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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC12F:167205..168991- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000006-T1 ID=KJC3_000006-T1|Name=KJC3_000006-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1787bp|location=Sequence derived from alignment at JC12F:167205..168991- (Aspergillus niger KJC3)
CGGGAGATGGATGCAGATATGAGGAGAGGTTGCCTCAACGTAGGTGATGG
TCTCCAAGTACCTATTCATGAGATCTATCTAATGGCAAGCCCTAGTACAT
AAATGAATATTGTCAGTTCGAGAATGGCTTTGCGTAAGCACCCACTGCCA
AAGCCGACGGACCAGTCGGAGGATCTTTTGCAGTATCTTGTGTCCCATCT
TGTGCATTGCGATTCGGTGTTCGCGGACGAAAAGCAGCGTCTCTACGCCC
TCTCGGGGCTCAATCTGTCCTGCATCTCTGCCAGTCGAGCCGTATCTTTT
TTTGACAGGAGACACCGCCTTCAATTTCAGGCAGACGGCACTTTGGTACC
ACCTGTAGACACGTCAGCTAAGGTTAGAACGCCTTTGTCTTCCATCGAGG
AGGCCCAGTGTGATTCAGGCACCAAAATCAACATGCAAAACGACGATCAT
GCAAAAGGAGGCTCGATATCCGAGACGAGCTCGTACTCTGACTCGGAAGT
CGATACGGCGAGCGACAGCGATCACCAGTCGGACTGTTCCAGTGTCACAG
ATGACGGGTACCTTAACGGGAATGAGGAGACGGGCACTATTCTTTGGCGG
CACGTGGAGTTCTATATTGTTCGTAACCCAGTGCCTGGACGTCGCCATAT
CTTAGCCGCGATTGTGTCCATCCTGCATACTAAAGGGGAAGGAAGGAAGT
TTCGGCTGTAAGTCATTGAGCCACGTGATGTGAGGTGGTGCCACGTACTT
ACCCAATCACTAGGAAGAGATATGTTATCGAGCACGAGGATAATTTGATA
TTCGATGTGTTATCACAGCTTCTGGCGCTGGCAATACATGATGATATCTT
CGAGGCTACTATTCAAGATGTGTCCCATATATACACAGTACCAATTCCTG
ATCATCGAAAGGGCATCCAGCTGAAGATAAAGAGAGAAAAGCTGGATGTA
TCGGTCTTCCGTGAGCCTGAACGTACCCCCCAGGGCTACAGGACATCTGA
TTCGTGCCCTCTGAAGTCCAAGACCTGGAGCCGATATGTCAAACGGATTG
GAGTGCGAAGTGGCCAGGAACGTAACCTTACACAGAAGATGTTCCGGCGC
GGTGCAATTAATGCCATCAATAGTAAGACCACCTTTGGTACTGCTTATTC
TTTATGGCTTATATGAACATCGACTTAGACAGCGCTCCATCCTCGATCCG
TGATCAAGTCGCGGATCGAGGATGGAGCGGATAACGAATCTAATGCCGTG
AAATACTACCTCAATGAGATAGTCGATTTTGACACAGCGGCAGCGTTTCA
CAAACGCCCATCGAACGAGGTCGTTCAACGTGAGCTGAGATCAGCGATCT
TGCTGGCAGATAAAACCGTAACTATTGGGTTGACGGCTACCCAGGCTAAG
AAAATCACTACAGACCCAGAGGTCTGTCGTCTTCGAAGAGTCTGTCGCGC
ATTGACTGCGGAAATTCGCAGCCAGGGCTATAAACGTGTGAAGGATGCCG
CAGACACCGAGATTGGTGAGCGGAAGAAACGTGCAGATGCCAAGCTCAAC
AGTACACTTACGAGGCTCCGAGAGGAGGAGAGGAGAGGAATCGCCGAAGG
CACTTCAGGAAGACAGACACGGCTATTTTCAACCAACAGTACGAGCTCGG
TCGGACCTCTCCTGAGGCTAAACTACAGCCTCATGTGGCCCGGACCTACC
AAATCCTCGAGCGCAAGGAGCTCGTTGATCTGCTCTGCTATTCAACTCCT
ACCAAAACAGACGAAGAAGCTCATCTTCGACGGTTAA back to topCoding sequence (CDS) from alignment at JC12F:167205..168991- >KJC3_000006-T1 ID=KJC3_000006-T1|Name=KJC3_000006-T1|organism=Aspergillus niger KJC3|type=CDS|length=4707bp|location=Sequence derived from alignment at JC12F:167205..168991- (Aspergillus niger KJC3)
CGCTCCATCCTCGATCCGTGATCAAGTCGCGGATCGAGGATGGAGCGGAT
AACGAATCTAATGCCGTGAAATACTACCTCAATGAGATAGTCGATTTTGA
CACAGCGGCAGCGTTTCACAAACGCCCATCGAACGAGGTCGTTCAACGTG
AGCTGAGATCAGCGATCTTGCTGGCAGATAAAACCGTAACTATTGGGTTG
ACGGCTACCCAGGCTAAGAAAATCACTACAGACCCAGAGGTCTGTCGTCT
TCGAAGAGTCTGTCGCGCATTGACTGCGGAAATTCGCAGCCAGGGCTATA
AACGTGTGAAGGATGCCGCAGACACCGAGATTGGTGAGCGGAAGAAACGT
GCAGATGCCAAGCTCAACAGTACACTTACGAGGCTCCGAGAGGAGGAGAG
GAGAGGAATCGCCGAAGGCACTTCAGGAAGACAGACACGGCTATTTTCAA
CCAACAGTACGAGCTCGGTCGGACCTCTCCTGAGGCTAAACTACAGCCTC
ATGTGGCCCGGACCTACCAAATCCTCGAGCGCAAGGAGCTCGTTGATCTG
CTCTGCTATTCAACTCCTACCAAAACAGACGAAGAAGCTCATCTTCGACG
GTTAAGAAGAGATATGTTATCGAGCACGAGGATAATTTGATATTCGATGT
GTTATCACAGCTTCTGGCGCTGGCAATACATGATGATATCTTCGAGGCTA
CTATTCAAGATGTGTCCCATATATACACAGTACCAATTCCTGATCATCGA
AAGGGCATCCAGCTGAAGATAAAGAGAGAAAAGCTGGATGTATCGGTCTT
CCGTGAGCCTGAACGTACCCCCCAGGGCTACAGGACATCTGATTCGTGCC
CTCTGAAGTCCAAGACCTGGAGCCGATATGTCAAACGGATTGGAGTGCGA
AGTGGCCAGGAACGTAACCTTACACAGAAGATGTTCCGGCGCGGTGCAAT
TAATGCCATCAATAATGAATATTGTCAGTTCGAGAATGGCTTTGCGTAAG
CACCCACTGCCAAAGCCGACGGACCAGTCGGAGGATCTTTTGCAGTATCT
TGTGTCCCATCTTGTGCATTGCGATTCGGTGTTCGCGGACGAAAAGCAGC
GTCTCTACGCCCTCTCGGGGCTCAATCTGTCCTGCATCTCTGCCAGTCGA
GCCGTATCTTTTTTTGACAGGAGACACCGCCTTCAATTTCAGGCAGACGG
CACTTTGGTACCACCTGTAGACACGTCAGCTAAGGTTAGAACGCCTTTGT
CTTCCATCGAGGAGGCCCAGTGTGATTCAGGCACCAAAATCAACATGCAA
AACGACGATCATGCAAAAGGAGGCTCGATATCCGAGACGAGCTCGTACTC
TGACTCGGAAGTCGATACGGCGAGCGACAGCGATCACCAGTCGGACTGTT
CCAGTGTCACAGATGACGGGTACCTTAACGGGAATGAGGAGACGGGCACT
ATTCTTTGGCGGCACGTGGAGTTCTATATTGTTCGTAACCCAGTGCCTGG
ACGTCGCCATATCTTAGCCGCGATTGTGTCCATCCTGCATACTAAAGGGG
AAGGAAGGAAGTTTCGGCTCGCTCCATCCTCGATCCGTGATCAAGTCGCG
GATCGAGGATGGAGCGGATAACGAATCTAATGCCGTGAAATACTACCTCA
ATGAGATAGTCGATTTTGACACAGCGGCAGCGTTTCACAAACGCCCATCG
AACGAGGTCGTTCAACGTGAGCTGAGATCAGCGATCTTGCTGGCAGATAA
AACCGTAACTATTGGGTTGACGGCTACCCAGGCTAAGAAAATCACTACAG
ACCCAGAGGTCTGTCGTCTTCGAAGAGTCTGTCGCGCATTGACTGCGGAA
ATTCGCAGCCAGGGCTATAAACGTGTGAAGGATGCCGCAGACACCGAGAT
TGGTGAGCGGAAGAAACGTGCAGATGCCAAGCTCAACAGTACACTTACGA
GGCTCCGAGAGGAGGAGAGGAGAGGAATCGCCGAAGGCACTTCAGGAAGA
CAGACACGGCTATTTTCAACCAACAGTACGAGCTCGGTCGGACCTCTCCT
GAGGCTAAACTACAGCCTCATGTGGCCCGGACCTACCAAATCCTCGAGCG
CAAGGAGCTCGTTGATCTGCTCTGCTATTCAACTCCTACCAAAACAGACG
AAGAAGCTCATCTTCGACGGTTAAGAAGAGATATGTTATCGAGCACGAGG
ATAATTTGATATTCGATGTGTTATCACAGCTTCTGGCGCTGGCAATACAT
GATGATATCTTCGAGGCTACTATTCAAGATGTGTCCCATATATACACAGT
ACCAATTCCTGATCATCGAAAGGGCATCCAGCTGAAGATAAAGAGAGAAA
AGCTGGATGTATCGGTCTTCCGTGAGCCTGAACGTACCCCCCAGGGCTAC
AGGACATCTGATTCGTGCCCTCTGAAGTCCAAGACCTGGAGCCGATATGT
CAAACGGATTGGAGTGCGAAGTGGCCAGGAACGTAACCTTACACAGAAGA
TGTTCCGGCGCGGTGCAATTAATGCCATCAATAATGAATATTGTCAGTTC
GAGAATGGCTTTGCGTAAGCACCCACTGCCAAAGCCGACGGACCAGTCGG
AGGATCTTTTGCAGTATCTTGTGTCCCATCTTGTGCATTGCGATTCGGTG
TTCGCGGACGAAAAGCAGCGTCTCTACGCCCTCTCGGGGCTCAATCTGTC
CTGCATCTCTGCCAGTCGAGCCGTATCTTTTTTTGACAGGAGACACCGCC
TTCAATTTCAGGCAGACGGCACTTTGGTACCACCTGTAGACACGTCAGCT
AAGGTTAGAACGCCTTTGTCTTCCATCGAGGAGGCCCAGTGTGATTCAGG
CACCAAAATCAACATGCAAAACGACGATCATGCAAAAGGAGGCTCGATAT
CCGAGACGAGCTCGTACTCTGACTCGGAAGTCGATACGGCGAGCGACAGC
GATCACCAGTCGGACTGTTCCAGTGTCACAGATGACGGGTACCTTAACGG
GAATGAGGAGACGGGCACTATTCTTTGGCGGCACGTGGAGTTCTATATTG
TTCGTAACCCAGTGCCTGGACGTCGCCATATCTTAGCCGCGATTGTGTCC
ATCCTGCATACTAAAGGGGAAGGAAGGAAGTTTCGGCTCGCTCCATCCTC
GATCCGTGATCAAGTCGCGGATCGAGGATGGAGCGGATAACGAATCTAAT
GCCGTGAAATACTACCTCAATGAGATAGTCGATTTTGACACAGCGGCAGC
GTTTCACAAACGCCCATCGAACGAGGTCGTTCAACGTGAGCTGAGATCAG
CGATCTTGCTGGCAGATAAAACCGTAACTATTGGGTTGACGGCTACCCAG
GCTAAGAAAATCACTACAGACCCAGAGGTCTGTCGTCTTCGAAGAGTCTG
TCGCGCATTGACTGCGGAAATTCGCAGCCAGGGCTATAAACGTGTGAAGG
ATGCCGCAGACACCGAGATTGGTGAGCGGAAGAAACGTGCAGATGCCAAG
CTCAACAGTACACTTACGAGGCTCCGAGAGGAGGAGAGGAGAGGAATCGC
CGAAGGCACTTCAGGAAGACAGACACGGCTATTTTCAACCAACAGTACGA
GCTCGGTCGGACCTCTCCTGAGGCTAAACTACAGCCTCATGTGGCCCGGA
CCTACCAAATCCTCGAGCGCAAGGAGCTCGTTGATCTGCTCTGCTATTCA
ACTCCTACCAAAACAGACGAAGAAGCTCATCTTCGACGGTTAAGAAGAGA
TATGTTATCGAGCACGAGGATAATTTGATATTCGATGTGTTATCACAGCT
TCTGGCGCTGGCAATACATGATGATATCTTCGAGGCTACTATTCAAGATG
TGTCCCATATATACACAGTACCAATTCCTGATCATCGAAAGGGCATCCAG
CTGAAGATAAAGAGAGAAAAGCTGGATGTATCGGTCTTCCGTGAGCCTGA
ACGTACCCCCCAGGGCTACAGGACATCTGATTCGTGCCCTCTGAAGTCCA
AGACCTGGAGCCGATATGTCAAACGGATTGGAGTGCGAAGTGGCCAGGAA
CGTAACCTTACACAGAAGATGTTCCGGCGCGGTGCAATTAATGCCATCAA
TAATGAATATTGTCAGTTCGAGAATGGCTTTGCGTAAGCACCCACTGCCA
AAGCCGACGGACCAGTCGGAGGATCTTTTGCAGTATCTTGTGTCCCATCT
TGTGCATTGCGATTCGGTGTTCGCGGACGAAAAGCAGCGTCTCTACGCCC
TCTCGGGGCTCAATCTGTCCTGCATCTCTGCCAGTCGAGCCGTATCTTTT
TTTGACAGGAGACACCGCCTTCAATTTCAGGCAGACGGCACTTTGGTACC
ACCTGTAGACACGTCAGCTAAGGTTAGAACGCCTTTGTCTTCCATCGAGG
AGGCCCAGTGTGATTCAGGCACCAAAATCAACATGCAAAACGACGATCAT
GCAAAAGGAGGCTCGATATCCGAGACGAGCTCGTACTCTGACTCGGAAGT
CGATACGGCGAGCGACAGCGATCACCAGTCGGACTGTTCCAGTGTCACAG
ATGACGGGTACCTTAACGGGAATGAGGAGACGGGCACTATTCTTTGGCGG
CACGTGGAGTTCTATATTGTTCGTAACCCAGTGCCTGGACGTCGCCATAT
CTTAGCCGCGATTGTGTCCATCCTGCATACTAAAGGGGAAGGAAGGAAGT
TTCGGCT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000006-T1.utr5p1 | KJC3_000006-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021842 |
| DBxref | PFAM:PF11917 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| JC12F | supercontig | JC12F:167205..168991 - |
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