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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:351915..353880+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000245-T1 ID=KJC3_000245-T1|Name=KJC3_000245-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1966bp|location=Sequence derived from alignment at ch1:351915..353880+ (Aspergillus niger KJC3)
TTCCCTCCTTCTTCAGCCCCCATCCGTCCATTCATTCTTTCGAACCGCCT
GCGGACTCCGATCCTTCCTTTCGTTCTATTTTCGACCTTTGTATCATGCG
TCAATACTCGCGCGCCGCTGCGGCCGCCGTTGCTCTGGCAGCATCGGCCC
GCGCTGCCAATTCCTCTTCCCTTACTTCCCTCTGTACCGTCTCTCATGTG
CAGTCGGCTCTCCCTGCCAATGGCACTCTGCTCGGTATTGATCTAATCCC
TTCGTCCGTGACGGCGAAGACCACCACCGAAGACTCGACTGAGTACTGTG
CTGTGTCTGTCTCTTACGTCCACACGGGCACCACCAACGAGATCGTTCTG
AACTACGGCTTCCCTAGCCCTGCCGACTTCAAGAACCGCTTCTATGTGGC
AGGTGGCTTTGGTTATTCCCTGAGCACCTCCTCTACGGGTGGTCTCGAGT
ATGGCGCTGTCGGAGGTGCTACCGATGCTGGCTATGGTGCTTTGAACGGC
ACTACCGTGGACGAGGTCAACCTCTCCGGCAACGGCACTATCAACTGGGA
TCCCATCTTCATGTTCGCCTACCAGGCCCTGGGCGAGATGACCACTGTCG
GAAAGCCTCTCACCCGCGCCTTCTATGGTTTGGACGATGATGCCAAGGTT
TACACCTACTACGAGGGTTGCTCTGACGGTGGCCGTCAGGGTATGAGTCA
GATCCAGCGCTACGGTGACGAGTACGATGGTGCCATTATTGGTGCCCCTG
CTTTCCGTTACGGCCAGCAGCAGGTCAACCACCTGTTCTCCAGTGTGGTT
GAGCAGACCCTCGATTACTACCCCCCTACCTGCGAGTTGGAAAAGATTGT
TAATGCCACCATCGCTGCCTGCGATCCCCTTGATGGACGCACCGACGGCG
TCATCTCTCGTACTGATCTCTGCCAGCTCGACTTCAACCTGACTTCCATT
ATCGGCGAACCCTACCACTGTGCTGCCGAAGTCAGTACTTCTCTCGGTTT
CAACTTTAACAAGCGCAGCGACGGCACCTCAACCTCCTACACCCCGGCCC
AGAACGGAAATGTTACTGCAGAAGGTGTTGCCGTGGCTCAGACTATCTAC
GATGGTCTGTTCAACACTGCCGGTGAACGTGCCTACCTGTCCTACCGTAT
CGGGTCCGAGTTCTCGGATGGCGAGACCGCCTACGACAACAGCACCGGCA
CCTGGGGTGTGGATATCCCCTCTACTGGTGGTGAATTTGTTACTCGTTTC
ATTGAACTCGTTGAACTCAGCAACCTCGAGACCCTCAGCAATGTGACCTA
CGATACCCTTGTGGACTGGATGAACAAGGCCATGGTCCGCTACATGGATA
CTCTGCAAACCACCCTCCCCGACCTGACGACCTTCAAGTCCACCGGCGGT
AAAGTCATCCACTACCACGGTGAGAACGACCCCAGTGTGCCTACTGCTTC
TTCTGTGCACTACTGGCAATCCGTCATGAGCATCATGTACCCCAAGCTCG
GATCCTCCAAGGCCATCGAGCAGATGAAGGAATGGTATCAGCTGTACCTG
GTCCCCGGTGCTGCTCACTGCGGTCGCAACACTCTCCAGCCCAACGGTCC
CTTCCCTGAAGATAACATGGCCACCATGATCAAGTGGGTCGAGCAGGGTG
TCCAGCCCACCGGTTTGAATGCTACCGTCGATGCTGGCAAGTACGACGGC
GAGGTTCAGTCCCTGTGCCAGTTCCCCAAGCGTCCTGTCTGGAAGAGCAA
CAAGTGGGAGTGTGAGTCCGATGACGAGGGTGCTGACACTTTCTACTACA
CTTTCCCCGCCTTCAAGGTGCCCATCTACTAAGCGTATAAGTCACTGGTG
AATTCTTGCTGTATATTATTCAGGAGGCGGTAGGTGAAAGGGGACGTTGA
GAAAGCGCTTTGTATGTAGTATATACATTTAGACGAAGATTATTTTTTTT
TAATAAACATTGGTCC back to topCoding sequence (CDS) from alignment at ch1:351915..353880+ >KJC3_000245-T1 ID=KJC3_000245-T1|Name=KJC3_000245-T1|organism=Aspergillus niger KJC3|type=CDS|length=1737bp|location=Sequence derived from alignment at ch1:351915..353880+ (Aspergillus niger KJC3)
ATGCGTCAATACTCGCGCGCCGCTGCGGCCGCCGTTGCTCTGGCAGCATC
GGCCCGCGCTGCCAATTCCTCTTCCCTTACTTCCCTCTGTACCGTCTCTC
ATGTGCAGTCGGCTCTCCCTGCCAATGGCACTCTGCTCGGTATTGATCTA
ATCCCTTCGTCCGTGACGGCGAAGACCACCACCGAAGACTCGACTGAGTA
CTGTGCTGTGTCTGTCTCTTACGTCCACACGGGCACCACCAACGAGATCG
TTCTGAACTACGGCTTCCCTAGCCCTGCCGACTTCAAGAACCGCTTCTAT
GTGGCAGGTGGCTTTGGTTATTCCCTGAGCACCTCCTCTACGGGTGGTCT
CGAGTATGGCGCTGTCGGAGGTGCTACCGATGCTGGCTATGGTGCTTTGA
ACGGCACTACCGTGGACGAGGTCAACCTCTCCGGCAACGGCACTATCAAC
TGGGATCCCATCTTCATGTTCGCCTACCAGGCCCTGGGCGAGATGACCAC
TGTCGGAAAGCCTCTCACCCGCGCCTTCTATGGTTTGGACGATGATGCCA
AGGTTTACACCTACTACGAGGGTTGCTCTGACGGTGGCCGTCAGGGTATG
AGTCAGATCCAGCGCTACGGTGACGAGTACGATGGTGCCATTATTGGTGC
CCCTGCTTTCCGTTACGGCCAGCAGCAGGTCAACCACCTGTTCTCCAGTG
TGGTTGAGCAGACCCTCGATTACTACCCCCCTACCTGCGAGTTGGAAAAG
ATTGTTAATGCCACCATCGCTGCCTGCGATCCCCTTGATGGACGCACCGA
CGGCGTCATCTCTCGTACTGATCTCTGCCAGCTCGACTTCAACCTGACTT
CCATTATCGGCGAACCCTACCACTGTGCTGCCGAAGTCAGTACTTCTCTC
GGTTTCAACTTTAACAAGCGCAGCGACGGCACCTCAACCTCCTACACCCC
GGCCCAGAACGGAAATGTTACTGCAGAAGGTGTTGCCGTGGCTCAGACTA
TCTACGATGGTCTGTTCAACACTGCCGGTGAACGTGCCTACCTGTCCTAC
CGTATCGGGTCCGAGTTCTCGGATGGCGAGACCGCCTACGACAACAGCAC
CGGCACCTGGGGTGTGGATATCCCCTCTACTGGTGGTGAATTTGTTACTC
GTTTCATTGAACTCGTTGAACTCAGCAACCTCGAGACCCTCAGCAATGTG
ACCTACGATACCCTTGTGGACTGGATGAACAAGGCCATGGTCCGCTACAT
GGATACTCTGCAAACCACCCTCCCCGACCTGACGACCTTCAAGTCCACCG
GCGGTAAAGTCATCCACTACCACGGTGAGAACGACCCCAGTGTGCCTACT
GCTTCTTCTGTGCACTACTGGCAATCCGTCATGAGCATCATGTACCCCAA
GCTCGGATCCTCCAAGGCCATCGAGCAGATGAAGGAATGGTATCAGCTGT
ACCTGGTCCCCGGTGCTGCTCACTGCGGTCGCAACACTCTCCAGCCCAAC
GGTCCCTTCCCTGAAGATAACATGGCCACCATGATCAAGTGGGTCGAGCA
GGGTGTCCAGCCCACCGGTTTGAATGCTACCGTCGATGCTGGCAAGTACG
ACGGCGAGGTTCAGTCCCTGTGCCAGTTCCCCAAGCGTCCTGTCTGGAAG
AGCAACAAGTGGGAGTGTGAGTCCGATGACGAGGGTGCTGACACTTTCTA
CTACACTTTCCCCGCCTTCAAGGTGCCCATCTACTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000245-T1.utr5p1 | KJC3_000245-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000245-T1.utr3p1 | KJC3_000245-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR029058 |
| DBxref | InterPro:IPR011118 |
| DBxref | PFAM:PF07519 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:351915..353880 + |
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