You are here

Home

KJC3_000100-T1, KJC3_000100-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000100-T1
Unique NameKJC3_000100-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at JC15F:209444..210953+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000100-T1 ID=KJC3_000100-T1|Name=KJC3_000100-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1510bp|location=Sequence derived from alignment at JC15F:209444..210953+ (Aspergillus niger KJC3)
GTAAAATCCAAAGGTTTGCAAAAATTCTGCACAATGCCGCCTCCTGCCGA
TATTGTCCCCTTGTGGTTCCAATGTGACTATCCAGATTGCAACGCTAAAT
ATCGGCGTAAAGAGCACCTGAATCGACATCGTAATCATCATGATAAGGGC
ATCAATCTCGCCTGTCCTTATTGTGAGAGCGTCCTGACCAGGAAGTGAGT
AGTTTCTCCGATCCCGCGGGAGGACCTTGAACTTAGAGAGTAATCAGTGA
CCTGTTGCGACGCCATATCCGGACTTACCATCCGCAAAGAGAACTGCCGC
CGTCTCGAAAATTTAGGGCTTGTAGTGCATGTCATGCACGGAAAGTCCGT
TGTGAAGGTGTATTACCATGCAATGCCTGTCAACATCGCGGCGTCTTCTG
TGTGCCTAGTGGGGGTGAAACCGTAAGCGAACAACAATTTTCGATCGATG
ATCTCTGCCCTTTGCCACCTGTTTCCACGATTAATGATTCCGTTTCTGAC
GCTCCCCGGTGGATTGCTCATGACTATATTGATATTTACTTTAATACTTT
CCATCCAAAATGGCCGTTTCTCCATCAAAGTACATTTGACTTCGCCAAGG
AACCTTGTGTACTTGTTCAATCCGTTGTCGCAATTGGACTTTGGGTGAAA
GGGACTCAGGAGGCACGAGACGCATCGATACGTCTACATAATAGACTATG
TTCCGCATTTTACGCTCAAATGGTGAGAAGAAGAAGCATTATAACAGTAA
CTGCATATAGAATTGTGTGTTGATATCATCTTTTTGCTCTAGGACCAATG
GTGCATCTCCAACTCGAGTCCACGCCAACACACAAATACCTCGTGGCCTA
TAACATCATTTCAGAGTGTGCTCTTGAATATCATTCTTTCTCTTTTCATT
GCAAGAGAGAATGCTAGTACAGATTTGAGCATGCGATGCCGATTACCAGA
CGACAAATATGACCTCTTGGCTGCGCTTGTTCAAAGCTGTCGAAGGTGGG
GTATTTTCTACTACCCTAACATGCTTCTGCAACACGATGCCGATGCACCA
CTCGCGCTTGTATATGTGAGCGTTGAAGAGATCAAGAGATTTGGACTAGC
CCTCTATAAGGTGTGCCGATTGTCCACGCCCACTTCATTTGACTTGAGCG
GAGAATGTTCCAATGGTGGCAGAAACGATCTTTTGACCCTGGCCGACTTG
TCCTTTTGCATGCCAGACAGTGATGAGCTGTGGAATGCTCCATTGGGCGG
GGAGTCCGAGGTGTTAAACAAGTCTGATTCATCCGCGGTGGGACGGGATA
ATGGAGATGCGAAAAACTGGATATCTCAAGCATCTGCTCTTCTACATGAC
GCACGAGTTGGCTTTGATTGGATATAGCAGAAACTATCATAGAAGATGCG
GCTATTTAGCCACATATCAAAATGCAGCCCATAAAGGCAACGATCGAACA
TATTCCCTTACTATTTTCTTTCATGCTAGAGTGGCAAAGTCTTGATAAAT
ATGAAGAAAC
back to top

Coding sequence (CDS) from alignment at JC15F:209444..210953+

>KJC3_000100-T1 ID=KJC3_000100-T1|Name=KJC3_000100-T1|organism=Aspergillus niger KJC3|type=CDS|length=3663bp|location=Sequence derived from alignment at JC15F:209444..210953+ (Aspergillus niger KJC3)
ATGCCGCCTCCTGCCGATATTGTCCCCTTGTGGTTCCAATGTGACTATCC
AGATTGCAACGCTAAATATCGGCGTAAAGAGCACCTGAATCGACATCGTA
ATCATCATGATAAGGGCATCAATCTCGCCTGTCCTTATTGTGAGAGCGTC
CTGACCAGGAATGACCTGTTGCGACGCCATATCCGGACTTACCATCCGCA
AAGAGAACTGCCGCCGTCTCGAAAATTTAGGGCTTGTAGTGCATGTCATG
CACGGAAAGTCCGTTGTGAAGGTGTATTACCATGCAATGCCTGTCAACAT
CGCGGCGTCTTCTGTGTGCCTAGTGGGGGTGAAACCGTAAGCGAACAACA
ATTTTCGATCGATGATCTCTGCCCTTTGCCACCTGTTTCCACGATTAATG
ATTCCGTTTCTGACGCTCCCCGGTGGATTGCTCATGACTATATTGATATT
TACTTTAATACTTTCCATCCAAAATGGCCGTTTCTCCATCAAAGTACATT
TGACTTCGCCAAGGAACCTTGTGTACTTGTTCAATCCGTTGTCGCAATTG
GACTTTGGGTGAAAGGGACTCAGGAGGCACGAGACGCATCGATACGTCTA
CATAATAGACTATGTTCCGCATTTTACGCTCAAATGGACCAATGGTGCAT
CTCCAACTCGAGTCCACGCCAACACACAAATACCTCGTGGCCTATAACAT
CATTTCAGAGTGTGCTCTTGAATATCATTCTTTCTCTTTTCATTGCAAGA
GAGAATGCTAGTACAGATTTGAGCATGCGATGCCGATTACCAGACGACAA
ATATGACCTCTTGGCTGCGCTTGTTCAAAGCTGTCGAAGGTGGGGTATTT
TCTACTACCCTAACATGCTTCTGCAACACGATGCCGATGCACCACTCGCG
CTTGTATATGTGAGCGTTGAAGAGATCAAGAGATTTGGACTAGCCCTCTA
TAAGGTGTGCCGATTGTCCACGCCCACTTCATTTGACTTGAGCGGAGAAT
GTTCCAATGGTGGCAGAAACGATCTTTTGACCCTGGCCGACTTGTCCTTT
TGCATGCCAGACAGTGATGAGCTGTGGAATGCTCCATTGGGCGGGGAGTC
CGAGGTGTTAAACAAGTCTGATTCATCCGCGGTGGGACGGGATAATGGAG
ATGCGAAAAACTGGATATCTCAAGCATCTGCTCTTCTACATGACGCACGA
GTTGGCTTTGATTGGATATAGATGCCGCCTCCTGCCGATATTGTCCCCTT
GTGGTTCCAATGTGACTATCCAGATTGCAACGCTAAATATCGGCGTAAAG
AGCACCTGAATCGACATCGTAATCATCATGATAAGGGCATCAATCTCGCC
TGTCCTTATTGTGAGAGCGTCCTGACCAGGAATGACCTGTTGCGACGCCA
TATCCGGACTTACCATCCGCAAAGAGAACTGCCGCCGTCTCGAAAATTTA
GGGCTTGTAGTGCATGTCATGCACGGAAAGTCCGTTGTGAAGGTGTATTA
CCATGCAATGCCTGTCAACATCGCGGCGTCTTCTGTGTGCCTAGTGGGGG
TGAAACCGTAAGCGAACAACAATTTTCGATCGATGATCTCTGCCCTTTGC
CACCTGTTTCCACGATTAATGATTCCGTTTCTGACGCTCCCCGGTGGATT
GCTCATGACTATATTGATATTTACTTTAATACTTTCCATCCAAAATGGCC
GTTTCTCCATCAAAGTACATTTGACTTCGCCAAGGAACCTTGTGTACTTG
TTCAATCCGTTGTCGCAATTGGACTTTGGGTGAAAGGGACTCAGGAGGCA
CGAGACGCATCGATACGTCTACATAATAGACTATGTTCCGCATTTTACGC
TCAAATGGACCAATGGTGCATCTCCAACTCGAGTCCACGCCAACACACAA
ATACCTCGTGGCCTATAACATCATTTCAGAGTGTGCTCTTGAATATCATT
CTTTCTCTTTTCATTGCAAGAGAGAATGCTAGTACAGATTTGAGCATGCG
ATGCCGATTACCAGACGACAAATATGACCTCTTGGCTGCGCTTGTTCAAA
GCTGTCGAAGGTGGGGTATTTTCTACTACCCTAACATGCTTCTGCAACAC
GATGCCGATGCACCACTCGCGCTTGTATATGTGAGCGTTGAAGAGATCAA
GAGATTTGGACTAGCCCTCTATAAGGTGTGCCGATTGTCCACGCCCACTT
CATTTGACTTGAGCGGAGAATGTTCCAATGGTGGCAGAAACGATCTTTTG
ACCCTGGCCGACTTGTCCTTTTGCATGCCAGACAGTGATGAGCTGTGGAA
TGCTCCATTGGGCGGGGAGTCCGAGGTGTTAAACAAGTCTGATTCATCCG
CGGTGGGACGGGATAATGGAGATGCGAAAAACTGGATATCTCAAGCATCT
GCTCTTCTACATGACGCACGAGTTGGCTTTGATTGGATATAGATGCCGCC
TCCTGCCGATATTGTCCCCTTGTGGTTCCAATGTGACTATCCAGATTGCA
ACGCTAAATATCGGCGTAAAGAGCACCTGAATCGACATCGTAATCATCAT
GATAAGGGCATCAATCTCGCCTGTCCTTATTGTGAGAGCGTCCTGACCAG
GAATGACCTGTTGCGACGCCATATCCGGACTTACCATCCGCAAAGAGAAC
TGCCGCCGTCTCGAAAATTTAGGGCTTGTAGTGCATGTCATGCACGGAAA
GTCCGTTGTGAAGGTGTATTACCATGCAATGCCTGTCAACATCGCGGCGT
CTTCTGTGTGCCTAGTGGGGGTGAAACCGTAAGCGAACAACAATTTTCGA
TCGATGATCTCTGCCCTTTGCCACCTGTTTCCACGATTAATGATTCCGTT
TCTGACGCTCCCCGGTGGATTGCTCATGACTATATTGATATTTACTTTAA
TACTTTCCATCCAAAATGGCCGTTTCTCCATCAAAGTACATTTGACTTCG
CCAAGGAACCTTGTGTACTTGTTCAATCCGTTGTCGCAATTGGACTTTGG
GTGAAAGGGACTCAGGAGGCACGAGACGCATCGATACGTCTACATAATAG
ACTATGTTCCGCATTTTACGCTCAAATGGACCAATGGTGCATCTCCAACT
CGAGTCCACGCCAACACACAAATACCTCGTGGCCTATAACATCATTTCAG
AGTGTGCTCTTGAATATCATTCTTTCTCTTTTCATTGCAAGAGAGAATGC
TAGTACAGATTTGAGCATGCGATGCCGATTACCAGACGACAAATATGACC
TCTTGGCTGCGCTTGTTCAAAGCTGTCGAAGGTGGGGTATTTTCTACTAC
CCTAACATGCTTCTGCAACACGATGCCGATGCACCACTCGCGCTTGTATA
TGTGAGCGTTGAAGAGATCAAGAGATTTGGACTAGCCCTCTATAAGGTGT
GCCGATTGTCCACGCCCACTTCATTTGACTTGAGCGGAGAATGTTCCAAT
GGTGGCAGAAACGATCTTTTGACCCTGGCCGACTTGTCCTTTTGCATGCC
AGACAGTGATGAGCTGTGGAATGCTCCATTGGGCGGGGAGTCCGAGGTGT
TAAACAAGTCTGATTCATCCGCGGTGGGACGGGATAATGGAGATGCGAAA
AACTGGATATCTCAAGCATCTGCTCTTCTACATGACGCACGAGTTGGCTT
TGATTGGATATAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0042025host cell nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000100KJC3_000100Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000100-T1KJC3_000100-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000100-T1.utr5p1KJC3_000100-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000100-T1.exon1KJC3_000100-T1.exon1Aspergillus niger KJC3exon
KJC3_000100-T1.exon2KJC3_000100-T1.exon2Aspergillus niger KJC3exon
KJC3_000100-T1.exon3KJC3_000100-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000100-T1.cdsKJC3_000100-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000100-T1.utr3p1KJC3_000100-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036236
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR007219
DBxrefInterPro:IPR013087
DBxrefInterPro:IPR001138
DBxrefPFAM:PF00172
DBxrefPFAM:PF00096
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JC15FsupercontigJC15F:209444..210953 +
Powered by Drupal