You are here

Home

KJC3_000048-T1, KJC3_000048-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000048-T1
Unique NameKJC3_000048-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at JC14F:90646..91956+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000048-T1 ID=KJC3_000048-T1|Name=KJC3_000048-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1311bp|location=Sequence derived from alignment at JC14F:90646..91956+ (Aspergillus niger KJC3)
ATGGGCCAAGATCACTGCGACCACGATCCTACGCAGACTTCTTCTACACC
TGACGTATGCTCGCACTTAGCTGCTTATGAAGACCATCGGGCAGCCGCCA
CACAGTTCTCTCAAGACAATGATGCCGACATTGACGCCGGACTAGGATAT
AATTTCATGTATTTGCTATACTGGGCACTATCGGGAGACCAACTGAGAGC
GACTGAGGGACTTTCTGAGGGCCTGGAGATTGACATAAATTGTTGCGATC
GCTTCGGATATGCTCCTCTTACGCTGGCAGCTTACAGGGGCTCTTGCCAT
GTTGCCAGGAAGCTGCTTGCGTCCGGAGCAGATTTCAATGCGCAAGACAC
CAACGGGTTGACCGCGCTTCATATAGCGGCTTGCGAAGGAGATATGCTGG
TTGTGGAGCTGCTCCTGCAACATCCTGAGGTTGATGTCAACGCGCAAGAC
ACTGACGGGTTGACTGCGCTTCATATAGCGGCAGGCGAAGGACATATGCC
GGTTGTGGAGCTGCTCCTGCAACATCCTCGGGTTGATGTCAATGTGCAAA
ACACCGACGGGTTGACCGCGCTTCATATAGCAGCAGGCGAAGAATATTCG
CCTATTGTGGAACTGCTCCTTCAAAAACATAAGCTTGATGTCAATACACA
AGACATCGAAGGGTTAACCGCACTTCATGATGCGGCATATGAAGGACGTT
TGCTAAGTCTGAAGCTGCTCCTGCAACACACAGGAATCATTGTTAATAAA
CTGGACAAGTGCGGGTTAACCGCGCTTCATAAAGCGGCAAATAAAGGACA
TCTGCCAACTGTCGAGCTGCTCCTGCAACATCCTGAGGTGGACGTCAATG
GGCGAGACACTCGAGGACGTACGCCACTGTGGTGGGCAGTTGCGCACCAA
CCCGAAGTGGCAAGCCGGCTGCTTGACGATACCAGGATCGCTGTGAATAT
TGTGGATGGACAGGGTTCATCGTACCTCCACCTTGCTGTGCAGACCAGTA
ATAATTTACTCGTCAATAAGTTATTGGCAGGGTACGACATGAATCCGAAT
TTAAAGGATGAAAGCGGTCGGACTGCTCTCTCATATGCAAAAGAAAATGG
AGACATCTCGATATGGTGCTGCCTCCTGGGCGACCCCCGGCTGAACGCTA
ATGACAACTGCGACCATGTTCCATTCCGACTGGTACAATGCCAGCGTCAC
AAAATCAACGCGCCTGGCATAAGAAAGAAAAAGATTCTTGGACTGCTGGT
GGCGCCGTACTTGTTCATTGTTATCCGCCATCTTTGCTCTAGTTTCTCTA
TTTTGGAATAA
back to top

Coding sequence (CDS) from alignment at JC14F:90646..91956+

>KJC3_000048-T1 ID=KJC3_000048-T1|Name=KJC3_000048-T1|organism=Aspergillus niger KJC3|type=CDS|length=1311bp|location=Sequence derived from alignment at JC14F:90646..91956+ (Aspergillus niger KJC3)
ATGGGCCAAGATCACTGCGACCACGATCCTACGCAGACTTCTTCTACACC
TGACGTATGCTCGCACTTAGCTGCTTATGAAGACCATCGGGCAGCCGCCA
CACAGTTCTCTCAAGACAATGATGCCGACATTGACGCCGGACTAGGATAT
AATTTCATGTATTTGCTATACTGGGCACTATCGGGAGACCAACTGAGAGC
GACTGAGGGACTTTCTGAGGGCCTGGAGATTGACATAAATTGTTGCGATC
GCTTCGGATATGCTCCTCTTACGCTGGCAGCTTACAGGGGCTCTTGCCAT
GTTGCCAGGAAGCTGCTTGCGTCCGGAGCAGATTTCAATGCGCAAGACAC
CAACGGGTTGACCGCGCTTCATATAGCGGCTTGCGAAGGAGATATGCTGG
TTGTGGAGCTGCTCCTGCAACATCCTGAGGTTGATGTCAACGCGCAAGAC
ACTGACGGGTTGACTGCGCTTCATATAGCGGCAGGCGAAGGACATATGCC
GGTTGTGGAGCTGCTCCTGCAACATCCTCGGGTTGATGTCAATGTGCAAA
ACACCGACGGGTTGACCGCGCTTCATATAGCAGCAGGCGAAGAATATTCG
CCTATTGTGGAACTGCTCCTTCAAAAACATAAGCTTGATGTCAATACACA
AGACATCGAAGGGTTAACCGCACTTCATGATGCGGCATATGAAGGACGTT
TGCTAAGTCTGAAGCTGCTCCTGCAACACACAGGAATCATTGTTAATAAA
CTGGACAAGTGCGGGTTAACCGCGCTTCATAAAGCGGCAAATAAAGGACA
TCTGCCAACTGTCGAGCTGCTCCTGCAACATCCTGAGGTGGACGTCAATG
GGCGAGACACTCGAGGACGTACGCCACTGTGGTGGGCAGTTGCGCACCAA
CCCGAAGTGGCAAGCCGGCTGCTTGACGATACCAGGATCGCTGTGAATAT
TGTGGATGGACAGGGTTCATCGTACCTCCACCTTGCTGTGCAGACCAGTA
ATAATTTACTCGTCAATAAGTTATTGGCAGGGTACGACATGAATCCGAAT
TTAAAGGATGAAAGCGGTCGGACTGCTCTCTCATATGCAAAAGAAAATGG
AGACATCTCGATATGGTGCTGCCTCCTGGGCGACCCCCGGCTGAACGCTA
ATGACAACTGCGACCATGTTCCATTCCGACTGGTACAATGCCAGCGTCAC
AAAATCAACGCGCCTGGCATAAGAAAGAAAAAGATTCTTGGACTGCTGGT
GGCGCCGTACTTGTTCATTGTTATCCGCCATCTTTGCTCTAGTTTCTCTA
TTTTGGAATAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000048KJC3_000048Aspergillus niger KJC3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000048-T1.exon1KJC3_000048-T1.exon1Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000048-T1.cdsKJC3_000048-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000048-T1KJC3_000048-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036770
DBxrefInterPro:IPR020683
DBxrefInterPro:IPR002110
DBxrefPFAM:PF13857
DBxrefPFAM:PF13637
DBxrefPFAM:PF13606
DBxrefPFAM:PF12796
DBxrefPFAM:PF00023
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JC14FsupercontigJC14F:90646..91956 +
Powered by Drupal