You are here

Home

KJC3_000124-T1, KJC3_000124-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000124-T1
Unique NameKJC3_000124-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at JC16F:135205..136061+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000124-T1 ID=KJC3_000124-T1|Name=KJC3_000124-T1|organism=Aspergillus niger KJC3|type=mRNA|length=857bp|location=Sequence derived from alignment at JC16F:135205..136061+ (Aspergillus niger KJC3)
CAGGGTAACTCGGGGGCTCATCTTCTGTAGATAATTATCAAACAATAGAG
GGACGCACGCCTAAAATAAAGTGAGTTCTGGAAAAATTGAAGGAGCTGTA
TTTAGAGGAGTTTGCACTCTACTCTATGTTCTGCTTTGCAAGGCAATGCC
ACATAAGAATAAGGAATATTATGCTGTTCTTACTGGACGGATTGATGAGC
CGACGATATTTTCATCGTGGTATATCTGTCCGGATGTCATAACTAGGGGG
GGCTTGCTTAATAACTTCTACAGGGGCGATGTACACCCTCGCGTGACTGG
ATGCCGTTCAAAACTCAAGGCCTTCGACGATCTTCTAGAAGCACAAGACT
TCGTGGAGAAAAATGGAGTCAAGCAGCCTAAATTGGTAATCAAGAAAGGG
GCCGGAGAAACTACACCATTACTAGGAAATGAAGCCTTTTACGCAGTTGC
CAATGGTAGGAACCCAGGAATTTACCCCTACTATCAGTAAGCTGACTCAG
TACGCAATGGTAAAACGAAAACTACTCACAAATAAAATCAGTGGAAAAAC
GAAGCCAGAGGTTCATGGATTCTCAGGGGCTTGTCATAAGCACTTTAGAA
CACATTCACAGGCAGAAGCTTTTATTGAAGATTGGAGAAACTCCTATGCT
GACGTTTGCCGGAGGGAGATAAAAGCAAAGCTAGATCAGGGATCCAGGCC
ACCAAATATGGGATTGAGGGGTATCTTGCAAGCAAATTCTGAATACGATA
TAAGCGAAGATATTACAAAGATGACCGAGAAGCTGATTTTGAAGGGTGAA
TAGTGGGAGCATTCATTCATGCATTTATCTCGATTCTTCGCAATCAATCT
CAGTCAC
back to top

Coding sequence (CDS) from alignment at JC16F:135205..136061+

>KJC3_000124-T1 ID=KJC3_000124-T1|Name=KJC3_000124-T1|organism=Aspergillus niger KJC3|type=CDS|length=1647bp|location=Sequence derived from alignment at JC16F:135205..136061+ (Aspergillus niger KJC3)
ATGCCACATAAGAATAAGGAATATTATGCTGTTCTTACTGGACGGATTGA
TGAGCCGACGATATTTTCATCGTGGGGCGATGTACACCCTCGCGTGACTG
GATGCCGTTCAAAACTCAAGGCCTTCGACGATCTTCTAGAAGCACAAGAC
TTCGTGGAGAAAAATGGAGTCAAGCAGCCTAAATTGGTAATCAAGAAAGG
GGCCGGAGAAACTACACCATTACTAGGAAATGAAGCCTTTTACGCAGTTG
CCAATGGTAGGAACCCAGGAATTTACCCCTACTATCATGGAAAAACGAAG
CCAGAGGTTCATGGATTCTCAGGGGCTTGTCATAAGCACTTTAGAACACA
TTCACAGGCAGAAGCTTTTATTGAAGATTGGAGAAACTCCTATGCTGACG
TTTGCCGGAGGGAGATAAAAGCAAAGCTAGATCAGGGATCCAGGCCACCA
AATATGGGATTGAGGGGTATCTTGCAAGCAAATTCTGAATACGATATAAG
CGAAGATATTACAAAGATGACCGAGAAGCTGATTTTGAAGGGTGAATAGA
TGCCACATAAGAATAAGGAATATTATGCTGTTCTTACTGGACGGATTGAT
GAGCCGACGATATTTTCATCGTGGGGCGATGTACACCCTCGCGTGACTGG
ATGCCGTTCAAAACTCAAGGCCTTCGACGATCTTCTAGAAGCACAAGACT
TCGTGGAGAAAAATGGAGTCAAGCAGCCTAAATTGGTAATCAAGAAAGGG
GCCGGAGAAACTACACCATTACTAGGAAATGAAGCCTTTTACGCAGTTGC
CAATGGTAGGAACCCAGGAATTTACCCCTACTATCATGGAAAAACGAAGC
CAGAGGTTCATGGATTCTCAGGGGCTTGTCATAAGCACTTTAGAACACAT
TCACAGGCAGAAGCTTTTATTGAAGATTGGAGAAACTCCTATGCTGACGT
TTGCCGGAGGGAGATAAAAGCAAAGCTAGATCAGGGATCCAGGCCACCAA
ATATGGGATTGAGGGGTATCTTGCAAGCAAATTCTGAATACGATATAAGC
GAAGATATTACAAAGATGACCGAGAAGCTGATTTTGAAGGGTGAATAGAT
GCCACATAAGAATAAGGAATATTATGCTGTTCTTACTGGACGGATTGATG
AGCCGACGATATTTTCATCGTGGGGCGATGTACACCCTCGCGTGACTGGA
TGCCGTTCAAAACTCAAGGCCTTCGACGATCTTCTAGAAGCACAAGACTT
CGTGGAGAAAAATGGAGTCAAGCAGCCTAAATTGGTAATCAAGAAAGGGG
CCGGAGAAACTACACCATTACTAGGAAATGAAGCCTTTTACGCAGTTGCC
AATGGTAGGAACCCAGGAATTTACCCCTACTATCATGGAAAAACGAAGCC
AGAGGTTCATGGATTCTCAGGGGCTTGTCATAAGCACTTTAGAACACATT
CACAGGCAGAAGCTTTTATTGAAGATTGGAGAAACTCCTATGCTGACGTT
TGCCGGAGGGAGATAAAAGCAAAGCTAGATCAGGGATCCAGGCCACCAAA
TATGGGATTGAGGGGTATCTTGCAAGCAAATTCTGAATACGATATAAGCG
AAGATATTACAAAGATGACCGAGAAGCTGATTTTGAAGGGTGAATAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000124KJC3_000124Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000124-T1KJC3_000124-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000124-T1.utr5p1KJC3_000124-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000124-T1.exon1KJC3_000124-T1.exon1Aspergillus niger KJC3exon
KJC3_000124-T1.exon2KJC3_000124-T1.exon2Aspergillus niger KJC3exon
KJC3_000124-T1.exon3KJC3_000124-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000124-T1.cdsKJC3_000124-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000124-T1.utr3p1KJC3_000124-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR009027
DBxrefInterPro:IPR011320
DBxrefInterPro:IPR037056
DBxrefPFAM:PF01693
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JC16FsupercontigJC16F:135205..136061 +
Powered by Drupal