You are here

Home

KJC3_000028-T1, KJC3_000028-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000028-T1
Unique NameKJC3_000028-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at JC12F:312421..313293+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000028-T1 ID=KJC3_000028-T1|Name=KJC3_000028-T1|organism=Aspergillus niger KJC3|type=mRNA|length=873bp|location=Sequence derived from alignment at JC12F:312421..313293+ (Aspergillus niger KJC3)
GTTCATGGGGCGGACATCTTGGTAGTGGCCTGGTCCAACTGGAAAGACCA
CCATGTGAAGTCGGCAACTAATGTCGCTCATATGAAACATCTAACGCCGA
ATAGGTGTAGGTGCTATAATATGCATGGTGAATATGCATGCGCCTAATGA
TTGGTAACCCAAATTCATTCTTCGCGTATCATCCCGCAAACGATGTATGT
CATCACTTCTGGTCTTGGTGCTCATCTAATGTATTTAATACCCCAAAGAT
CCTTCGAAGGCCTCCGATAAATTTGCTGTTCACCGAAGATCAACTGAAGT
TCAAGCCTACGTTTTCAGACAAGTCAATATCTTGTTGGTAAGTGACTTCA
CTCCCTGAACCTATCTTGCCCTTGCCCCTTCTCTCTCACTTTATTGATTG
TCTCTGTTGGCCTCTGAAGATATATTCTAACTTCTTGGACCAAAGATAAA
TAGCCATCTACAGCCAACATGTCGTCCACCTCCGAACTAAGTGTCGCCAT
CTACAAAGACGAAGGCATATACAAACACTGGAGCCTCTTCATTGATGGGC
CGACAGACCCAGAGAAGATCATCCTCCATATCATGGGATCTTCGACCCGA
TACCGCTTCGAAATGAGAAACTCGAATGCTCGTTACTCGGCTACCCTCAT
TGAGCTGGTGTATCTGTGTCATGTGGATAATTCCAAGATCAATGCTATAA
AGGACGCTGCCCAGAAGATGACAATCCCCAACGAACATCCAGGCTATAAC
TGTCAGGACTATATCCTTGAGCTTTTGGATCAGTTGGAAGAGGAAAAGAT
TATCGATCGTAGCAATGCGAGCTACAAAAGGAACAGAAAGAAGGTCGAGG
ACAAGCAGGAAGGCCTGAATTAG
back to top

Coding sequence (CDS) from alignment at JC12F:312421..313293+

>KJC3_000028-T1 ID=KJC3_000028-T1|Name=KJC3_000028-T1|organism=Aspergillus niger KJC3|type=CDS|length=405bp|location=Sequence derived from alignment at JC12F:312421..313293+ (Aspergillus niger KJC3)
ATGTCGTCCACCTCCGAACTAAGTGTCGCCATCTACAAAGACGAAGGCAT
ATACAAACACTGGAGCCTCTTCATTGATGGGCCGACAGACCCAGAGAAGA
TCATCCTCCATATCATGGGATCTTCGACCCGATACCGCTTCGAAATGAGA
AACTCGAATGCTCGTTACTCGGCTACCCTCATTGAGCTGGTGTATCTGTG
TCATGTGGATAATTCCAAGATCAATGCTATAAAGGACGCTGCCCAGAAGA
TGACAATCCCCAACGAACATCCAGGCTATAACTGTCAGGACTATATCCTT
GAGCTTTTGGATCAGTTGGAAGAGGAAAAGATTATCGATCGTAGCAATGC
GAGCTACAAAAGGAACAGAAAGAAGGTCGAGGACAAGCAGGAAGGCCTGA
ATTAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000028KJC3_000028Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000028-T1KJC3_000028-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000028-T1.utr5p1KJC3_000028-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_000028-T1.utr5p2KJC3_000028-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_000028-T1.utr5p3KJC3_000028-T1.utr5p3Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000028-T1.exon1KJC3_000028-T1.exon1Aspergillus niger KJC3exon
KJC3_000028-T1.exon2KJC3_000028-T1.exon2Aspergillus niger KJC3exon
KJC3_000028-T1.exon3KJC3_000028-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000028-T1.cdsKJC3_000028-T1.cdsAspergillus niger KJC3CDS


Properties
Property NameValue
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JC12FsupercontigJC12F:312421..313293 +
Powered by Drupal