You are here

Home

CAN33_9210-T1, CAN33_9210-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_9210-T1
Unique NameCAN33_9210-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000012.1:879230..880103+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_9210-T1 ID=CAN33_9210-T1|Name=CAN33_9210-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=874bp|location=Sequence derived from alignment at NKJJ01000012.1:879230..880103+ (Aspergillus niger FDAARGOS_311)
ATGGCTCCCAAGGTGGAAAACAAGCAAGGTAGGTACAATTTATGCGATTC
ATCCGTCTTCTTGAAATTTGCAGATTTGTTCTTGTCGAAAACCCGGTTTT
GTGATCCTCGAATGGCATCTACATGTGGCGGTACTTCGGGGGATAAGGCC
CTCTCAGCACGAACGAAAAAAAGGCATTCCCGATGAACGATTCGAGCCCT
GTGTTTCCCCCGTTATTGTCAACTTGCATGGATTTTATTTCGAGCGAGCG
ATGGGCTATATTTTATTTTGAAGTGACGGACGGGCTGACATTCTGGATCT
ATAGGCAAGACCAAGCCCAGCGACAAGGCTGGTGCTGCCGCCAAGGCAGT
CATTAAGGGTGCTGGCGTACGTTCTCACAAGGCTTCAAATCCGCCCATGC
TCTGTTCGGTGCTAAATGTCATATAATTTTTCCAGGCGCACAAGGCTCGT
AAGGTCCGCACCTCTACGACCTTCCACCGCCCCAAGACCCTTCAGCTTTC
CCGGTCGCCCAAGTACCCCGCAAGTCGATCCCCCATGTCCCTCGCCTCGA
TGCGCACAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCCATGAAGA
AGATCGAGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAAGTCCAAC
AAGCGCCAGATCAAGCTCGCCCTCAAGAAGCTGTATGACGTTGACACCGT
CAAGGTCAACACTCTCGTCAGGTACGACGACCTATCCCATAATCATTGAT
GTACTACAGAAGTCGGAATATCTAACCTTCCTTTAGGCCCGATGGACTGA
AGAAGGCCTTCGCCCGTCTAACCCCTGACGTTGATGCTCTGGACATCGCT
GCCACCAAGCTTGCCATCGTCTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000012.1:879230..880103+

>CAN33_9210-T1 ID=CAN33_9210-T1|Name=CAN33_9210-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1932bp|location=Sequence derived from alignment at NKJJ01000012.1:879230..880103+ (Aspergillus niger FDAARGOS_311)
ATGGCTCCCAAGGTGGAAAACAAGCAAGGCAAGACCAAGCCCAGCGACAA
GGCTGGTGCTGCCGCCAAGGCAGTCATTAAGGGTGCTGGCGTACGTTCTC
ACAAGGCTTCAAATCCGCCCATGCTCTGTCCGCACCTCTACGACCTTCCA
CCGCCCCAAGACCCTTCAGCTTTCCCGGTCGCCCAAGTACCCCGCAAGTC
GATCCCCCATGTCCCTCGCCTCGATGCGCACAAGGTCATCCTCTACCCTC
TCAACACCGAGAGCGCCATGAAGAAGATCGAGGAGAACAACACCCTGGTC
TTCATCGTCGACGTCAAGTCCAACAAGCGCCAGATCAAGCTCGCCCTCAA
GAAGCTGTATGACGTTGACACCGTCAAGGTCAACACTCTCGTCAGGCCCG
ATGGACTGAAGAAGGCCTTCGCCCGTCTAACCCCTGACGTTGATGCTCTG
GACATCGCTGCCACCAAGCTTGCCATCGTCTAGATGGCTCCCAAGGTGGA
AAACAAGCAAGGCAAGACCAAGCCCAGCGACAAGGCTGGTGCTGCCGCCA
AGGCAGTCATTAAGGGTGCTGGCGTACGTTCTCACAAGGCTTCAAATCCG
CCCATGCTCTGTCCGCACCTCTACGACCTTCCACCGCCCCAAGACCCTTC
AGCTTTCCCGGTCGCCCAAGTACCCCGCAAGTCGATCCCCCATGTCCCTC
GCCTCGATGCGCACAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCC
ATGAAGAAGATCGAGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAA
GTCCAACAAGCGCCAGATCAAGCTCGCCCTCAAGAAGCTGTATGACGTTG
ACACCGTCAAGGTCAACACTCTCGTCAGGCCCGATGGACTGAAGAAGGCC
TTCGCCCGTCTAACCCCTGACGTTGATGCTCTGGACATCGCTGCCACCAA
GCTTGCCATCGTCTAGATGGCTCCCAAGGTGGAAAACAAGCAAGGCAAGA
CCAAGCCCAGCGACAAGGCTGGTGCTGCCGCCAAGGCAGTCATTAAGGGT
GCTGGCGTACGTTCTCACAAGGCTTCAAATCCGCCCATGCTCTGTCCGCA
CCTCTACGACCTTCCACCGCCCCAAGACCCTTCAGCTTTCCCGGTCGCCC
AAGTACCCCGCAAGTCGATCCCCCATGTCCCTCGCCTCGATGCGCACAAG
GTCATCCTCTACCCTCTCAACACCGAGAGCGCCATGAAGAAGATCGAGGA
GAACAACACCCTGGTCTTCATCGTCGACGTCAAGTCCAACAAGCGCCAGA
TCAAGCTCGCCCTCAAGAAGCTGTATGACGTTGACACCGTCAAGGTCAAC
ACTCTCGTCAGGCCCGATGGACTGAAGAAGGCCTTCGCCCGTCTAACCCC
TGACGTTGATGCTCTGGACATCGCTGCCACCAAGCTTGCCATCGTCTAGA
TGGCTCCCAAGGTGGAAAACAAGCAAGGCAAGACCAAGCCCAGCGACAAG
GCTGGTGCTGCCGCCAAGGCAGTCATTAAGGGTGCTGGCGTACGTTCTCA
CAAGGCTTCAAATCCGCCCATGCTCTGTCCGCACCTCTACGACCTTCCAC
CGCCCCAAGACCCTTCAGCTTTCCCGGTCGCCCAAGTACCCCGCAAGTCG
ATCCCCCATGTCCCTCGCCTCGATGCGCACAAGGTCATCCTCTACCCTCT
CAACACCGAGAGCGCCATGAAGAAGATCGAGGAGAACAACACCCTGGTCT
TCATCGTCGACGTCAAGTCCAACAAGCGCCAGATCAAGCTCGCCCTCAAG
AAGCTGTATGACGTTGACACCGTCAAGGTCAACACTCTCGTCAGGCCCGA
TGGACTGAAGAAGGCCTTCGCCCGTCTAACCCCTGACGTTGATGCTCTGG
ACATCGCTGCCACCAAGCTTGCCATCGTCTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_9210CAN33_9210Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_9210-T1.exon1CAN33_9210-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_9210-T1.exon2CAN33_9210-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_9210-T1.exon3CAN33_9210-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_9210-T1.exon4CAN33_9210-T1.exon4Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_9210-T1.cdsCAN33_9210-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_9210-T1CAN33_9210-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG092657YR
DBxrefInterPro:IPR012678
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR013025
DBxrefPFAM:PF00276
ProductRibosomal protein L23 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000012.1supercontigNKJJ01000012.1:879230..880103 +
Powered by Drupal