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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC12F:216751..218168+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000016-T1 ID=KJC3_000016-T1|Name=KJC3_000016-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1418bp|location=Sequence derived from alignment at JC12F:216751..218168+ (Aspergillus niger KJC3) AAAGAACGCTCAAAGCATACCGCACTTCAAATTACTACTTTTCCCTACAA
ATATTTACGGACCCTTGTAAGGTAGCGATTCCCTTCGTGTTTCATATCAC
CTACTCATCTCGTTCATCTCATCCGCTAAGGGAACACAACATCAGGCTGA
TCGAACAAAGGAGCAGTATATCAATCCACTGGTGCCATCGATAATCTCTG
CTAGAACACTCATAGCCCTTTCCTTTTCCACAAGACCTCAAAATATCATC
CGCTCCCATCTGTGCCACAAATACACCATCTAGTCTGAACTCTAAGAGAT
ATGGCTGCTTCGCGGGCAGAAGGCCTAAGGCTTCTTGCTCCAGCCCCAAC
TATAGAAGCTCCCCAACAGACAGATATCCGTATTAAGTCAAGCAAGAGAA
AATCAATAGCCTGTGAGGCCTGTAAGAAAAAGAGGTCTAAGGTCAGCACG
CAGAATGTTATTTCAGATAGCATATAGCTGATTGATAGGGGCCTACCAGT
GCAATGGAGATCATCCATGCGATGGATGTGTTCAGGCAGGTACAGAATGT
CAGGTACTTGAAGGCCTTGACCGACGAAGGAAAGTTGCAATGCACAAGAT
AGAGCGGGACTTGTATACAACTCGTTCGCTTCTACATGAGATCGTGGTGG
CTTTCGATGGTGGTACTGATGCAGATGTTGAACGGCTCATCAGCATAGCA
AGGAATGATTCGTCTACTGATGTGAACACGAAGTTGCACGATTGGCATAG
TCTCCAGGTGGGAAATCATTCTCTCATTGAACGAAATATTTGAATGCTGT
GCTGAGTCATATGTTTAGGACATGCGATTGCAAGTGAACTTCTATGAGCG
ATTGGTCCAGAATGTATCGGATAAATTCGGCAAGGATGTCTCTACTTACC
TTGCAGATTCGTTGAAGGTAAAAGTCATCCTACTTCGATTGATAGCCTAC
TAACTGTGCTGCACTAGTCTTTCCCATCGCGATCAACGCCTCCAGCATAG
CCGACTAAACCTCGCTAGATGATCTTCGTCAGTGATTCCAAGAAGGCGTT
GACCCCAGGTGCGAATATGAGATGAATTGTCGAAACAGGTCTATTCGCCG
GGATAACTATTTAAAACTGCTTAGCTGGAAAAGCTGGTGGATAGTCCTGT
CATTCAAATGTGCTACTTATTGAGCGGCACAACAGGTCTGGCATTGATGC
ATTACATTACTGAGCTACTATTTAAATCGACCAGTGCTTGTACCTCGACG
TACAAACGTGTTTTAAGCGCACCGTCATCTACAAAGGGGAAAACGAGACG
ACCGAACTTCACCCAACAGTAACGTATAAGATTTTTCTCTCTAGGCAAGA
CTATCTATTTTCTTATTGATTCTTATATGCACAGACGATAAGTTCGAATA
TGTACTTTTACCAAACGC back to topCoding sequence (CDS) from alignment at JC12F:216751..218168+ >KJC3_000016-T1 ID=KJC3_000016-T1|Name=KJC3_000016-T1|organism=Aspergillus niger KJC3|type=CDS|length=2124bp|location=Sequence derived from alignment at JC12F:216751..218168+ (Aspergillus niger KJC3) ATGGCTGCTTCGCGGGCAGAAGGCCTAAGGCTTCTTGCTCCAGCCCCAAC TATAGAAGCTCCCCAACAGACAGATATCCGTATTAAGTCAAGCAAGAGAA AATCAATAGCCTGTGAGGCCTGTAAGAAAAAGAGGTCTAAGTGCAATGGA GATCATCCATGCGATGGATGTGTTCAGGCAGGTACAGAATGTCAGGTACT TGAAGGCCTTGACCGACGAAGGAAAGTTGCAATGCACAAGATAGAGCGGG ACTTGTATACAACTCGTTCGCTTCTACATGAGATCGTGGTGGCTTTCGAT GGTGGTACTGATGCAGATGTTGAACGGCTCATCAGCATAGCAAGGAATGA TTCGTCTACTGATGTGAACACGAAGTTGCACGATTGGCATAGTCTCCAGG ACATGCGATTGCAAGTGAACTTCTATGAGCGATTGGTCCAGAATGTATCG GATAAATTCGGCAAGGATGTCTCTACTTACCTTGCAGATTCGTTGAAGTC TTTCCCATCGCGATCAACGCCTCCAGCATAGATGGCTGCTTCGCGGGCAG AAGGCCTAAGGCTTCTTGCTCCAGCCCCAACTATAGAAGCTCCCCAACAG ACAGATATCCGTATTAAGTCAAGCAAGAGAAAATCAATAGCCTGTGAGGC CTGTAAGAAAAAGAGGTCTAAGTGCAATGGAGATCATCCATGCGATGGAT GTGTTCAGGCAGGTACAGAATGTCAGGTACTTGAAGGCCTTGACCGACGA AGGAAAGTTGCAATGCACAAGATAGAGCGGGACTTGTATACAACTCGTTC GCTTCTACATGAGATCGTGGTGGCTTTCGATGGTGGTACTGATGCAGATG TTGAACGGCTCATCAGCATAGCAAGGAATGATTCGTCTACTGATGTGAAC ACGAAGTTGCACGATTGGCATAGTCTCCAGGACATGCGATTGCAAGTGAA CTTCTATGAGCGATTGGTCCAGAATGTATCGGATAAATTCGGCAAGGATG TCTCTACTTACCTTGCAGATTCGTTGAAGTCTTTCCCATCGCGATCAACG CCTCCAGCATAGATGGCTGCTTCGCGGGCAGAAGGCCTAAGGCTTCTTGC TCCAGCCCCAACTATAGAAGCTCCCCAACAGACAGATATCCGTATTAAGT CAAGCAAGAGAAAATCAATAGCCTGTGAGGCCTGTAAGAAAAAGAGGTCT AAGTGCAATGGAGATCATCCATGCGATGGATGTGTTCAGGCAGGTACAGA ATGTCAGGTACTTGAAGGCCTTGACCGACGAAGGAAAGTTGCAATGCACA AGATAGAGCGGGACTTGTATACAACTCGTTCGCTTCTACATGAGATCGTG GTGGCTTTCGATGGTGGTACTGATGCAGATGTTGAACGGCTCATCAGCAT AGCAAGGAATGATTCGTCTACTGATGTGAACACGAAGTTGCACGATTGGC ATAGTCTCCAGGACATGCGATTGCAAGTGAACTTCTATGAGCGATTGGTC CAGAATGTATCGGATAAATTCGGCAAGGATGTCTCTACTTACCTTGCAGA TTCGTTGAAGTCTTTCCCATCGCGATCAACGCCTCCAGCATAGATGGCTG CTTCGCGGGCAGAAGGCCTAAGGCTTCTTGCTCCAGCCCCAACTATAGAA GCTCCCCAACAGACAGATATCCGTATTAAGTCAAGCAAGAGAAAATCAAT AGCCTGTGAGGCCTGTAAGAAAAAGAGGTCTAAGTGCAATGGAGATCATC CATGCGATGGATGTGTTCAGGCAGGTACAGAATGTCAGGTACTTGAAGGC CTTGACCGACGAAGGAAAGTTGCAATGCACAAGATAGAGCGGGACTTGTA TACAACTCGTTCGCTTCTACATGAGATCGTGGTGGCTTTCGATGGTGGTA CTGATGCAGATGTTGAACGGCTCATCAGCATAGCAAGGAATGATTCGTCT ACTGATGTGAACACGAAGTTGCACGATTGGCATAGTCTCCAGGACATGCG ATTGCAAGTGAACTTCTATGAGCGATTGGTCCAGAATGTATCGGATAAAT TCGGCAAGGATGTCTCTACTTACCTTGCAGATTCGTTGAAGTCTTTCCCA TCGCGATCAACGCCTCCAGCATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
Term | Definition |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_000016-T1.utr3p1 | KJC3_000016-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
Property Name | Value |
DBxref | InterPro:IPR036864 |
DBxref | InterPro:IPR001138 |
DBxref | PFAM:PF00172 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
JC12F | supercontig | JC12F:216751..218168 + |
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