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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC16F:86055..87126- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000116-T1 ID=KJC3_000116-T1|Name=KJC3_000116-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1072bp|location=Sequence derived from alignment at JC16F:86055..87126- (Aspergillus niger KJC3)
GTTGTGGACAGGAGGTACATTTGCTGATTTGGAGCGGGGTAAGCTATCCC
CAGAGATCTATTTATATGCCTACCCAAGACCAAATTCCGATCATATTCCT
GATTCTCAGCGCAACTCCTTGATATCATTGAAATAAAAAAAAATAAAAAA
TCACGAGACCGGCATCGAGCAAAATGCCACGCAAGGAACGCAAAGCTGCG
AAACTGTGGTCGCTCCACCCTAAGCTCCATGATGATGTAGCGCAGGTATT
AGACGAAGAAGGGCTTCAAATAGATTTCTTGGACGCCGATGACGAGGCAA
CCAACATCAAGGACAGAGACACCAACGTTATGGGTCGATTTATCTGTTTA
AACGCCGGATGTAACTTCAGCGGTTGGTCGAGCAAGAAAGTCGCGATGAC
CATTCGCATGTACCCTCAGCAGCGATATAATGCACGAGTGTATCACCAAC
GATGCAGAAATTGCAAAGCAGTCGGCCGACTGGTCCTAGATACTGGAAGC
TATGTGGAAAGAGTGACTTATTGGCTCAAAAAGTGGAATGGAATTGAGGT
ACAGCCGCCTGACTTCTCTGGCCAGAGCAGAGGGCCGCACAACAGTGAAC
TGTGTGAGGGCTGTAAAGTTGGTCATTGTTCCAACTCAAATCAAGATTTA
GCCTTGGTGCTGGCAAGGTGAGCTGAGTGCCAACGGTTCTTACACAGTAA
CTAATAACTCCAGCTTATCCATCTGAGCGCTGCCCTATAACGCACATATT
CTTGGCTCGCAAGCTATCCAGACCGAGTAAGCGAAGCTAAGGGATGAACA
CACAAAGATCGAAAATGCAAATCTGTTGATCAGTAGCTTTGTTTTCCTCC
TTCATTCTTGGTCTTGTGGTGTATGATGCTCAGCAAGAGACAAGGCCGAT
ATGCTTAAGACAGTCATTATCTTCTTTCTTTCTAGTTAAGTTATTCTTGC
GCTACCTTCGCCTTTTGCTTTGTAGTAATTCCATTCCTGCTGTATATCAT
ATGAATAATAATACTACGCTGCCGGGAATTGATGTTTCTAGCCTTTTTGT
ACGATAAGTGGGTTGGTTGACA back to topCoding sequence (CDS) from alignment at JC16F:86055..87126- >KJC3_000116-T1 ID=KJC3_000116-T1|Name=KJC3_000116-T1|organism=Aspergillus niger KJC3|type=CDS|length=1014bp|location=Sequence derived from alignment at JC16F:86055..87126- (Aspergillus niger KJC3)
CTTATCCATCTGAATGCCACGCAAGGAACGCAAAGCTGCGAAACTGTGGT
CGCTCCACCCTAAGCTCCATGATGATGTAGCGCAGGTATTAGACGAAGAA
GGGCTTCAAATAGATTTCTTGGACGCCGATGACGAGGCAACCAACATCAA
GGACAGAGACACCAACGTTATGGGTCGATTTATCTGTTTAAACGCCGGAT
GTAACTTCAGCGGTTGGTCGAGCAAGAAAGTCGCGATGACCATTCGCATG
TACCCTCAGCAGCGATATAATGCACGAGTGTATCACCAACGATGCAGAAA
TTGCAAAGCAGTCGGCCGACTGGTCCTAGATACTGGAAGCTATGTGGAAA
GAGTGACTTATTGGCTCAAAAAGTGGAATGGAATTGAGGTACAGCCGCCT
GACTTCTCTGGCCAGAGCAGAGGGCCGCACAACAGTGAACTGTGTGAGGG
CTGTAAAGTTGGTCATTGTTCCAACTCAAATCAAGATTTAGCCTTGGTGC
TGGCAAGCTTATCCATCTGAATGCCACGCAAGGAACGCAAAGCTGCGAAA
CTGTGGTCGCTCCACCCTAAGCTCCATGATGATGTAGCGCAGGTATTAGA
CGAAGAAGGGCTTCAAATAGATTTCTTGGACGCCGATGACGAGGCAACCA
ACATCAAGGACAGAGACACCAACGTTATGGGTCGATTTATCTGTTTAAAC
GCCGGATGTAACTTCAGCGGTTGGTCGAGCAAGAAAGTCGCGATGACCAT
TCGCATGTACCCTCAGCAGCGATATAATGCACGAGTGTATCACCAACGAT
GCAGAAATTGCAAAGCAGTCGGCCGACTGGTCCTAGATACTGGAAGCTAT
GTGGAAAGAGTGACTTATTGGCTCAAAAAGTGGAATGGAATTGAGGTACA
GCCGCCTGACTTCTCTGGCCAGAGCAGAGGGCCGCACAACAGTGAACTGT
GTGAGGGCTGTAAAGTTGGTCATTGTTCCAACTCAAATCAAGATTTAGCC
TTGGTGCTGGCAAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000116-T1.utr3p1 | KJC3_000116-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000116-T1.utr5p1 | KJC3_000116-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027377 |
| DBxref | PFAM:PF13695 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| JC16F | supercontig | JC16F:86055..87126 - |
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