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CAN33_8880-T1, CAN33_8880-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_8880-T1
Unique NameCAN33_8880-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000012.1:642305..643306+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_8880-T1 ID=CAN33_8880-T1|Name=CAN33_8880-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1002bp|location=Sequence derived from alignment at NKJJ01000012.1:642305..643306+ (Aspergillus niger FDAARGOS_311)
ATGGGTCGCGTGATCCGCAACCAGAGGAAGGGTCGTGGATCCATTTTCAG
TGAGTGCGACCGCAGAGATCCTGAAGCGAAATTCGCAGCATCTCCAGATC
AATTTTTACTGATACAATTTTTCGCTCGACAGCGGCAAACACCCGTCTCA
ACAAGGCTCCTGCCCAGTTCCGCACCCTCGACTACGCCGAGCGTCATGGA
TACACTCGTGGTGTCGTGAAGGAGATCATCCACGACCCCGGCCGTGGTGC
TCCCCTCGCCAAGGTCCAGTTCCGTCACCCCTACAAGTTCAAGACCATCA
CCGAGACCTTCATCGCCAACGAGGGCATGTACACCGGTCAATTCGTCTAC
GCCGGAAAGAACGCCGCCCTGACTGTCGGAAACGTCCTTCCCCTCGCCTC
CGTCCCTGAGGGTACCGTTGTGACCAACGTCGAGGAGAAGGCTGGTGACC
GTGGTGCTCTTGGTCGTACCTCCGGTAACTACGTTACCGTCATCGGCCAC
AACCCCGAGGAGGGCAAGACCCGTGTCAAGCTTCCCTCCGGTGCCAAGAA
GGTCGTCAAGAACACCGCCCGTGGTATGATCGGTATCGTCGCTGGTGGTG
GTCGTACCGACAAGCCTTTGCTGAGTATGTCTCCGGAAATCTGGCTCCGT
TGAATCACTCTTCGGAGAGAATACGGTTAAAGAAGAGGACTTTGATGGCT
AACTCATTCCCTACAGAGGCTTCTCGCGCCAAGCACAAGTTCGCTGTCAA
GCGCAACTCTTGGCCCAAGACCCGTGGTGTTGCCATGAACCCCGTGGATC
ACGTAAGGCTCCCTTCAATGATTTTGTCGATTTATCTACAGATTCTGACA
TGTTTTCTCTACAGCCTCACGGTGGTGGTAACCACCAGCACATTGGTAAG
GCCTCGACCATCTCCCGCTACGCTGCCCAGGGTCAAAAAGCCGGTCTTAT
CGCTGCCCGGAGAACTGGTCTGCTCCGTGGTACCCAGAAGACCAAGGAGT
AA
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Coding sequence (CDS) from alignment at NKJJ01000012.1:642305..643306+

>CAN33_8880-T1 ID=CAN33_8880-T1|Name=CAN33_8880-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3060bp|location=Sequence derived from alignment at NKJJ01000012.1:642305..643306+ (Aspergillus niger FDAARGOS_311)
ATGGGTCGCGTGATCCGCAACCAGAGGAAGGGTCGTGGATCCATTTTCAC
GGCAAACACCCGTCTCAACAAGGCTCCTGCCCAGTTCCGCACCCTCGACT
ACGCCGAGCGTCATGGATACACTCGTGGTGTCGTGAAGGAGATCATCCAC
GACCCCGGCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGTCACCCCTA
CAAGTTCAAGACCATCACCGAGACCTTCATCGCCAACGAGGGCATGTACA
CCGGTCAATTCGTCTACGCCGGAAAGAACGCCGCCCTGACTGTCGGAAAC
GTCCTTCCCCTCGCCTCCGTCCCTGAGGGTACCGTTGTGACCAACGTCGA
GGAGAAGGCTGGTGACCGTGGTGCTCTTGGTCGTACCTCCGGTAACTACG
TTACCGTCATCGGCCACAACCCCGAGGAGGGCAAGACCCGTGTCAAGCTT
CCCTCCGGTGCCAAGAAGGTCGTCAAGAACACCGCCCGTGGTATGATCGG
TATCGTCGCTGGTGGTGGTCGTACCGACAAGCCTTTGCTGAAGGCTTCTC
GCGCCAAGCACAAGTTCGCTGTCAAGCGCAACTCTTGGCCCAAGACCCGT
GGTGTTGCCATGAACCCCGTGGATCACCCTCACGGTGGTGGTAACCACCA
GCACATTGGTAAGGCCTCGACCATCTCCCGCTACGCTGCCCAGGGTCAAA
AAGCCGGTCTTATCGCTGCCCGGAGAACTGGTCTGCTCCGTGGTACCCAG
AAGACCAAGGAGTAAATGGGTCGCGTGATCCGCAACCAGAGGAAGGGTCG
TGGATCCATTTTCACGGCAAACACCCGTCTCAACAAGGCTCCTGCCCAGT
TCCGCACCCTCGACTACGCCGAGCGTCATGGATACACTCGTGGTGTCGTG
AAGGAGATCATCCACGACCCCGGCCGTGGTGCTCCCCTCGCCAAGGTCCA
GTTCCGTCACCCCTACAAGTTCAAGACCATCACCGAGACCTTCATCGCCA
ACGAGGGCATGTACACCGGTCAATTCGTCTACGCCGGAAAGAACGCCGCC
CTGACTGTCGGAAACGTCCTTCCCCTCGCCTCCGTCCCTGAGGGTACCGT
TGTGACCAACGTCGAGGAGAAGGCTGGTGACCGTGGTGCTCTTGGTCGTA
CCTCCGGTAACTACGTTACCGTCATCGGCCACAACCCCGAGGAGGGCAAG
ACCCGTGTCAAGCTTCCCTCCGGTGCCAAGAAGGTCGTCAAGAACACCGC
CCGTGGTATGATCGGTATCGTCGCTGGTGGTGGTCGTACCGACAAGCCTT
TGCTGAAGGCTTCTCGCGCCAAGCACAAGTTCGCTGTCAAGCGCAACTCT
TGGCCCAAGACCCGTGGTGTTGCCATGAACCCCGTGGATCACCCTCACGG
TGGTGGTAACCACCAGCACATTGGTAAGGCCTCGACCATCTCCCGCTACG
CTGCCCAGGGTCAAAAAGCCGGTCTTATCGCTGCCCGGAGAACTGGTCTG
CTCCGTGGTACCCAGAAGACCAAGGAGTAAATGGGTCGCGTGATCCGCAA
CCAGAGGAAGGGTCGTGGATCCATTTTCACGGCAAACACCCGTCTCAACA
AGGCTCCTGCCCAGTTCCGCACCCTCGACTACGCCGAGCGTCATGGATAC
ACTCGTGGTGTCGTGAAGGAGATCATCCACGACCCCGGCCGTGGTGCTCC
CCTCGCCAAGGTCCAGTTCCGTCACCCCTACAAGTTCAAGACCATCACCG
AGACCTTCATCGCCAACGAGGGCATGTACACCGGTCAATTCGTCTACGCC
GGAAAGAACGCCGCCCTGACTGTCGGAAACGTCCTTCCCCTCGCCTCCGT
CCCTGAGGGTACCGTTGTGACCAACGTCGAGGAGAAGGCTGGTGACCGTG
GTGCTCTTGGTCGTACCTCCGGTAACTACGTTACCGTCATCGGCCACAAC
CCCGAGGAGGGCAAGACCCGTGTCAAGCTTCCCTCCGGTGCCAAGAAGGT
CGTCAAGAACACCGCCCGTGGTATGATCGGTATCGTCGCTGGTGGTGGTC
GTACCGACAAGCCTTTGCTGAAGGCTTCTCGCGCCAAGCACAAGTTCGCT
GTCAAGCGCAACTCTTGGCCCAAGACCCGTGGTGTTGCCATGAACCCCGT
GGATCACCCTCACGGTGGTGGTAACCACCAGCACATTGGTAAGGCCTCGA
CCATCTCCCGCTACGCTGCCCAGGGTCAAAAAGCCGGTCTTATCGCTGCC
CGGAGAACTGGTCTGCTCCGTGGTACCCAGAAGACCAAGGAGTAAATGGG
TCGCGTGATCCGCAACCAGAGGAAGGGTCGTGGATCCATTTTCACGGCAA
ACACCCGTCTCAACAAGGCTCCTGCCCAGTTCCGCACCCTCGACTACGCC
GAGCGTCATGGATACACTCGTGGTGTCGTGAAGGAGATCATCCACGACCC
CGGCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGTCACCCCTACAAGT
TCAAGACCATCACCGAGACCTTCATCGCCAACGAGGGCATGTACACCGGT
CAATTCGTCTACGCCGGAAAGAACGCCGCCCTGACTGTCGGAAACGTCCT
TCCCCTCGCCTCCGTCCCTGAGGGTACCGTTGTGACCAACGTCGAGGAGA
AGGCTGGTGACCGTGGTGCTCTTGGTCGTACCTCCGGTAACTACGTTACC
GTCATCGGCCACAACCCCGAGGAGGGCAAGACCCGTGTCAAGCTTCCCTC
CGGTGCCAAGAAGGTCGTCAAGAACACCGCCCGTGGTATGATCGGTATCG
TCGCTGGTGGTGGTCGTACCGACAAGCCTTTGCTGAAGGCTTCTCGCGCC
AAGCACAAGTTCGCTGTCAAGCGCAACTCTTGGCCCAAGACCCGTGGTGT
TGCCATGAACCCCGTGGATCACCCTCACGGTGGTGGTAACCACCAGCACA
TTGGTAAGGCCTCGACCATCTCCCGCTACGCTGCCCAGGGTCAAAAAGCC
GGTCTTATCGCTGCCCGGAGAACTGGTCTGCTCCGTGGTACCCAGAAGAC
CAAGGAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL2CAN33_8880Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_8880-T1.exon1CAN33_8880-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_8880-T1.exon2CAN33_8880-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_8880-T1.exon3CAN33_8880-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_8880-T1.exon4CAN33_8880-T1.exon4Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_8880-T1.cdsCAN33_8880-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_8880-T1CAN33_8880-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR008991
DBxrefInterPro:IPR022671
DBxrefInterPro:IPR014722
DBxrefInterPro:IPR022666
DBxrefInterPro:IPR014726
DBxrefInterPro:IPR002171
DBxrefInterPro:IPR022669
DBxrefPFAM:PF03947
DBxrefPFAM:PF00181
Product60S ribosomal protein L2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000012.1supercontigNKJJ01000012.1:642305..643306 +
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