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KJC3_000016-T1, KJC3_000016-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000016-T1
Unique NameKJC3_000016-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at JC12F:216751..218168+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000016-T1 ID=KJC3_000016-T1|Name=KJC3_000016-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1418bp|location=Sequence derived from alignment at JC12F:216751..218168+ (Aspergillus niger KJC3)
AAAGAACGCTCAAAGCATACCGCACTTCAAATTACTACTTTTCCCTACAA
ATATTTACGGACCCTTGTAAGGTAGCGATTCCCTTCGTGTTTCATATCAC
CTACTCATCTCGTTCATCTCATCCGCTAAGGGAACACAACATCAGGCTGA
TCGAACAAAGGAGCAGTATATCAATCCACTGGTGCCATCGATAATCTCTG
CTAGAACACTCATAGCCCTTTCCTTTTCCACAAGACCTCAAAATATCATC
CGCTCCCATCTGTGCCACAAATACACCATCTAGTCTGAACTCTAAGAGAT
ATGGCTGCTTCGCGGGCAGAAGGCCTAAGGCTTCTTGCTCCAGCCCCAAC
TATAGAAGCTCCCCAACAGACAGATATCCGTATTAAGTCAAGCAAGAGAA
AATCAATAGCCTGTGAGGCCTGTAAGAAAAAGAGGTCTAAGGTCAGCACG
CAGAATGTTATTTCAGATAGCATATAGCTGATTGATAGGGGCCTACCAGT
GCAATGGAGATCATCCATGCGATGGATGTGTTCAGGCAGGTACAGAATGT
CAGGTACTTGAAGGCCTTGACCGACGAAGGAAAGTTGCAATGCACAAGAT
AGAGCGGGACTTGTATACAACTCGTTCGCTTCTACATGAGATCGTGGTGG
CTTTCGATGGTGGTACTGATGCAGATGTTGAACGGCTCATCAGCATAGCA
AGGAATGATTCGTCTACTGATGTGAACACGAAGTTGCACGATTGGCATAG
TCTCCAGGTGGGAAATCATTCTCTCATTGAACGAAATATTTGAATGCTGT
GCTGAGTCATATGTTTAGGACATGCGATTGCAAGTGAACTTCTATGAGCG
ATTGGTCCAGAATGTATCGGATAAATTCGGCAAGGATGTCTCTACTTACC
TTGCAGATTCGTTGAAGGTAAAAGTCATCCTACTTCGATTGATAGCCTAC
TAACTGTGCTGCACTAGTCTTTCCCATCGCGATCAACGCCTCCAGCATAG
CCGACTAAACCTCGCTAGATGATCTTCGTCAGTGATTCCAAGAAGGCGTT
GACCCCAGGTGCGAATATGAGATGAATTGTCGAAACAGGTCTATTCGCCG
GGATAACTATTTAAAACTGCTTAGCTGGAAAAGCTGGTGGATAGTCCTGT
CATTCAAATGTGCTACTTATTGAGCGGCACAACAGGTCTGGCATTGATGC
ATTACATTACTGAGCTACTATTTAAATCGACCAGTGCTTGTACCTCGACG
TACAAACGTGTTTTAAGCGCACCGTCATCTACAAAGGGGAAAACGAGACG
ACCGAACTTCACCCAACAGTAACGTATAAGATTTTTCTCTCTAGGCAAGA
CTATCTATTTTCTTATTGATTCTTATATGCACAGACGATAAGTTCGAATA
TGTACTTTTACCAAACGC
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Coding sequence (CDS) from alignment at JC12F:216751..218168+

>KJC3_000016-T1 ID=KJC3_000016-T1|Name=KJC3_000016-T1|organism=Aspergillus niger KJC3|type=CDS|length=2124bp|location=Sequence derived from alignment at JC12F:216751..218168+ (Aspergillus niger KJC3)
ATGGCTGCTTCGCGGGCAGAAGGCCTAAGGCTTCTTGCTCCAGCCCCAAC
TATAGAAGCTCCCCAACAGACAGATATCCGTATTAAGTCAAGCAAGAGAA
AATCAATAGCCTGTGAGGCCTGTAAGAAAAAGAGGTCTAAGTGCAATGGA
GATCATCCATGCGATGGATGTGTTCAGGCAGGTACAGAATGTCAGGTACT
TGAAGGCCTTGACCGACGAAGGAAAGTTGCAATGCACAAGATAGAGCGGG
ACTTGTATACAACTCGTTCGCTTCTACATGAGATCGTGGTGGCTTTCGAT
GGTGGTACTGATGCAGATGTTGAACGGCTCATCAGCATAGCAAGGAATGA
TTCGTCTACTGATGTGAACACGAAGTTGCACGATTGGCATAGTCTCCAGG
ACATGCGATTGCAAGTGAACTTCTATGAGCGATTGGTCCAGAATGTATCG
GATAAATTCGGCAAGGATGTCTCTACTTACCTTGCAGATTCGTTGAAGTC
TTTCCCATCGCGATCAACGCCTCCAGCATAGATGGCTGCTTCGCGGGCAG
AAGGCCTAAGGCTTCTTGCTCCAGCCCCAACTATAGAAGCTCCCCAACAG
ACAGATATCCGTATTAAGTCAAGCAAGAGAAAATCAATAGCCTGTGAGGC
CTGTAAGAAAAAGAGGTCTAAGTGCAATGGAGATCATCCATGCGATGGAT
GTGTTCAGGCAGGTACAGAATGTCAGGTACTTGAAGGCCTTGACCGACGA
AGGAAAGTTGCAATGCACAAGATAGAGCGGGACTTGTATACAACTCGTTC
GCTTCTACATGAGATCGTGGTGGCTTTCGATGGTGGTACTGATGCAGATG
TTGAACGGCTCATCAGCATAGCAAGGAATGATTCGTCTACTGATGTGAAC
ACGAAGTTGCACGATTGGCATAGTCTCCAGGACATGCGATTGCAAGTGAA
CTTCTATGAGCGATTGGTCCAGAATGTATCGGATAAATTCGGCAAGGATG
TCTCTACTTACCTTGCAGATTCGTTGAAGTCTTTCCCATCGCGATCAACG
CCTCCAGCATAGATGGCTGCTTCGCGGGCAGAAGGCCTAAGGCTTCTTGC
TCCAGCCCCAACTATAGAAGCTCCCCAACAGACAGATATCCGTATTAAGT
CAAGCAAGAGAAAATCAATAGCCTGTGAGGCCTGTAAGAAAAAGAGGTCT
AAGTGCAATGGAGATCATCCATGCGATGGATGTGTTCAGGCAGGTACAGA
ATGTCAGGTACTTGAAGGCCTTGACCGACGAAGGAAAGTTGCAATGCACA
AGATAGAGCGGGACTTGTATACAACTCGTTCGCTTCTACATGAGATCGTG
GTGGCTTTCGATGGTGGTACTGATGCAGATGTTGAACGGCTCATCAGCAT
AGCAAGGAATGATTCGTCTACTGATGTGAACACGAAGTTGCACGATTGGC
ATAGTCTCCAGGACATGCGATTGCAAGTGAACTTCTATGAGCGATTGGTC
CAGAATGTATCGGATAAATTCGGCAAGGATGTCTCTACTTACCTTGCAGA
TTCGTTGAAGTCTTTCCCATCGCGATCAACGCCTCCAGCATAGATGGCTG
CTTCGCGGGCAGAAGGCCTAAGGCTTCTTGCTCCAGCCCCAACTATAGAA
GCTCCCCAACAGACAGATATCCGTATTAAGTCAAGCAAGAGAAAATCAAT
AGCCTGTGAGGCCTGTAAGAAAAAGAGGTCTAAGTGCAATGGAGATCATC
CATGCGATGGATGTGTTCAGGCAGGTACAGAATGTCAGGTACTTGAAGGC
CTTGACCGACGAAGGAAAGTTGCAATGCACAAGATAGAGCGGGACTTGTA
TACAACTCGTTCGCTTCTACATGAGATCGTGGTGGCTTTCGATGGTGGTA
CTGATGCAGATGTTGAACGGCTCATCAGCATAGCAAGGAATGATTCGTCT
ACTGATGTGAACACGAAGTTGCACGATTGGCATAGTCTCCAGGACATGCG
ATTGCAAGTGAACTTCTATGAGCGATTGGTCCAGAATGTATCGGATAAAT
TCGGCAAGGATGTCTCTACTTACCTTGCAGATTCGTTGAAGTCTTTCCCA
TCGCGATCAACGCCTCCAGCATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000016KJC3_000016Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000016-T1KJC3_000016-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000016-T1.utr5p1KJC3_000016-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_000016-T1.utr5p2KJC3_000016-T1.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000016-T1.exon1KJC3_000016-T1.exon1Aspergillus niger KJC3exon
KJC3_000016-T1.exon2KJC3_000016-T1.exon2Aspergillus niger KJC3exon
KJC3_000016-T1.exon3KJC3_000016-T1.exon3Aspergillus niger KJC3exon
KJC3_000016-T1.exon4KJC3_000016-T1.exon4Aspergillus niger KJC3exon
KJC3_000016-T1.exon5KJC3_000016-T1.exon5Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000016-T1.cdsKJC3_000016-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000016-T1.utr3p1KJC3_000016-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR001138
DBxrefPFAM:PF00172
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JC12FsupercontigJC12F:216751..218168 +
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