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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC12F:167205..168991- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000006-T1 ID=KJC3_000006-T1|Name=KJC3_000006-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1787bp|location=Sequence derived from alignment at JC12F:167205..168991- (Aspergillus niger KJC3) CGGGAGATGGATGCAGATATGAGGAGAGGTTGCCTCAACGTAGGTGATGG
TCTCCAAGTACCTATTCATGAGATCTATCTAATGGCAAGCCCTAGTACAT
AAATGAATATTGTCAGTTCGAGAATGGCTTTGCGTAAGCACCCACTGCCA
AAGCCGACGGACCAGTCGGAGGATCTTTTGCAGTATCTTGTGTCCCATCT
TGTGCATTGCGATTCGGTGTTCGCGGACGAAAAGCAGCGTCTCTACGCCC
TCTCGGGGCTCAATCTGTCCTGCATCTCTGCCAGTCGAGCCGTATCTTTT
TTTGACAGGAGACACCGCCTTCAATTTCAGGCAGACGGCACTTTGGTACC
ACCTGTAGACACGTCAGCTAAGGTTAGAACGCCTTTGTCTTCCATCGAGG
AGGCCCAGTGTGATTCAGGCACCAAAATCAACATGCAAAACGACGATCAT
GCAAAAGGAGGCTCGATATCCGAGACGAGCTCGTACTCTGACTCGGAAGT
CGATACGGCGAGCGACAGCGATCACCAGTCGGACTGTTCCAGTGTCACAG
ATGACGGGTACCTTAACGGGAATGAGGAGACGGGCACTATTCTTTGGCGG
CACGTGGAGTTCTATATTGTTCGTAACCCAGTGCCTGGACGTCGCCATAT
CTTAGCCGCGATTGTGTCCATCCTGCATACTAAAGGGGAAGGAAGGAAGT
TTCGGCTGTAAGTCATTGAGCCACGTGATGTGAGGTGGTGCCACGTACTT
ACCCAATCACTAGGAAGAGATATGTTATCGAGCACGAGGATAATTTGATA
TTCGATGTGTTATCACAGCTTCTGGCGCTGGCAATACATGATGATATCTT
CGAGGCTACTATTCAAGATGTGTCCCATATATACACAGTACCAATTCCTG
ATCATCGAAAGGGCATCCAGCTGAAGATAAAGAGAGAAAAGCTGGATGTA
TCGGTCTTCCGTGAGCCTGAACGTACCCCCCAGGGCTACAGGACATCTGA
TTCGTGCCCTCTGAAGTCCAAGACCTGGAGCCGATATGTCAAACGGATTG
GAGTGCGAAGTGGCCAGGAACGTAACCTTACACAGAAGATGTTCCGGCGC
GGTGCAATTAATGCCATCAATAGTAAGACCACCTTTGGTACTGCTTATTC
TTTATGGCTTATATGAACATCGACTTAGACAGCGCTCCATCCTCGATCCG
TGATCAAGTCGCGGATCGAGGATGGAGCGGATAACGAATCTAATGCCGTG
AAATACTACCTCAATGAGATAGTCGATTTTGACACAGCGGCAGCGTTTCA
CAAACGCCCATCGAACGAGGTCGTTCAACGTGAGCTGAGATCAGCGATCT
TGCTGGCAGATAAAACCGTAACTATTGGGTTGACGGCTACCCAGGCTAAG
AAAATCACTACAGACCCAGAGGTCTGTCGTCTTCGAAGAGTCTGTCGCGC
ATTGACTGCGGAAATTCGCAGCCAGGGCTATAAACGTGTGAAGGATGCCG
CAGACACCGAGATTGGTGAGCGGAAGAAACGTGCAGATGCCAAGCTCAAC
AGTACACTTACGAGGCTCCGAGAGGAGGAGAGGAGAGGAATCGCCGAAGG
CACTTCAGGAAGACAGACACGGCTATTTTCAACCAACAGTACGAGCTCGG
TCGGACCTCTCCTGAGGCTAAACTACAGCCTCATGTGGCCCGGACCTACC
AAATCCTCGAGCGCAAGGAGCTCGTTGATCTGCTCTGCTATTCAACTCCT
ACCAAAACAGACGAAGAAGCTCATCTTCGACGGTTAA back to topCoding sequence (CDS) from alignment at JC12F:167205..168991- >KJC3_000006-T1 ID=KJC3_000006-T1|Name=KJC3_000006-T1|organism=Aspergillus niger KJC3|type=CDS|length=4707bp|location=Sequence derived from alignment at JC12F:167205..168991- (Aspergillus niger KJC3) CGCTCCATCCTCGATCCGTGATCAAGTCGCGGATCGAGGATGGAGCGGAT AACGAATCTAATGCCGTGAAATACTACCTCAATGAGATAGTCGATTTTGA CACAGCGGCAGCGTTTCACAAACGCCCATCGAACGAGGTCGTTCAACGTG AGCTGAGATCAGCGATCTTGCTGGCAGATAAAACCGTAACTATTGGGTTG ACGGCTACCCAGGCTAAGAAAATCACTACAGACCCAGAGGTCTGTCGTCT TCGAAGAGTCTGTCGCGCATTGACTGCGGAAATTCGCAGCCAGGGCTATA AACGTGTGAAGGATGCCGCAGACACCGAGATTGGTGAGCGGAAGAAACGT GCAGATGCCAAGCTCAACAGTACACTTACGAGGCTCCGAGAGGAGGAGAG GAGAGGAATCGCCGAAGGCACTTCAGGAAGACAGACACGGCTATTTTCAA CCAACAGTACGAGCTCGGTCGGACCTCTCCTGAGGCTAAACTACAGCCTC ATGTGGCCCGGACCTACCAAATCCTCGAGCGCAAGGAGCTCGTTGATCTG CTCTGCTATTCAACTCCTACCAAAACAGACGAAGAAGCTCATCTTCGACG GTTAAGAAGAGATATGTTATCGAGCACGAGGATAATTTGATATTCGATGT GTTATCACAGCTTCTGGCGCTGGCAATACATGATGATATCTTCGAGGCTA CTATTCAAGATGTGTCCCATATATACACAGTACCAATTCCTGATCATCGA AAGGGCATCCAGCTGAAGATAAAGAGAGAAAAGCTGGATGTATCGGTCTT CCGTGAGCCTGAACGTACCCCCCAGGGCTACAGGACATCTGATTCGTGCC CTCTGAAGTCCAAGACCTGGAGCCGATATGTCAAACGGATTGGAGTGCGA AGTGGCCAGGAACGTAACCTTACACAGAAGATGTTCCGGCGCGGTGCAAT TAATGCCATCAATAATGAATATTGTCAGTTCGAGAATGGCTTTGCGTAAG CACCCACTGCCAAAGCCGACGGACCAGTCGGAGGATCTTTTGCAGTATCT TGTGTCCCATCTTGTGCATTGCGATTCGGTGTTCGCGGACGAAAAGCAGC GTCTCTACGCCCTCTCGGGGCTCAATCTGTCCTGCATCTCTGCCAGTCGA GCCGTATCTTTTTTTGACAGGAGACACCGCCTTCAATTTCAGGCAGACGG CACTTTGGTACCACCTGTAGACACGTCAGCTAAGGTTAGAACGCCTTTGT CTTCCATCGAGGAGGCCCAGTGTGATTCAGGCACCAAAATCAACATGCAA AACGACGATCATGCAAAAGGAGGCTCGATATCCGAGACGAGCTCGTACTC TGACTCGGAAGTCGATACGGCGAGCGACAGCGATCACCAGTCGGACTGTT CCAGTGTCACAGATGACGGGTACCTTAACGGGAATGAGGAGACGGGCACT ATTCTTTGGCGGCACGTGGAGTTCTATATTGTTCGTAACCCAGTGCCTGG ACGTCGCCATATCTTAGCCGCGATTGTGTCCATCCTGCATACTAAAGGGG AAGGAAGGAAGTTTCGGCTCGCTCCATCCTCGATCCGTGATCAAGTCGCG GATCGAGGATGGAGCGGATAACGAATCTAATGCCGTGAAATACTACCTCA ATGAGATAGTCGATTTTGACACAGCGGCAGCGTTTCACAAACGCCCATCG AACGAGGTCGTTCAACGTGAGCTGAGATCAGCGATCTTGCTGGCAGATAA AACCGTAACTATTGGGTTGACGGCTACCCAGGCTAAGAAAATCACTACAG ACCCAGAGGTCTGTCGTCTTCGAAGAGTCTGTCGCGCATTGACTGCGGAA ATTCGCAGCCAGGGCTATAAACGTGTGAAGGATGCCGCAGACACCGAGAT TGGTGAGCGGAAGAAACGTGCAGATGCCAAGCTCAACAGTACACTTACGA GGCTCCGAGAGGAGGAGAGGAGAGGAATCGCCGAAGGCACTTCAGGAAGA CAGACACGGCTATTTTCAACCAACAGTACGAGCTCGGTCGGACCTCTCCT GAGGCTAAACTACAGCCTCATGTGGCCCGGACCTACCAAATCCTCGAGCG CAAGGAGCTCGTTGATCTGCTCTGCTATTCAACTCCTACCAAAACAGACG AAGAAGCTCATCTTCGACGGTTAAGAAGAGATATGTTATCGAGCACGAGG ATAATTTGATATTCGATGTGTTATCACAGCTTCTGGCGCTGGCAATACAT GATGATATCTTCGAGGCTACTATTCAAGATGTGTCCCATATATACACAGT ACCAATTCCTGATCATCGAAAGGGCATCCAGCTGAAGATAAAGAGAGAAA AGCTGGATGTATCGGTCTTCCGTGAGCCTGAACGTACCCCCCAGGGCTAC AGGACATCTGATTCGTGCCCTCTGAAGTCCAAGACCTGGAGCCGATATGT CAAACGGATTGGAGTGCGAAGTGGCCAGGAACGTAACCTTACACAGAAGA TGTTCCGGCGCGGTGCAATTAATGCCATCAATAATGAATATTGTCAGTTC GAGAATGGCTTTGCGTAAGCACCCACTGCCAAAGCCGACGGACCAGTCGG AGGATCTTTTGCAGTATCTTGTGTCCCATCTTGTGCATTGCGATTCGGTG TTCGCGGACGAAAAGCAGCGTCTCTACGCCCTCTCGGGGCTCAATCTGTC CTGCATCTCTGCCAGTCGAGCCGTATCTTTTTTTGACAGGAGACACCGCC TTCAATTTCAGGCAGACGGCACTTTGGTACCACCTGTAGACACGTCAGCT AAGGTTAGAACGCCTTTGTCTTCCATCGAGGAGGCCCAGTGTGATTCAGG CACCAAAATCAACATGCAAAACGACGATCATGCAAAAGGAGGCTCGATAT CCGAGACGAGCTCGTACTCTGACTCGGAAGTCGATACGGCGAGCGACAGC GATCACCAGTCGGACTGTTCCAGTGTCACAGATGACGGGTACCTTAACGG GAATGAGGAGACGGGCACTATTCTTTGGCGGCACGTGGAGTTCTATATTG TTCGTAACCCAGTGCCTGGACGTCGCCATATCTTAGCCGCGATTGTGTCC ATCCTGCATACTAAAGGGGAAGGAAGGAAGTTTCGGCTCGCTCCATCCTC GATCCGTGATCAAGTCGCGGATCGAGGATGGAGCGGATAACGAATCTAAT GCCGTGAAATACTACCTCAATGAGATAGTCGATTTTGACACAGCGGCAGC GTTTCACAAACGCCCATCGAACGAGGTCGTTCAACGTGAGCTGAGATCAG CGATCTTGCTGGCAGATAAAACCGTAACTATTGGGTTGACGGCTACCCAG GCTAAGAAAATCACTACAGACCCAGAGGTCTGTCGTCTTCGAAGAGTCTG TCGCGCATTGACTGCGGAAATTCGCAGCCAGGGCTATAAACGTGTGAAGG ATGCCGCAGACACCGAGATTGGTGAGCGGAAGAAACGTGCAGATGCCAAG CTCAACAGTACACTTACGAGGCTCCGAGAGGAGGAGAGGAGAGGAATCGC CGAAGGCACTTCAGGAAGACAGACACGGCTATTTTCAACCAACAGTACGA GCTCGGTCGGACCTCTCCTGAGGCTAAACTACAGCCTCATGTGGCCCGGA CCTACCAAATCCTCGAGCGCAAGGAGCTCGTTGATCTGCTCTGCTATTCA ACTCCTACCAAAACAGACGAAGAAGCTCATCTTCGACGGTTAAGAAGAGA TATGTTATCGAGCACGAGGATAATTTGATATTCGATGTGTTATCACAGCT TCTGGCGCTGGCAATACATGATGATATCTTCGAGGCTACTATTCAAGATG TGTCCCATATATACACAGTACCAATTCCTGATCATCGAAAGGGCATCCAG CTGAAGATAAAGAGAGAAAAGCTGGATGTATCGGTCTTCCGTGAGCCTGA ACGTACCCCCCAGGGCTACAGGACATCTGATTCGTGCCCTCTGAAGTCCA AGACCTGGAGCCGATATGTCAAACGGATTGGAGTGCGAAGTGGCCAGGAA CGTAACCTTACACAGAAGATGTTCCGGCGCGGTGCAATTAATGCCATCAA TAATGAATATTGTCAGTTCGAGAATGGCTTTGCGTAAGCACCCACTGCCA AAGCCGACGGACCAGTCGGAGGATCTTTTGCAGTATCTTGTGTCCCATCT TGTGCATTGCGATTCGGTGTTCGCGGACGAAAAGCAGCGTCTCTACGCCC TCTCGGGGCTCAATCTGTCCTGCATCTCTGCCAGTCGAGCCGTATCTTTT TTTGACAGGAGACACCGCCTTCAATTTCAGGCAGACGGCACTTTGGTACC ACCTGTAGACACGTCAGCTAAGGTTAGAACGCCTTTGTCTTCCATCGAGG AGGCCCAGTGTGATTCAGGCACCAAAATCAACATGCAAAACGACGATCAT GCAAAAGGAGGCTCGATATCCGAGACGAGCTCGTACTCTGACTCGGAAGT CGATACGGCGAGCGACAGCGATCACCAGTCGGACTGTTCCAGTGTCACAG ATGACGGGTACCTTAACGGGAATGAGGAGACGGGCACTATTCTTTGGCGG CACGTGGAGTTCTATATTGTTCGTAACCCAGTGCCTGGACGTCGCCATAT CTTAGCCGCGATTGTGTCCATCCTGCATACTAAAGGGGAAGGAAGGAAGT TTCGGCT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_000006-T1.utr5p1 | KJC3_000006-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
Property Name | Value |
DBxref | InterPro:IPR021842 |
DBxref | PFAM:PF11917 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
JC12F | supercontig | JC12F:167205..168991 - |
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