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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC12F:270833..272640- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000024-T1 ID=KJC3_000024-T1|Name=KJC3_000024-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1808bp|location=Sequence derived from alignment at JC12F:270833..272640- (Aspergillus niger KJC3)
ATCAGGATGTCTGCGAAGCTACCTCTTATCAACCCCTACAATTCAATCTC
AGAAGGACTAGTCTCCGAACTCAAAGCTGCGCTTTATCGGTTTGGAGCTT
TCCGGTTAGCAGCCCCTGAAACCACACAAAGTCGTCGCGACGCTGTTATC
GAAAATGCAGGCTAAGCTCACATTCCAACAATAGTATTCGTCTCTGACCG
CCTCTTTTAGGCTCGGGATTTTTTTAGACAGCCAGTGGCAGCTAAGGCAG
GCATAACGGGATACTCTCCCTTTGCGTCGGAGCGTGTTCGCGGCCGGACC
GAGATACCCAAAGAAAGTATCTATTTTTTCCGAAATGGTGCCGAGTCAAA
GTATCCCAAGGGGCCATCTTCCAACCTGTATCGCTCCGTCAAATGTCTTC
ATGAGGTAGTACTAGCCACTCCTGCAAACGTGCATTGTGCTGACTTACCC
TTTCCTTCAAGGAGTGGACGCCTATAAGGCTGCATTTGTTGAAGACTATG
TCGCAAGCACTGGATGCGGACGTTCACCTTACGGGTACTACACTTCTCGA
TTCTGTTACCATCGGAGTCCACTACTATGATTCTCAAAGCCTTCCTGACC
ACAGCGCTTATTTCAGCCCCCCTCATATGGATAGCGGGACATTGACAGTT
CTATTCCGGTCTTATGATGAGACCGACGGCCTAGAAATTGCTGATCTTGA
AACGACGAAGAAACAAGACAGTGAGGGGGTCGGATCGGAGGCGTCTTTTA
TTCCAGTTCCTACGTTGGGGGATGGAATGCCCGAGGTCGTTGTCTTTGCA
GGCACTAGACTCCAGCGTTTGCTTGGGCGTGACCGAGTCCGGGCTTGCGT
GCACAGAGTTCGTGGTCCCGGCCCGGGAGGCCACAGTAGCTCTGGCGTAC
GACGATTGAGTATCGCAATGTTCTGCGCTCCCTCTGTGCCATCTGTCCCA
CCGCTTTTGTCGTCCTCTTGACCAAGTGGACATTTGTGGGCCCGGCTCTC
TATTTTGTCCTTTATTCAGCTAAAGCAAGATCCATGTTATTATCATGACA
AATGCTACCACCACTGCATACCACAAGAATATAAGAATAATAATCTTCAA
ATCACCCCGGCAGCTGGTCTCTGCGCTTCGCTTCCTTCAATTTCCTCCGG
CCAATAATATCTAGAGATCGCAGCTGATTTTGGTAATCGTTAAGGATGTG
GCAAGCATGGTCGCTGCTGTTGGTCCCGGGCTCCTCTTGTTGAGGCTCGA
GCTCTCGACGGGCAGCAGCTGATACTTCCTCCCAGCAAGGCCGACAAGTC
TCTATCTTTTGAGTGCCTGTTCTGACTGCAGAATGCAGGGCGAATCTTCT
AGAATGTTAGCCGTGTCTCACCAGTCACTGATGGAACACTAACAGATATC
TCGGCGCTCTTAGGGAACTACTCTCATGTTAAAGTGGATATAATATCCGA
GCAAGGGTCATATACTTACTGGACAATCCAGGTACGACCGATCTTGGGGC
TCTTCAGGATCGCCTGCAATACACAGGAATTTTGCAGTACCGGCTCCAGC
TCTCCTTCCGGGAAACGTTTCAGCTTGCCATCCGAAATATACACAATAAT
CATCTGCCCTTCTTTCGCGTGTTCAAGTGGAATAAGACCTTCGGACGTAG
GAACACACATCTCCCAGCTATCGGTTACAAGTACCCACTCAATCAAGAAT
GTACCACTGATGTCGGCGTCATGGAGTATTTGTTTTGTGTTCACTGCCAG
ACAGGAGACAGTTTCCTCTGTAGTGCAGATTGACATAGCTCATCGGATAT
TGGCAGCG back to topCoding sequence (CDS) from alignment at JC12F:270833..272640- >KJC3_000024-T1 ID=KJC3_000024-T1|Name=KJC3_000024-T1|organism=Aspergillus niger KJC3|type=CDS|length=2565bp|location=Sequence derived from alignment at JC12F:270833..272640- (Aspergillus niger KJC3)
GAGTGGACGCCTATAAGGCTGCATTTGTTGAAGACTATGTCGCAAGCACT
GGATGCGGACGTTCACCTTACGGGTACTACACTTCTCGATTCTGTTACCA
TCGGAGTCCACTACTATGATTCTCAAAGCCTTCCTGACCACAGCGCTTAT
TTCAGCCCCCCTCATATGGATAGCGGGACATTGACAGTTCTATTCCGGTC
TTATGATGAGACCGACGGCCTAGAAATTGCTGATCTTGAAACGACGAAGA
AACAAGACAGTGAGGGGGTCGGATCGGAGGCGTCTTTTATTCCAGTTCCT
ACGTTGGGGGATGGAATGCCCGAGGTCGTTGTCTTTGCAGGCACTAGACT
CCAGCGTTTGCTTGGGCGTGACCGAGTCCGGGCTTGCGTGCACAGAGTTC
GTGGTCCCGGCCCGGGAGGCCACAGTAGCTCTGGCGTACGACGATTGAGT
ATCGCAATGTTCTGCGCTCCCTCTGTGCCATCTGTCCCACCGCTTTTGTC
GTCCTCTTGAGCTCGGGATTTTTTTAGACAGCCAGTGGCAGCTAAGGCAG
GCATAACGGGATACTCTCCCTTTGCGTCGGAGCGTGTTCGCGGCCGGACC
GAGATACCCAAAGAAAGTATCTATTTTTTCCGAAATGGTGCCGAGTCAAA
GTATCCCAAGGGGCCATCTTCCAACCTGTATCGCTCCGTCAAATGTCTTC
ATGAGATGTCTGCGAAGCTACCTCTTATCAACCCCTACAATTCAATCTCA
GAAGGACTAGTCTCCGAACTCAAAGCTGCGCTTTATCGGTTTGGAGCTTT
CCGGTTAGCAGCCCCTGAAACCACACAAAGTCGTCGCGACGCTGTTATCG
AAAATGAGTGGACGCCTATAAGGCTGCATTTGTTGAAGACTATGTCGCAA
GCACTGGATGCGGACGTTCACCTTACGGGTACTACACTTCTCGATTCTGT
TACCATCGGAGTCCACTACTATGATTCTCAAAGCCTTCCTGACCACAGCG
CTTATTTCAGCCCCCCTCATATGGATAGCGGGACATTGACAGTTCTATTC
CGGTCTTATGATGAGACCGACGGCCTAGAAATTGCTGATCTTGAAACGAC
GAAGAAACAAGACAGTGAGGGGGTCGGATCGGAGGCGTCTTTTATTCCAG
TTCCTACGTTGGGGGATGGAATGCCCGAGGTCGTTGTCTTTGCAGGCACT
AGACTCCAGCGTTTGCTTGGGCGTGACCGAGTCCGGGCTTGCGTGCACAG
AGTTCGTGGTCCCGGCCCGGGAGGCCACAGTAGCTCTGGCGTACGACGAT
TGAGTATCGCAATGTTCTGCGCTCCCTCTGTGCCATCTGTCCCACCGCTT
TTGTCGTCCTCTTGAGCTCGGGATTTTTTTAGACAGCCAGTGGCAGCTAA
GGCAGGCATAACGGGATACTCTCCCTTTGCGTCGGAGCGTGTTCGCGGCC
GGACCGAGATACCCAAAGAAAGTATCTATTTTTTCCGAAATGGTGCCGAG
TCAAAGTATCCCAAGGGGCCATCTTCCAACCTGTATCGCTCCGTCAAATG
TCTTCATGAGATGTCTGCGAAGCTACCTCTTATCAACCCCTACAATTCAA
TCTCAGAAGGACTAGTCTCCGAACTCAAAGCTGCGCTTTATCGGTTTGGA
GCTTTCCGGTTAGCAGCCCCTGAAACCACACAAAGTCGTCGCGACGCTGT
TATCGAAAATGAGTGGACGCCTATAAGGCTGCATTTGTTGAAGACTATGT
CGCAAGCACTGGATGCGGACGTTCACCTTACGGGTACTACACTTCTCGAT
TCTGTTACCATCGGAGTCCACTACTATGATTCTCAAAGCCTTCCTGACCA
CAGCGCTTATTTCAGCCCCCCTCATATGGATAGCGGGACATTGACAGTTC
TATTCCGGTCTTATGATGAGACCGACGGCCTAGAAATTGCTGATCTTGAA
ACGACGAAGAAACAAGACAGTGAGGGGGTCGGATCGGAGGCGTCTTTTAT
TCCAGTTCCTACGTTGGGGGATGGAATGCCCGAGGTCGTTGTCTTTGCAG
GCACTAGACTCCAGCGTTTGCTTGGGCGTGACCGAGTCCGGGCTTGCGTG
CACAGAGTTCGTGGTCCCGGCCCGGGAGGCCACAGTAGCTCTGGCGTACG
ACGATTGAGTATCGCAATGTTCTGCGCTCCCTCTGTGCCATCTGTCCCAC
CGCTTTTGTCGTCCTCTTGAGCTCGGGATTTTTTTAGACAGCCAGTGGCA
GCTAAGGCAGGCATAACGGGATACTCTCCCTTTGCGTCGGAGCGTGTTCG
CGGCCGGACCGAGATACCCAAAGAAAGTATCTATTTTTTCCGAAATGGTG
CCGAGTCAAAGTATCCCAAGGGGCCATCTTCCAACCTGTATCGCTCCGTC
AAATGTCTTCATGAGATGTCTGCGAAGCTACCTCTTATCAACCCCTACAA
TTCAATCTCAGAAGGACTAGTCTCCGAACTCAAAGCTGCGCTTTATCGGT
TTGGAGCTTTCCGGTTAGCAGCCCCTGAAACCACACAAAGTCGTCGCGAC
GCTGTTATCGAAAAT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000024-T1.utr5p1 | KJC3_000024-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027443 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| JC12F | supercontig | JC12F:270833..272640 - |
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