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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC12F:358269..359332+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000033-T2 ID=KJC3_000033-T2|Name=KJC3_000033-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1064bp|location=Sequence derived from alignment at JC12F:358269..359332+ (Aspergillus niger KJC3) CAGAAATCTGTTGACTAATTGTGGCAAAAGTCATGGCCTGTGATTACCAG
GGCGACTGCTCTAACAGTAAGCATGATCAATTTTGGTCCTCCCGGCATCG
CTGTGATCTGACAAAGAGGCAAAAGTCTTCGAAGATCTCTCGAAAAGCAC
AGAAATCCAACTAAACGATGATCATGCCGTTTTCCATTATTCTGAAGACA
TTTTCTCTAGATTACCGTGGACTATCTTTCAAATGATACAGGAGGCTTGG
CTTAATGATGCAAAGATCAACCTTCACCATGAACGCCGCCTAGTTCGCAA
GAGTGTGTCATGACCAACAACTCAACTGTGTTTCCATAGCTCACTACCAG
ATTCTCAGCACAAATCCGCCACTTAGTCGGAATCCTACTCCGAAGTGATG
CCAAATCTCTACGGTTTATACTTGACCAGCTGAAAATGGACCACTTGTGG
AGGTTTGGAAGAATGGTGGAGCATGTGCTCGATATACGTGATAGACAGGA
TGCATACCATAACTGCCCCTCTGGTACGTGACGATATTCTGGTTATGATT
CGCAGGAGGGCTCACATAGATGTCTGAAATAGACAGCAATAGAACTATTC
CAATCCGGCATCTGCACCTTCCTCTGCTCATCCCTGGCACACACACTTCT
ACGATTTCGGATCAGAGTATAGTCGACCTTGGACAAACTATGCTGAGCGC
TGCCCCAAGCTCGGATATGGATCAACCTAACCAATATTGCACATTCTATA
GCGAGCAATTTAGGAAACTTAGATTCTGGTCACTGGAAACAACAGCCTGG
GCGATTATGGAGTATATTGAGCCGACTAAGGCTTCCACATATCCGTACGG
AGGGAAAGGACCGGGATGGTGGCCACCATATGTGTCTCACCAACGTCCTC
GATACCTCAAAAAAGAAGGTCAGTTCGACTGCCCGGCATTCGTTACCTGC
TCTAACACCCCCAAAGGCACGATTAAGTTATTGCTTTTCTTGTTATGCGA
GTTATACCAGCAGGGGCTTAGAATTAATCCATTGGAAGGATGCTATGCGT
TCAGTGTCACTTGA back to topCoding sequence (CDS) from alignment at JC12F:358269..359332+ >KJC3_000033-T2 ID=KJC3_000033-T2|Name=KJC3_000033-T2|organism=Aspergillus niger KJC3|type=CDS|length=2676bp|location=Sequence derived from alignment at JC12F:358269..359332+ (Aspergillus niger KJC3) ATGATACAGGAGGCTTGGCTTAATGATGCAAAGATCAACCTTCACCATGA ACGCCGCCTAGTTCGCAAGACACAAATCCGCCACTTAGTCGGAATCCTAC TCCGAAGTGATGCCAAATCTCTACGGTTTATACTTGACCAGCTGAAAATG GACCACTTGTGGAGGTTTGGAAGAATGGTGGAGCATGTGCTCGATATACG TGATAGACAGGATGCATACCATAACTGCCCCTCTGACAGCAATAGAACTA TTCCAATCCGGCATCTGCACCTTCCTCTGCTCATCCCTGGCACACACACT TCTACGATTTCGGATCAGAGTATAGTCGACCTTGGACAAACTATGCTGAG CGCTGCCCCAAGCTCGGATATGGATCAACCTAACCAATATTGCACATTCT ATAGCGAGCAATTTAGGAAACTTAGATTCTGGTCACTGGAAACAACAGCC TGGGCGATTATGGAGTATATTGAGCCGACTAAGGCTTCCACATATCCGTA CGGAGGGAAAGGACCGGGATGGTGGCCACCATATGTGTCTCACCAACGTC CTCGATACCTCAAAAAAGAAGGCACGATTAAGTTATTGCTTTTCTTGTTA TGCGAGTTATACCAGCAGGGGCTTAGAATTAATCCATTGGAAGGATGCTA TGCGTTCAGTGTCACTTGAATGATACAGGAGGCTTGGCTTAATGATGCAA AGATCAACCTTCACCATGAACGCCGCCTAGTTCGCAAGACACAAATCCGC CACTTAGTCGGAATCCTACTCCGAAGTGATGCCAAATCTCTACGGTTTAT ACTTGACCAGCTGAAAATGGACCACTTGTGGAGGTTTGGAAGAATGGTGG AGCATGTGCTCGATATACGTGATAGACAGGATGCATACCATAACTGCCCC TCTGACAGCAATAGAACTATTCCAATCCGGCATCTGCACCTTCCTCTGCT CATCCCTGGCACACACACTTCTACGATTTCGGATCAGAGTATAGTCGACC TTGGACAAACTATGCTGAGCGCTGCCCCAAGCTCGGATATGGATCAACCT AACCAATATTGCACATTCTATAGCGAGCAATTTAGGAAACTTAGATTCTG GTCACTGGAAACAACAGCCTGGGCGATTATGGAGTATATTGAGCCGACTA AGGCTTCCACATATCCGTACGGAGGGAAAGGACCGGGATGGTGGCCACCA TATGTGTCTCACCAACGTCCTCGATACCTCAAAAAAGAAGGCACGATTAA GTTATTGCTTTTCTTGTTATGCGAGTTATACCAGCAGGGGCTTAGAATTA ATCCATTGGAAGGATGCTATGCGTTCAGTGTCACTTGAATGATACAGGAG GCTTGGCTTAATGATGCAAAGATCAACCTTCACCATGAACGCCGCCTAGT TCGCAAGACACAAATCCGCCACTTAGTCGGAATCCTACTCCGAAGTGATG CCAAATCTCTACGGTTTATACTTGACCAGCTGAAAATGGACCACTTGTGG AGGTTTGGAAGAATGGTGGAGCATGTGCTCGATATACGTGATAGACAGGA TGCATACCATAACTGCCCCTCTGACAGCAATAGAACTATTCCAATCCGGC ATCTGCACCTTCCTCTGCTCATCCCTGGCACACACACTTCTACGATTTCG GATCAGAGTATAGTCGACCTTGGACAAACTATGCTGAGCGCTGCCCCAAG CTCGGATATGGATCAACCTAACCAATATTGCACATTCTATAGCGAGCAAT TTAGGAAACTTAGATTCTGGTCACTGGAAACAACAGCCTGGGCGATTATG GAGTATATTGAGCCGACTAAGGCTTCCACATATCCGTACGGAGGGAAAGG ACCGGGATGGTGGCCACCATATGTGTCTCACCAACGTCCTCGATACCTCA AAAAAGAAGGCACGATTAAGTTATTGCTTTTCTTGTTATGCGAGTTATAC CAGCAGGGGCTTAGAATTAATCCATTGGAAGGATGCTATGCGTTCAGTGT CACTTGAATGATACAGGAGGCTTGGCTTAATGATGCAAAGATCAACCTTC ACCATGAACGCCGCCTAGTTCGCAAGACACAAATCCGCCACTTAGTCGGA ATCCTACTCCGAAGTGATGCCAAATCTCTACGGTTTATACTTGACCAGCT GAAAATGGACCACTTGTGGAGGTTTGGAAGAATGGTGGAGCATGTGCTCG ATATACGTGATAGACAGGATGCATACCATAACTGCCCCTCTGACAGCAAT AGAACTATTCCAATCCGGCATCTGCACCTTCCTCTGCTCATCCCTGGCAC ACACACTTCTACGATTTCGGATCAGAGTATAGTCGACCTTGGACAAACTA TGCTGAGCGCTGCCCCAAGCTCGGATATGGATCAACCTAACCAATATTGC ACATTCTATAGCGAGCAATTTAGGAAACTTAGATTCTGGTCACTGGAAAC AACAGCCTGGGCGATTATGGAGTATATTGAGCCGACTAAGGCTTCCACAT ATCCGTACGGAGGGAAAGGACCGGGATGGTGGCCACCATATGTGTCTCAC CAACGTCCTCGATACCTCAAAAAAGAAGGCACGATTAAGTTATTGCTTTT CTTGTTATGCGAGTTATACCAGCAGGGGCTTAGAATTAATCCATTGGAAG GATGCTATGCGTTCAGTGTCACTTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_000033-T2.utr5p1 | KJC3_000033-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
Property Name | Value |
DBxref | InterPro:IPR021264 |
DBxref | PFAM:PF11001 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
JC12F | supercontig | JC12F:358269..359332 + |
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