You are here

Home

KJC3_000233-T1, KJC3_000233-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000233-T1
Unique NameKJC3_000233-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:318072..319872+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000233-T1 ID=KJC3_000233-T1|Name=KJC3_000233-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1801bp|location=Sequence derived from alignment at ch1:318072..319872+ (Aspergillus niger KJC3)
TCAAAACTCACAATGGCTTGGTAAGTGCGGAGCGATGTGTAAGCGCGACC
GCTTTATTGGAGCGCTGATGTTGGCCTAAGATCTCACCCCTGCATCGAAG
TGGCCCACGGTGTCCTCCCCGTCGGAGACACGCGACGATGGCATGATTTG
AGGCAGATACAATAGCATGCTTTTCATTGTGCATCAAGAAAAAAATTGCC
GGATCCTCAGCGGTTGCAGTCACAGAAGATCGACAAAGAAGACCAATTGC
AGAAGTTGATCTCTTAATCAGACAGGTTCGTCGCACCGCGGGGCTAGTAT
GGTGTTGGGGCTGACAGCCTCGGATGGAGACAGCGAGCTGAGGCCAAGAC
GATCCATCGATCCAGTGGTTCCCACGAGGACCCAATGCAGTGTAACCATG
CACAACAATGGCCCCTCTGTTCTGGTCAATGCATTCCAGACCCCTCCCAT
CTGTCTTTTGCCTCCTGCTCATGGAACGGCCACCAACACCGGGCGCAAGT
CTAAACCAACGCGATAACGAACGGCTGCAACCTGGCCGTTTTTGTAACCG
GTCTAGATAGACCATGTGCGCTATCCTCAACACTAAAACAGACTTTATGC
CGGCTGACACCCCCACTGCTAGGCAAAATTTAGTGCAATCCAATTGTCAC
AGTGGCTTCAGAAAAACCGAGGCCATCATTATAGGCCACGTCTCCTGAGA
AGCGGAGACTGACAAGAGTCTAGCCTGGGGCAGAGGATATATAGCCTGGC
TACTTACCCCCGTCGGCTTTTCACTCAACATCCCTACACATACATACCCA
GCATACCACTACACACACCACAATGGGCGACGCTGCAGGACTCCCCGACT
ACGTTCTGGACCCCAATGCGGTCCTCAACGACACGGACGCCGCCTGGCGT
CACGGAGGCCCCCCGGACTACAGCAAGACCCGGGCCTACTACGAAGAGAG
TACGCCTCCTACCGCATCCACGCAACCACCCCAGATCAGTACTAACAATG
AATACCAACAGCCAAGAAAATGACCCACGAAGCCGGCAGCCTTCCCTTCC
TCGTCGAGAACCTGGTTAAGAACTGGGAAATCGAAGCCTCCTTCAAGACC
AACCTCGCGGACTGGCGCACCATCGACCACGAGACATACCACTTCACATT
GAACGGCGGGCCCCCGTTGAGCGGCGAGCACATGCTGAAAGTCGGCACGT
ATAATGCGCTCCTTACGCCGAGTGCGTACTACGATCCTGCCAATAATGAT
TTCGAAGCGAGCCACAAGTCGTTTAAGCGCATGATGCCTACGTTTGCGTG
GGAGGTGCTGGAGGTATATAGTGGGCCGCCGGTCGTGGTGTTTAAGTGGA
GGCATTGGGGTGTTATGGCGAGGGATTATGTTGGATTTAACGAGTATGTC
TATACCTCTCCCTTTGATGATCTCGGTGTGGATGTGGGCTAATAATGGTA
TAGTAAGGGAGAAAAGGTCAAGATCGCCGCGCACGGCGGACCCATTGATA
TCCAAGGTATCGTGATCGCTAAGGTTAATGATGCGCTGAAGCTGCAGCGC
ATTGACGTGTGGTTCGACCCCCTGGAGATGTTCCGCCAGATTGCCAAGGA
TCACGAGCAGACCAAGGTGGAGGGCGAGGAGAAGACTGCCTCGGGGTGTC
CGTTTGCGGGGGCAAAGGAGTAGATGGGATGTATGATGTAAATCTGAGCA
TATGTTAGGATACGAATTTCTTTACGGATTGATTCTGGTCATCAGTCTGA
TAATACGTAATGCTTCGTAGGATAGTCTCACATATTTAACTTGGATACTG
G
back to top

Coding sequence (CDS) from alignment at ch1:318072..319872+

>KJC3_000233-T1 ID=KJC3_000233-T1|Name=KJC3_000233-T1|organism=Aspergillus niger KJC3|type=CDS|length=2187bp|location=Sequence derived from alignment at ch1:318072..319872+ (Aspergillus niger KJC3)
ATGGGCGACGCTGCAGGACTCCCCGACTACGTTCTGGACCCCAATGCGGT
CCTCAACGACACGGACGCCGCCTGGCGTCACGGAGGCCCCCCGGACTACA
GCAAGACCCGGGCCTACTACGAAGAGACCAAGAAAATGACCCACGAAGCC
GGCAGCCTTCCCTTCCTCGTCGAGAACCTGGTTAAGAACTGGGAAATCGA
AGCCTCCTTCAAGACCAACCTCGCGGACTGGCGCACCATCGACCACGAGA
CATACCACTTCACATTGAACGGCGGGCCCCCGTTGAGCGGCGAGCACATG
CTGAAAGTCGGCACGTATAATGCGCTCCTTACGCCGAGTGCGTACTACGA
TCCTGCCAATAATGATTTCGAAGCGAGCCACAAGTCGTTTAAGCGCATGA
TGCCTACGTTTGCGTGGGAGGTGCTGGAGGTATATAGTGGGCCGCCGGTC
GTGGTGTTTAAGTGGAGGCATTGGGGTGTTATGGCGAGGGATTATGTTGG
ATTTAACGATAAGGGAGAAAAGGTCAAGATCGCCGCGCACGGCGGACCCA
TTGATATCCAAGGTATCGTGATCGCTAAGGTTAATGATGCGCTGAAGCTG
CAGCGCATTGACGTGTGGTTCGACCCCCTGGAGATGTTCCGCCAGATTGC
CAAGGATCACGAGCAGACCAAGGTGGAGGGCGAGGAGAAGACTGCCTCGG
GGTGTCCGTTTGCGGGGGCAAAGGAGTAGATGGGCGACGCTGCAGGACTC
CCCGACTACGTTCTGGACCCCAATGCGGTCCTCAACGACACGGACGCCGC
CTGGCGTCACGGAGGCCCCCCGGACTACAGCAAGACCCGGGCCTACTACG
AAGAGACCAAGAAAATGACCCACGAAGCCGGCAGCCTTCCCTTCCTCGTC
GAGAACCTGGTTAAGAACTGGGAAATCGAAGCCTCCTTCAAGACCAACCT
CGCGGACTGGCGCACCATCGACCACGAGACATACCACTTCACATTGAACG
GCGGGCCCCCGTTGAGCGGCGAGCACATGCTGAAAGTCGGCACGTATAAT
GCGCTCCTTACGCCGAGTGCGTACTACGATCCTGCCAATAATGATTTCGA
AGCGAGCCACAAGTCGTTTAAGCGCATGATGCCTACGTTTGCGTGGGAGG
TGCTGGAGGTATATAGTGGGCCGCCGGTCGTGGTGTTTAAGTGGAGGCAT
TGGGGTGTTATGGCGAGGGATTATGTTGGATTTAACGATAAGGGAGAAAA
GGTCAAGATCGCCGCGCACGGCGGACCCATTGATATCCAAGGTATCGTGA
TCGCTAAGGTTAATGATGCGCTGAAGCTGCAGCGCATTGACGTGTGGTTC
GACCCCCTGGAGATGTTCCGCCAGATTGCCAAGGATCACGAGCAGACCAA
GGTGGAGGGCGAGGAGAAGACTGCCTCGGGGTGTCCGTTTGCGGGGGCAA
AGGAGTAGATGGGCGACGCTGCAGGACTCCCCGACTACGTTCTGGACCCC
AATGCGGTCCTCAACGACACGGACGCCGCCTGGCGTCACGGAGGCCCCCC
GGACTACAGCAAGACCCGGGCCTACTACGAAGAGACCAAGAAAATGACCC
ACGAAGCCGGCAGCCTTCCCTTCCTCGTCGAGAACCTGGTTAAGAACTGG
GAAATCGAAGCCTCCTTCAAGACCAACCTCGCGGACTGGCGCACCATCGA
CCACGAGACATACCACTTCACATTGAACGGCGGGCCCCCGTTGAGCGGCG
AGCACATGCTGAAAGTCGGCACGTATAATGCGCTCCTTACGCCGAGTGCG
TACTACGATCCTGCCAATAATGATTTCGAAGCGAGCCACAAGTCGTTTAA
GCGCATGATGCCTACGTTTGCGTGGGAGGTGCTGGAGGTATATAGTGGGC
CGCCGGTCGTGGTGTTTAAGTGGAGGCATTGGGGTGTTATGGCGAGGGAT
TATGTTGGATTTAACGATAAGGGAGAAAAGGTCAAGATCGCCGCGCACGG
CGGACCCATTGATATCCAAGGTATCGTGATCGCTAAGGTTAATGATGCGC
TGAAGCTGCAGCGCATTGACGTGTGGTTCGACCCCCTGGAGATGTTCCGC
CAGATTGCCAAGGATCACGAGCAGACCAAGGTGGAGGGCGAGGAGAAGAC
TGCCTCGGGGTGTCCGTTTGCGGGGGCAAAGGAGTAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000233KJC3_000233Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000233-T1KJC3_000233-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000233-T1.utr5p1KJC3_000233-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_000233-T1.utr5p2KJC3_000233-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_000233-T1.utr5p3KJC3_000233-T1.utr5p3Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000233-T1.exon1KJC3_000233-T1.exon1Aspergillus niger KJC3exon
KJC3_000233-T1.exon2KJC3_000233-T1.exon2Aspergillus niger KJC3exon
KJC3_000233-T1.exon3KJC3_000233-T1.exon3Aspergillus niger KJC3exon
KJC3_000233-T1.exon4KJC3_000233-T1.exon4Aspergillus niger KJC3exon
KJC3_000233-T1.exon5KJC3_000233-T1.exon5Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000233-T1.cdsKJC3_000233-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000233-T1.utr3p1KJC3_000233-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR032710
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:318072..319872 +
Powered by Drupal