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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC12F:187007..187739+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000010-T1 ID=KJC3_000010-T1|Name=KJC3_000010-T1|organism=Aspergillus niger KJC3|type=mRNA|length=733bp|location=Sequence derived from alignment at JC12F:187007..187739+ (Aspergillus niger KJC3)
TGGAAAAGGACACATTCACGCTGGTCCGAGACGCACCTAGGAGACGCAGT
CTTTGATGATTTTATTTAGGTCTTGACTGTCCTTCCCGGTCCGTACATTG
GTGGCCATGACGGAAAATGTCCGACTTCGACAATTGCGCCCGGCAACTGA
GGCCCCATATACCGAACCGATTCATCGCGGATTAACTCCAAATCGGCGAA
ATACTGCATGCACAATGTGTCGCAGAAAGAGAAGGAAGGTTTGTTTGTCT
CACATAACTTAGCTCAGAATTGGCTAAAGACCGACAGTGTACTGGGACAC
CAATTTGTCTATCTTGCATGTCCTCGAGGTCAGAGTGTATCTTCGAACCG
CACAAAGACAAGCGTAGGAAGGCGGCATTGCGCCATGCCGAAAAAAATGG
ACAAAAACTTGCGATTCTTCTTCAGCGTCTCCTTACATTCCTCAAGATCG
AAAAGGACGAGACAGTTCTCCAATGGAAAAGAAGCTTAAATGATATCCTG
TCGCCTGACATGATGATTGCAAAGCTAGAAAGAGACATTGAGCTAGGTCT
GGGTTCGAGTCGGTAGGGATCGTACCATGTGGCTGATAGCTAGTGGTTTT
GTATCTACTGAACCTGTCGTGAGTTATGCGGGATATCGATAATGTTTTGT
AAGGCCAAAATCTTTCGCTTCGGCATGAATTGCCAGATAATAGTAGTTTC
CAATAGTTGCACCCAGTACATAGTTGGTGGGGG back to topCoding sequence (CDS) from alignment at JC12F:187007..187739+ >KJC3_000010-T1 ID=KJC3_000010-T1|Name=KJC3_000010-T1|organism=Aspergillus niger KJC3|type=CDS|length=822bp|location=Sequence derived from alignment at JC12F:187007..187739+ (Aspergillus niger KJC3)
ATGACGGAAAATGTCCGACTTCGACAATTGCGCCCGGCAACTGAGGCCCC
ATATACCGAACCGATTCATCGCGGATTAACTCCAAATCGGCGAAATACTG
CATGCACAATGTGTCGCAGAAAGAGAAGGAAGTGTACTGGGACACCAATT
TGTCTATCTTGCATGTCCTCGAGGTCAGAGTGTATCTTCGAACCGCACAA
AGACAAGCGTAGGAAGGCGGCATTGCGCCATGCCGAAAAAAATGGACAAA
AACTTGCGATTCTTCTTCAGCGTCTCCTTACATTCCTCAAGATCGAAAAG
GACGAGACAGTTCTCCAATGGAAAAGAAGCTTAAATGATATCCTGTCGCC
TGACATGATGATTGCAAAGCTAGAAAGAGACATTGAGCTAGGTCTGGGTT
CGAGTCGGTAGATGACGGAAAATGTCCGACTTCGACAATTGCGCCCGGCA
ACTGAGGCCCCATATACCGAACCGATTCATCGCGGATTAACTCCAAATCG
GCGAAATACTGCATGCACAATGTGTCGCAGAAAGAGAAGGAAGTGTACTG
GGACACCAATTTGTCTATCTTGCATGTCCTCGAGGTCAGAGTGTATCTTC
GAACCGCACAAAGACAAGCGTAGGAAGGCGGCATTGCGCCATGCCGAAAA
AAATGGACAAAAACTTGCGATTCTTCTTCAGCGTCTCCTTACATTCCTCA
AGATCGAAAAGGACGAGACAGTTCTCCAATGGAAAAGAAGCTTAAATGAT
ATCCTGTCGCCTGACATGATGATTGCAAAGCTAGAAAGAGACATTGAGCT
AGGTCTGGGTTCGAGTCGGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000010-T1.utr5p1 | KJC3_000010-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000010-T1.utr3p1 | KJC3_000010-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| JC12F | supercontig | JC12F:187007..187739 + |
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