTCGATAACCCGGTGATTA
CTTCGTGCAGCCATACATTCTGCTCACTTTGCATTCGGCGGTGTCTAAGC
ACAGAAGGCAAATGCCCCGCGTGCCGCAGCTCGGATCAGGAATTGAAGTT
GCGGCGCAACTGGGCTGTTCAGGAACTGGTTGAGGCGTTCCAGAATGCTA
GACCCAATGTTTTAGATCTGGCGAGGAAGGCTGCTGCGCGGGGGAGTGAT
ACTGAGGAGGGAGAGTCGGAGGAACCCGCACCGAAGAAGCGAAAGGTCGA
GGCTGTAGATGGGCCTGCTGCGGAGGGCGTCAGGACTCGATCGCAAACTC
GGGGAATTGGCTCTCAGGAAGATCCTGTTGCGATTGAGGTGATTGAGGAT
AGTAATGATGATGAATATGTTCCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006513protein monoubiquitination
GO:0006301postreplication repair
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003697single-stranded DNA binding
GO:0061630ubiquitin protein ligase activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RAD18CAN33_7240Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_7240-T1CAN33_7240-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_7240-T1.cdsCAN33_7240-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_7240-T1.exon3CAN33_7240-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_7240-T1.exon2CAN33_7240-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_7240-T1.exon1CAN33_7240-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR017907
DBxrefInterPro:IPR004580
DBxrefInterPro:IPR013083
DBxrefInterPro:IPR006642
DBxrefInterPro:IPR003034
DBxrefInterPro:IPR001841
DBxrefPFAM:PF13445
DBxrefPFAM:PF13920
DBxrefPFAM:PF13923
DBxrefPFAM:PF00097
DBxrefPFAM:PF02037
ProductE3 ubiquitin-protein ligase rad18
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000019.1supercontigNKJJ01000019.1:2235754..2237134 -
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