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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000012.1:745805..746599- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_9015-T1 ID=CAN33_9015-T1|Name=CAN33_9015-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=795bp|location=Sequence derived from alignment at NKJJ01000012.1:745805..746599- (Aspergillus niger FDAARGOS_311)
ATGGCTGACACACCTGCACCTCACTCCGGTCCCATGTTGACCTTCATCAG
TGGCGACGGCGTGCACATTGAGTGTGGTAAGTGCACGCGTTTCAATAAGC
TCAGCAGACGCGCTCAGTGTCTGTGTCACGATGAGACCATATATGCTAAC
ATGTGTGTGAAAATACAGAACGCGATGTTGCCGAGCGCTCCCTTCTCATC
AAGAACATGCTGGAAGATCTGGGTGGCGCCAACGAGGAGATCCCGATCCC
TAATGTGAGTTATCCGTTCGAAGTAAAATGGCCATTGGTGACCATAGCTA
ACCACACCCGCAACACAGGTCAACGAAGCTGTCTTGAAGAAGGTCATCGA
ATGGTGCAGACATCACAAGAACGACCCCCCAGCACTGGCGAGGAGGATGA
CTCCCGCCGCAAGACCACCGACATCGACGAGTGGGATCAGAAATTTACCC
AGGTCGATCAAGAAATGTTGTTCGAGATCATTCTGGTACGCGTTACGAAC
TATGATCTACAAAAGCCCCTTAGCTAACTTGGCGCTTAACTTGATAGGCC
GCAAACTACCTCGACATTAAGGGTCTTCTGGACGTCGGATGCAAAACCGT
TGCGAACATGATCAAGGGCAAGTCTCCGGAAGAGATCCGCAAGACCTTCA
ACATCCAGAACGATTTCACCCCCGAGGAGGAGGATCAGATCCGCCGTGAG
AACGAGTGGGCCGAGGAGTAAGTTCCTTACAAACCCATCCCCCGCTATCT
TACCACCTGATCGTATGCTAACATTGTACTTGCTATAGTCGCTAA back to topCoding sequence (CDS) from alignment at NKJJ01000012.1:745805..746599- >CAN33_9015-T1 ID=CAN33_9015-T1|Name=CAN33_9015-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2862bp|location=Sequence derived from alignment at NKJJ01000012.1:745805..746599- (Aspergillus niger FDAARGOS_311)
TCGCTAAGCCGCAAACTACCTCGACATTAAGGGTCTTCTGGACGTCGGAT
GCAAAACCGTTGCGAACATGATCAAGGGCAAGTCTCCGGAAGAGATCCGC
AAGACCTTCAACATCCAGAACGATTTCACCCCCGAGGAGGAGGATCAGAT
CCGCCGTGAGAACGAGTGGGCCGAGGACACTGGCGAGGAGGATGACTCCC
GCCGCAAGACCACCGACATCGACGAGTGGGATCAGAAATTTACCCAGGTC
GATCAAGAAATGTTGTTCGAGATCATTCTGGTCAACGAAGCTGTCTTGAA
GAAGGTCATCGAATGAACGCGATGTTGCCGAGCGCTCCCTTCTCATCAAG
AACATGCTGGAAGATCTGGGTGGCGCCAACGAGGAGATCCCGATCCCTAA
TATGGCTGACACACCTGCACCTCACTCCGGTCCCATGTTGACCTTCATCA
GTGGCGACGGCGTGCACATTGAGTGTGTCGCTAAGCCGCAAACTACCTCG
ACATTAAGGGTCTTCTGGACGTCGGATGCAAAACCGTTGCGAACATGATC
AAGGGCAAGTCTCCGGAAGAGATCCGCAAGACCTTCAACATCCAGAACGA
TTTCACCCCCGAGGAGGAGGATCAGATCCGCCGTGAGAACGAGTGGGCCG
AGGACACTGGCGAGGAGGATGACTCCCGCCGCAAGACCACCGACATCGAC
GAGTGGGATCAGAAATTTACCCAGGTCGATCAAGAAATGTTGTTCGAGAT
CATTCTGGTCAACGAAGCTGTCTTGAAGAAGGTCATCGAATGAACGCGAT
GTTGCCGAGCGCTCCCTTCTCATCAAGAACATGCTGGAAGATCTGGGTGG
CGCCAACGAGGAGATCCCGATCCCTAATATGGCTGACACACCTGCACCTC
ACTCCGGTCCCATGTTGACCTTCATCAGTGGCGACGGCGTGCACATTGAG
TGTGTCGCTAAGCCGCAAACTACCTCGACATTAAGGGTCTTCTGGACGTC
GGATGCAAAACCGTTGCGAACATGATCAAGGGCAAGTCTCCGGAAGAGAT
CCGCAAGACCTTCAACATCCAGAACGATTTCACCCCCGAGGAGGAGGATC
AGATCCGCCGTGAGAACGAGTGGGCCGAGGACACTGGCGAGGAGGATGAC
TCCCGCCGCAAGACCACCGACATCGACGAGTGGGATCAGAAATTTACCCA
GGTCGATCAAGAAATGTTGTTCGAGATCATTCTGGTCAACGAAGCTGTCT
TGAAGAAGGTCATCGAATGAACGCGATGTTGCCGAGCGCTCCCTTCTCAT
CAAGAACATGCTGGAAGATCTGGGTGGCGCCAACGAGGAGATCCCGATCC
CTAATATGGCTGACACACCTGCACCTCACTCCGGTCCCATGTTGACCTTC
ATCAGTGGCGACGGCGTGCACATTGAGTGTGTCGCTAAGCCGCAAACTAC
CTCGACATTAAGGGTCTTCTGGACGTCGGATGCAAAACCGTTGCGAACAT
GATCAAGGGCAAGTCTCCGGAAGAGATCCGCAAGACCTTCAACATCCAGA
ACGATTTCACCCCCGAGGAGGAGGATCAGATCCGCCGTGAGAACGAGTGG
GCCGAGGACACTGGCGAGGAGGATGACTCCCGCCGCAAGACCACCGACAT
CGACGAGTGGGATCAGAAATTTACCCAGGTCGATCAAGAAATGTTGTTCG
AGATCATTCTGGTCAACGAAGCTGTCTTGAAGAAGGTCATCGAATGAACG
CGATGTTGCCGAGCGCTCCCTTCTCATCAAGAACATGCTGGAAGATCTGG
GTGGCGCCAACGAGGAGATCCCGATCCCTAATATGGCTGACACACCTGCA
CCTCACTCCGGTCCCATGTTGACCTTCATCAGTGGCGACGGCGTGCACAT
TGAGTGTGTCGCTAAGCCGCAAACTACCTCGACATTAAGGGTCTTCTGGA
CGTCGGATGCAAAACCGTTGCGAACATGATCAAGGGCAAGTCTCCGGAAG
AGATCCGCAAGACCTTCAACATCCAGAACGATTTCACCCCCGAGGAGGAG
GATCAGATCCGCCGTGAGAACGAGTGGGCCGAGGACACTGGCGAGGAGGA
TGACTCCCGCCGCAAGACCACCGACATCGACGAGTGGGATCAGAAATTTA
CCCAGGTCGATCAAGAAATGTTGTTCGAGATCATTCTGGTCAACGAAGCT
GTCTTGAAGAAGGTCATCGAATGAACGCGATGTTGCCGAGCGCTCCCTTC
TCATCAAGAACATGCTGGAAGATCTGGGTGGCGCCAACGAGGAGATCCCG
ATCCCTAATATGGCTGACACACCTGCACCTCACTCCGGTCCCATGTTGAC
CTTCATCAGTGGCGACGGCGTGCACATTGAGTGTGTCGCTAAGCCGCAAA
CTACCTCGACATTAAGGGTCTTCTGGACGTCGGATGCAAAACCGTTGCGA
ACATGATCAAGGGCAAGTCTCCGGAAGAGATCCGCAAGACCTTCAACATC
CAGAACGATTTCACCCCCGAGGAGGAGGATCAGATCCGCCGTGAGAACGA
GTGGGCCGAGGACACTGGCGAGGAGGATGACTCCCGCCGCAAGACCACCG
ACATCGACGAGTGGGATCAGAAATTTACCCAGGTCGATCAAGAAATGTTG
TTCGAGATCATTCTGGTCAACGAAGCTGTCTTGAAGAAGGTCATCGAATG
AACGCGATGTTGCCGAGCGCTCCCTTCTCATCAAGAACATGCTGGAAGAT
CTGGGTGGCGCCAACGAGGAGATCCCGATCCCTAATATGGCTGACACACC
TGCACCTCACTCCGGTCCCATGTTGACCTTCATCAGTGGCGACGGCGTGC
ACATTGAGTGTG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264ZWF |
| DBxref | InterPro:IPR011333 |
| DBxref | InterPro:IPR036296 |
| DBxref | InterPro:IPR016073 |
| DBxref | InterPro:IPR016897 |
| DBxref | InterPro:IPR016072 |
| DBxref | InterPro:IPR001232 |
| DBxref | PFAM:PF03931 |
| DBxref | PFAM:PF01466 |
| Product | Skp1 family dimerization domain family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000012.1 | supercontig | NKJJ01000012.1:745805..746599 - |
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