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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:127708..128643- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000170-T2 ID=KJC3_000170-T2|Name=KJC3_000170-T2|organism=Aspergillus niger KJC3|type=mRNA|length=936bp|location=Sequence derived from alignment at ch1:127708..128643- (Aspergillus niger KJC3)
TTCGTTATATATACTCCTGGCCAGATTAGGCTTACAGATATTTAGGTCCA
ATTTGCCATTAGGGGGGCATAGCGTCGAACCCTCCTTCATCGCACCTTTA
GAGTGCTCTCGAACAAAAAAGAGAGAAATTTATCGCCATGCCACCCTCTG
GATTATTCGGACGTCTGATCCAAAATAAACGCAGAGTACTCTGGGAGAAG
AAAGAGGGGGTGGATGCCACGCTCATTGTGTCCAATGTGAAGTTTGAGGT
TCATAGCATGATTCTAGGAGCGGAAAGTCCTATACTACAGTCACGCTTTC
AGGCAAGTCTTCGCAAATCAGGGCTACGGGAGATCACCATCGATGAAGCG
GATATACACACGGTGTGGAGAACTTTGATGCTTATATACCTCGGGCACTA
CTCCACAAGTTCATATCCAAAAGTTGCCACGCCAGGTGCGTTCATATCCT
CCTCTCACAGTGCTATACTAACGGGAAATGCAAGACACATTGCGAGGTGA
AGCTCTTCATGCATCGGTATATTTTTTATCTCAGCGCTGGGGCTTATCAC
GAAGTCTACAGAAGCTCGCTCTGCGAAATTGCACGGTTGAGAATCAAAGC
CACGGCAGATATATATAACCAGAGTGAAGGTTAGAGGTGTCAGATCCTCA
TTGACTTTTGTATATTATCTGATGCGAACCACTATCGCGTTCTCATTTTA
CTAGGGGTTATTATTCCGTTCCTGCTCCCCTGAACCATCAATAAATTCAA
CCGGAATGTCGTCGAGGTAAAACTCGGCCGAATGCTGTATAAGACACTGG
GAAAATAGAATCAAACAAAACTATACAGACAGCCGAACAGGCCCGCAACC
TGAGAGATGTCTCCTCGTTGGAGAAGATCCGCGTTATGACCCTCCCTACC
CTAAAGCCATGGATGTATACGGCTACTAGACCTACT back to topCoding sequence (CDS) from alignment at ch1:127708..128643- >KJC3_000170-T2 ID=KJC3_000170-T2|Name=KJC3_000170-T2|organism=Aspergillus niger KJC3|type=CDS|length=1017bp|location=Sequence derived from alignment at ch1:127708..128643- (Aspergillus niger KJC3)
AAGCTCGCTCTGCGAAATTGCACGGTTGAACACATTGCGAGATGCCACCC
TCTGGATTATTCGGACGTCTGATCCAAAATAAACGCAGAGTACTCTGGGA
GAAGAAAGAGGGGGTGGATGCCACGCTCATTGTGTCCAATGTGAAGTTTG
AGGTTCATAGCATGATTCTAGGAGCGGAAAGTCCTATACTACAGTCACGC
TTTCAGGCAAGTCTTCGCAAATCAGGGCTACGGGAGATCACCATCGATGA
AGCGGATATACACACGGTGTGGAGAACTTTGATGCTTATATACCTCGGGC
ACTACTCCACAAGTTCATATCCAAAAGTTGCCACGCCAGAAGCTCGCTCT
GCGAAATTGCACGGTTGAACACATTGCGAGATGCCACCCTCTGGATTATT
CGGACGTCTGATCCAAAATAAACGCAGAGTACTCTGGGAGAAGAAAGAGG
GGGTGGATGCCACGCTCATTGTGTCCAATGTGAAGTTTGAGGTTCATAGC
ATGATTCTAGGAGCGGAAAGTCCTATACTACAGTCACGCTTTCAGGCAAG
TCTTCGCAAATCAGGGCTACGGGAGATCACCATCGATGAAGCGGATATAC
ACACGGTGTGGAGAACTTTGATGCTTATATACCTCGGGCACTACTCCACA
AGTTCATATCCAAAAGTTGCCACGCCAGAAGCTCGCTCTGCGAAATTGCA
CGGTTGAACACATTGCGAGATGCCACCCTCTGGATTATTCGGACGTCTGA
TCCAAAATAAACGCAGAGTACTCTGGGAGAAGAAAGAGGGGGTGGATGCC
ACGCTCATTGTGTCCAATGTGAAGTTTGAGGTTCATAGCATGATTCTAGG
AGCGGAAAGTCCTATACTACAGTCACGCTTTCAGGCAAGTCTTCGCAAAT
CAGGGCTACGGGAGATCACCATCGATGAAGCGGATATACACACGGTGTGG
AGAACTTTGATGCTTATATACCTCGGGCACTACTCCACAAGTTCATATCC
AAAAGTTGCCACGCCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000170-T2.utr5p1 | KJC3_000170-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011333 |
| DBxref | InterPro:IPR000210 |
| DBxref | PFAM:PF00651 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:127708..128643 - |
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