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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC15F:196128..197596- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000096-T1 ID=KJC3_000096-T1|Name=KJC3_000096-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1469bp|location=Sequence derived from alignment at JC15F:196128..197596- (Aspergillus niger KJC3)
GTCCTTGATGGTCTATTTGGTCTAAAAGTCCATCAAGAGCCGGTCGTTCC
CTACAAGATTCTAAGCAGCATGAGTACCTTCGTCTCATGCTTACTCTGAT
GCTACTCAAATTTGCACTCTGATAATTGATCATATCAATAAAAATTACGT
CTAGAGTAAACATGACCTTTGTCGTAGGTACCCGCAATCCTGATGATTGC
ACCGGCGTGGTCTGCCAGAAGGTTAACACACATATTCAGCCTCTCTTCCT
TCCACTTACAGTCTGCTAATTCGAAAACGGACCAAGATGCACTGCAATCA
TAATAGATCGCACCGCCCGGAGACGATATCCTACGCGGAATACGCAGCTG
CCCATTGCTCAATGAACTTTATGAGAACATTTGCTGGCGCAGCCAGTGGT
ATTGCTTCCAGCATAGTGACGTGCCCGTTAGACGTGGTTAAGACAAGACT
GCAAGCTCAAGGCGGTTTTCGGAAGCCATCACACTCTCGTATGGCGTCCA
CAAACCGCAGTATACTGGATGTCAGCCGCGCTGTGTGGCTTGAGAAGGGT
CCAAGGGGAATGTATCAAGGACTAGGATTAACTGTACTGGGCTATATCCC
TAGATGGGCCATCTTCTTTAGCATTTACCATCGATGCTATGAAATGTTTC
ATGATTATTTTGGTTTGTCTACCCAGATAAATTTGTCGGGTGCTCTGATA
TGTTGATGGCTAAATAATGTGCGCAGACTTTAAAAGCCAATCAGTAACAT
CGCTCATGTCGTCTCTAACAGCAGGGACTTGTTCTATAGTCACTACAAAC
CCAATTCAGGTGGTCAGAGCCAGGCTCATATCACGGAGCGGCGTTTCCGG
TCAAGCATATTCGAGGCCGTTGTGGCAATACAGCTCAGCTTATGATGCGG
CTCGGCAAATCTATTGCAATGAAGGCATTCCAGCTTTCTACTCCGGTTTG
ACCCCAGCTCTTATGGGCGTGTCGCACCTCGCAATCCAATTTCCCCTCTA
CGAGGCCTTAAAGCGGAAGCTCACAGGCTCGGGATTAGGCGAATATGACC
GGAAGCCCTCCCATAACCTTTTAGGTGTTCTGAGCAAGATAATTTCTACT
GCTTCCACTTACCCTCACGAGGTCATTCGAACGCGACTTCAGACCCAACA
GAGACTCAAATCAAATATCATCGCATCGCGAAAGTTTGGAGGCATACAAG
AAATTGTTTATAATATTTGGAAGACGGAGGGATGGAAAGCTTTCTATGCT
GGCTTGGGCGCTAGCATGATACGTGCTGTACCGGCCTCGGTGACCACAAT
GCTAGTCTATGAGAACATGTTAAGTGTCCTGATCAGTACAAAAGCTGATG
GCGAAAGGAAATTAGCAGATCAAAGCTGTACACCGTAACATGCTTCAGCA
AATCGGAATGTTAAATTTCACAGTCTCTCGCCTTATACAGTGCATCAACC
TACATCAATCTGACATGGA back to topCoding sequence (CDS) from alignment at JC15F:196128..197596- >KJC3_000096-T1 ID=KJC3_000096-T1|Name=KJC3_000096-T1|organism=Aspergillus niger KJC3|type=CDS|length=2076bp|location=Sequence derived from alignment at JC15F:196128..197596- (Aspergillus niger KJC3)
ACTTTAAAAGCCAATCAGTAACATCGCTCATGTCGTCTCTAACAGCAGGG
ACTTGTTCTATAGTCACTACAAACCCAATTCAGGTGGTCAGAGCCAGGCT
CATATCACGGAGCGGCGTTTCCGGTCAAGCATATTCGAGGCCGTTGTGGC
AATACAGCTCAGCTTATGATGCGGCTCGGCAAATCTATTGCAATGAAGGC
ATTCCAGCTTTCTACTCCGGTTTGACCCCAGCTCTTATGGGCGTGTCGCA
CCTCGCAATCCAATTTCCCCTCTACGAGGCCTTAAAGCGGAAGCTCACAG
GCTCGGGATTAGGCGAATATGACCGGAAGCCCTCCCATAACCTTTTAGGT
GTTCTGAGCAAGATAATTTCTACTGCTTCCACTTACCCTCACGAGGTCAT
TCGAACGCGACTTCAGACCCAACAGAGACTCAAATCAAATATCATCGCAT
CGCGAAAGTTTGGAGGCATACAAGAAATTGTTTATAATATTTGGAAGACG
GAGGGATGGAAAGCTTTCTATGCTGGCTTGGGCGCTAGCATGATACGTGC
TGTACCGGCCTCGGTGACCACAATGCTAGTCTATGAGAACATGTTAAGTG
TCCTGATCAGTACAAAAGCTGATGGCGAAAGGAAATTAGCAGATCAAAGC
TGTACACCGTAAATGCACTGCAATCATAATAGATCGCACCGCCCGGAGAC
GATATCCTACGCGGAATACGCAGCTGCCCATTGCTCAATGAACTTTATGA
GAACATTTGCTGGCGCAGCCAGTGGTATTGCTTCCAGCATAGTGACGTGC
CCGTTAGACGTGGTTAAGACAAGACTGCAAGCTCAAGGCGGTTTTCGGAA
GCCATCACACTCTCGTATGGCGTCCACAAACCGCAGTATACTGGATGTCA
GCCGCGCTGTGTGGCTTGAGAAGGGTCCAAGGGGAATGTATCAAGGACTA
GGATTAACTGTACTGGGCTATATCCCTAGATGGGCCATCTTCTTTAGCAT
TTACCATCGATGCTATGAAATGTTTCATGATTATTTTGACTTTAAAAGCC
AATCAGTAACATCGCTCATGTCGTCTCTAACAGCAGGGACTTGTTCTATA
GTCACTACAAACCCAATTCAGGTGGTCAGAGCCAGGCTCATATCACGGAG
CGGCGTTTCCGGTCAAGCATATTCGAGGCCGTTGTGGCAATACAGCTCAG
CTTATGATGCGGCTCGGCAAATCTATTGCAATGAAGGCATTCCAGCTTTC
TACTCCGGTTTGACCCCAGCTCTTATGGGCGTGTCGCACCTCGCAATCCA
ATTTCCCCTCTACGAGGCCTTAAAGCGGAAGCTCACAGGCTCGGGATTAG
GCGAATATGACCGGAAGCCCTCCCATAACCTTTTAGGTGTTCTGAGCAAG
ATAATTTCTACTGCTTCCACTTACCCTCACGAGGTCATTCGAACGCGACT
TCAGACCCAACAGAGACTCAAATCAAATATCATCGCATCGCGAAAGTTTG
GAGGCATACAAGAAATTGTTTATAATATTTGGAAGACGGAGGGATGGAAA
GCTTTCTATGCTGGCTTGGGCGCTAGCATGATACGTGCTGTACCGGCCTC
GGTGACCACAATGCTAGTCTATGAGAACATGTTAAGTGTCCTGATCAGTA
CAAAAGCTGATGGCGAAAGGAAATTAGCAGATCAAAGCTGTACACCGTAA
ATGCACTGCAATCATAATAGATCGCACCGCCCGGAGACGATATCCTACGC
GGAATACGCAGCTGCCCATTGCTCAATGAACTTTATGAGAACATTTGCTG
GCGCAGCCAGTGGTATTGCTTCCAGCATAGTGACGTGCCCGTTAGACGTG
GTTAAGACAAGACTGCAAGCTCAAGGCGGTTTTCGGAAGCCATCACACTC
TCGTATGGCGTCCACAAACCGCAGTATACTGGATGTCAGCCGCGCTGTGT
GGCTTGAGAAGGGTCCAAGGGGAATGTATCAAGGACTAGGATTAACTGTA
CTGGGCTATATCCCTAGATGGGCCATCTTCTTTAGCATTTACCATCGATG
CTATGAAATGTTTCATGATTATTTTG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005347 | ATP transmembrane transporter activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000096-T1.utr3p1 | KJC3_000096-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR018108 |
| DBxref | InterPro:IPR023395 |
| DBxref | InterPro:IPR002067 |
| DBxref | PFAM:PF00153 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| JC15F | supercontig | JC15F:196128..197596 - |
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