You are here

Home

CAN33_9275-T1, CAN33_9275-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_9275-T1
Unique NameCAN33_9275-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000012.1:917342..918087-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_9275-T1 ID=CAN33_9275-T1|Name=CAN33_9275-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=746bp|location=Sequence derived from alignment at NKJJ01000012.1:917342..918087- (Aspergillus niger FDAARGOS_311)
ATGCCTAGTGCACCGAAGCAGCGCAAAATAGCTATTGTTGGCAGTCGCTC
TGTGGGTATGGCCTCCTATCTCTATGAAAAGCCTTGCTTGTTTGGTTTAC
TCATACTCACTAAATCTTTTCCAGGTAAATCTTCTCTTACAGTTCGATTT
GTTGAACATCATTTTGTAGAAAGCTACTATCCAACGATCGAAAACACTTT
CAGTCGAATCATCAAATACAACGGCCAAGATTATGCCACTGAAATCGTTG
ACACAGCTGGTCAGGTATGGAGAAAATCTGACCCTGATCCTAGAGTTTCC
GGTATATGGCTAATACTGCTGTAGGACGAGTACAGTATATTGAACTCCAA
GCATTTCATCGGAATACATGGGTATATTATTGTCTACTCGGTGGCTTCAC
GCCAGTCGTTCGACATGGTGAGGGTCATACGTGACAAGATTCTGAACCAT
CTTGTGAGTATCTCATTTGTACCTTGCAGCCACCATAGTCGCTGACATGA
AATAAGGGTGCCGATCATGTACCCCTTGTGCTTGTCGGAAATAAAAGCGA
TCTCAAATCTGAGCAACGCCAGGTGTCTCTAGATGAAGGCCGGCAGCTTT
GTGAAGAATTCCATTGTGCATTTACTGAGGCTAGTGCTCGTCTCGACTAT
AATGTTGCGAAAGCGTTTGACTTAATGATCGGGGAAATCGAAAAGTCGCA
AAACCCATCACAGCCGGCAGGAGGCAACAAATGCGCTGTAATGTGA
back to top

Coding sequence (CDS) from alignment at NKJJ01000012.1:917342..918087-

>CAN33_9275-T1 ID=CAN33_9275-T1|Name=CAN33_9275-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2256bp|location=Sequence derived from alignment at NKJJ01000012.1:917342..918087- (Aspergillus niger FDAARGOS_311)
GGTGCCGATCATGTACCCCTTGTGCTTGTCGGAAATAAAAGCGATCTCAA
ATCTGAGCAACGCCAGGTGTCTCTAGATGAAGGCCGGCAGCTTTGTGAAG
AATTCCATTGTGCATTTACTGAGGCTAGTGCTCGTCTCGACTATAATGTT
GCGAAAGCGTTTGACTTAATGATCGGGGAAATCGAAAAGTCGCAAAACCC
ATCACAGCCGGCAGGAGGCAACAAATGCGCTGTAATGTGAGACGAGTACA
GTATATTGAACTCCAAGCATTTCATCGGAATACATGGGTATATTATTGTC
TACTCGGTGGCTTCACGCCAGTCGTTCGACATGGTGAGGGTCATACGTGA
CAAGATTCTGAACCATCTTGTAAATCTTCTCTTACAGTTCGATTTGTTGA
ACATCATTTTGTAGAAAGCTACTATCCAACGATCGAAAACACTTTCAGTC
GAATCATCAAATACAACGGCCAAGATTATGCCACTGAAATCGTTGACACA
GCTGGTCAGATGCCTAGTGCACCGAAGCAGCGCAAAATAGCTATTGTTGG
CAGTCGCTCTGTGGGGTGCCGATCATGTACCCCTTGTGCTTGTCGGAAAT
AAAAGCGATCTCAAATCTGAGCAACGCCAGGTGTCTCTAGATGAAGGCCG
GCAGCTTTGTGAAGAATTCCATTGTGCATTTACTGAGGCTAGTGCTCGTC
TCGACTATAATGTTGCGAAAGCGTTTGACTTAATGATCGGGGAAATCGAA
AAGTCGCAAAACCCATCACAGCCGGCAGGAGGCAACAAATGCGCTGTAAT
GTGAGACGAGTACAGTATATTGAACTCCAAGCATTTCATCGGAATACATG
GGTATATTATTGTCTACTCGGTGGCTTCACGCCAGTCGTTCGACATGGTG
AGGGTCATACGTGACAAGATTCTGAACCATCTTGTAAATCTTCTCTTACA
GTTCGATTTGTTGAACATCATTTTGTAGAAAGCTACTATCCAACGATCGA
AAACACTTTCAGTCGAATCATCAAATACAACGGCCAAGATTATGCCACTG
AAATCGTTGACACAGCTGGTCAGATGCCTAGTGCACCGAAGCAGCGCAAA
ATAGCTATTGTTGGCAGTCGCTCTGTGGGGTGCCGATCATGTACCCCTTG
TGCTTGTCGGAAATAAAAGCGATCTCAAATCTGAGCAACGCCAGGTGTCT
CTAGATGAAGGCCGGCAGCTTTGTGAAGAATTCCATTGTGCATTTACTGA
GGCTAGTGCTCGTCTCGACTATAATGTTGCGAAAGCGTTTGACTTAATGA
TCGGGGAAATCGAAAAGTCGCAAAACCCATCACAGCCGGCAGGAGGCAAC
AAATGCGCTGTAATGTGAGACGAGTACAGTATATTGAACTCCAAGCATTT
CATCGGAATACATGGGTATATTATTGTCTACTCGGTGGCTTCACGCCAGT
CGTTCGACATGGTGAGGGTCATACGTGACAAGATTCTGAACCATCTTGTA
AATCTTCTCTTACAGTTCGATTTGTTGAACATCATTTTGTAGAAAGCTAC
TATCCAACGATCGAAAACACTTTCAGTCGAATCATCAAATACAACGGCCA
AGATTATGCCACTGAAATCGTTGACACAGCTGGTCAGATGCCTAGTGCAC
CGAAGCAGCGCAAAATAGCTATTGTTGGCAGTCGCTCTGTGGGGTGCCGA
TCATGTACCCCTTGTGCTTGTCGGAAATAAAAGCGATCTCAAATCTGAGC
AACGCCAGGTGTCTCTAGATGAAGGCCGGCAGCTTTGTGAAGAATTCCAT
TGTGCATTTACTGAGGCTAGTGCTCGTCTCGACTATAATGTTGCGAAAGC
GTTTGACTTAATGATCGGGGAAATCGAAAAGTCGCAAAACCCATCACAGC
CGGCAGGAGGCAACAAATGCGCTGTAATGTGAGACGAGTACAGTATATTG
AACTCCAAGCATTTCATCGGAATACATGGGTATATTATTGTCTACTCGGT
GGCTTCACGCCAGTCGTTCGACATGGTGAGGGTCATACGTGACAAGATTC
TGAACCATCTTGTAAATCTTCTCTTACAGTTCGATTTGTTGAACATCATT
TTGTAGAAAGCTACTATCCAACGATCGAAAACACTTTCAGTCGAATCATC
AAATACAACGGCCAAGATTATGCCACTGAAATCGTTGACACAGCTGGTCA
GATGCCTAGTGCACCGAAGCAGCGCAAAATAGCTATTGTTGGCAGTCGCT
CTGTGG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RHB1CAN33_9275Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_9275-T1CAN33_9275-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_9275-T1.cdsCAN33_9275-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_9275-T1.exon4CAN33_9275-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_9275-T1.exon3CAN33_9275-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_9275-T1.exon2CAN33_9275-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_9275-T1.exon1CAN33_9275-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR020849
DBxrefInterPro:IPR005225
DBxrefInterPro:IPR001806
DBxrefPFAM:PF08477
DBxrefPFAM:PF00071
DBxrefPFAM:PF01926
DBxrefPFAM:PF00025
ProductGTP-binding protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000012.1supercontigNKJJ01000012.1:917342..918087 -
Powered by Drupal