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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:291882..293413+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000224-T1 ID=KJC3_000224-T1|Name=KJC3_000224-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1532bp|location=Sequence derived from alignment at ch1:291882..293413+ (Aspergillus niger KJC3)
GCCCCGAGCTCTGATCAAGGAATGATCCTTCACACGGCTTCCCTACCACT
CAGATCGGCCCCGCTACAAGTGTCGGATCAAAAATGATCTGCATGCTTAC
CATATGGTCTTCTCCGTCCGGACGAGTCGATACCTGTCCGGTCGGATCCG
AGTGCTGGTCCGGACAGAGCCTCGCAGCCGGCAGGGTATATAGGCCCTCT
GGCGCCATCAGCAATGAACTCCTCTCCATCAGCTACAACTGCAATCTGAT
TACAGTACACAAAACGAGCAAGGAAATTAACCAGAAAAAACAATAGACGA
TTCCCTCCAGATCCTTTCCTCTCGATACTACTCAACACAAACCCCTGCAA
TTCACAACATATCACCATGCGCGTTCTTGTGATTGGCGGAAGTGGACGGT
GTGGCAAGCTGGTCATCGATGACCTGCTGAGTCGTGGTAAGTGTCTCTCG
CATCAACCTGCATGTCATTGGTTGTATCGGCTAAATTGCTAACAATGAGA
TCCAGGCCACCAAGTTACGACGTTGGCCCGCAAGCCCGAATCTCTCGGTG
GAGCTCGTGCCGGGCTGAAGGTAGTCCAAGGTGAGTCTTAGTCGTAGTCT
TAGTGCCTCTTAGTCCTCGCAGTCCCTCTGGATATGCGCGAAGGAATATC
GACTCCAGATTGACTAACAGAAATCCATCAGGAACCCCCACCGAACTCGA
GGATGTCCGCGCCGCGTTCCAAGCCGACATTCCCGATGTGGTAATTGTGA
CCCTCAACGCCCCACGGGCCAGCGACAGCCCCTTTGCGGCGCCCATCTCA
CCCCCTCGGCTAATGACTGACTGCAACTCCAACGTGCTGGCGGCGATGAA
GGAGTTTGGGGTACGCAAAACGGTCATCCTGCAGGCGTTTGGGGTTGGGG
AATCGTGGGACAACATGCACTGCGTGCTGCGGCTGCTGATGAAGAAGTCC
AACATGTCGTATCAGTATGACGATCACAACGCGACGGCCAAGGCGGTGCA
GGCGAGTGGACTGGACTATGTGATGGTGCGACCGTCGCGGCTGGTGGAGA
CGCCCGATGCCAACCAGCCGGTCAAAGTGTGGCCGGATCATGGCAAGGGC
GTGCCCATGATGGCCAGCACCAGTCGCATCACGGTGGCCCGCTGGTTGGT
GGACGCCGCGGAGAGCAACAAATGGGATAACACGGCACCCGTGATCACCA
ACTAGAATCTTCCTCGATCTGTTCTACTACTGGGCACATCTCTTGCATCT
CACGAGGGCCGATCCGGGGCGGAGCGGGTTGGAAGCGGAGAATTTTGAGG
AGACGAACCGAGAGAAAGAACGACGATCCATCGGATCGACAGGGCAAATG
ATTGATGGACGGTTAATGTTTCTTTTTTTACATTTTTTTTTCTGTCTATG
GTTTCATCTTTTTCTGGGCATTTACACCTGGCATGGCGTGAACTTTGAAT
GTATGTTATCAGATGTCTTGGCCTCGTATTAATTGTGGCTTTTTTTTCTT
CAGCAAAATGCGATAAACTTTTTCCTTCTTCA back to topCoding sequence (CDS) from alignment at ch1:291882..293413+ >KJC3_000224-T1 ID=KJC3_000224-T1|Name=KJC3_000224-T1|organism=Aspergillus niger KJC3|type=CDS|length=2007bp|location=Sequence derived from alignment at ch1:291882..293413+ (Aspergillus niger KJC3)
ATGCGCGTTCTTGTGATTGGCGGAAGTGGACGGTGTGGCAAGCTGGTCAT
CGATGACCTGCTGAGTCGTGGCCACCAAGTTACGACGTTGGCCCGCAAGC
CCGAATCTCTCGGTGGAGCTCGTGCCGGGCTGAAGGTAGTCCAAGGAACC
CCCACCGAACTCGAGGATGTCCGCGCCGCGTTCCAAGCCGACATTCCCGA
TGTGGTAATTGTGACCCTCAACGCCCCACGGGCCAGCGACAGCCCCTTTG
CGGCGCCCATCTCACCCCCTCGGCTAATGACTGACTGCAACTCCAACGTG
CTGGCGGCGATGAAGGAGTTTGGGGTACGCAAAACGGTCATCCTGCAGGC
GTTTGGGGTTGGGGAATCGTGGGACAACATGCACTGCGTGCTGCGGCTGC
TGATGAAGAAGTCCAACATGTCGTATCAGTATGACGATCACAACGCGACG
GCCAAGGCGGTGCAGGCGAGTGGACTGGACTATGTGATGGTGCGACCGTC
GCGGCTGGTGGAGACGCCCGATGCCAACCAGCCGGTCAAAGTGTGGCCGG
ATCATGGCAAGGGCGTGCCCATGATGGCCAGCACCAGTCGCATCACGGTG
GCCCGCTGGTTGGTGGACGCCGCGGAGAGCAACAAATGGGATAACACGGC
ACCCGTGATCACCAACTAGATGCGCGTTCTTGTGATTGGCGGAAGTGGAC
GGTGTGGCAAGCTGGTCATCGATGACCTGCTGAGTCGTGGCCACCAAGTT
ACGACGTTGGCCCGCAAGCCCGAATCTCTCGGTGGAGCTCGTGCCGGGCT
GAAGGTAGTCCAAGGAACCCCCACCGAACTCGAGGATGTCCGCGCCGCGT
TCCAAGCCGACATTCCCGATGTGGTAATTGTGACCCTCAACGCCCCACGG
GCCAGCGACAGCCCCTTTGCGGCGCCCATCTCACCCCCTCGGCTAATGAC
TGACTGCAACTCCAACGTGCTGGCGGCGATGAAGGAGTTTGGGGTACGCA
AAACGGTCATCCTGCAGGCGTTTGGGGTTGGGGAATCGTGGGACAACATG
CACTGCGTGCTGCGGCTGCTGATGAAGAAGTCCAACATGTCGTATCAGTA
TGACGATCACAACGCGACGGCCAAGGCGGTGCAGGCGAGTGGACTGGACT
ATGTGATGGTGCGACCGTCGCGGCTGGTGGAGACGCCCGATGCCAACCAG
CCGGTCAAAGTGTGGCCGGATCATGGCAAGGGCGTGCCCATGATGGCCAG
CACCAGTCGCATCACGGTGGCCCGCTGGTTGGTGGACGCCGCGGAGAGCA
ACAAATGGGATAACACGGCACCCGTGATCACCAACTAGATGCGCGTTCTT
GTGATTGGCGGAAGTGGACGGTGTGGCAAGCTGGTCATCGATGACCTGCT
GAGTCGTGGCCACCAAGTTACGACGTTGGCCCGCAAGCCCGAATCTCTCG
GTGGAGCTCGTGCCGGGCTGAAGGTAGTCCAAGGAACCCCCACCGAACTC
GAGGATGTCCGCGCCGCGTTCCAAGCCGACATTCCCGATGTGGTAATTGT
GACCCTCAACGCCCCACGGGCCAGCGACAGCCCCTTTGCGGCGCCCATCT
CACCCCCTCGGCTAATGACTGACTGCAACTCCAACGTGCTGGCGGCGATG
AAGGAGTTTGGGGTACGCAAAACGGTCATCCTGCAGGCGTTTGGGGTTGG
GGAATCGTGGGACAACATGCACTGCGTGCTGCGGCTGCTGATGAAGAAGT
CCAACATGTCGTATCAGTATGACGATCACAACGCGACGGCCAAGGCGGTG
CAGGCGAGTGGACTGGACTATGTGATGGTGCGACCGTCGCGGCTGGTGGA
GACGCCCGATGCCAACCAGCCGGTCAAAGTGTGGCCGGATCATGGCAAGG
GCGTGCCCATGATGGCCAGCACCAGTCGCATCACGGTGGCCCGCTGGTTG
GTGGACGCCGCGGAGAGCAACAAATGGGATAACACGGCACCCGTGATCAC
CAACTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000224-T1.utr5p1 | KJC3_000224-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000224-T1.utr3p1 | KJC3_000224-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_1.1 |
| Note | SMCOG1199:NmrA family protein |
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR016040 |
| DBxref | PFAM:PF13460 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:291882..293413 + |
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