You are here

Home

KJC3_000267-T1, KJC3_000267-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000267-T1
Unique NameKJC3_000267-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:401847..404384-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000267-T1 ID=KJC3_000267-T1|Name=KJC3_000267-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2538bp|location=Sequence derived from alignment at ch1:401847..404384- (Aspergillus niger KJC3)
GGAGACGTGTTCCCTCAGTTTTTCGTCCTGGATGTTCGTGGCCTCTTAGT
CTAGACTATTCTAGCACTTGAACGTGTTCGTGGCCGTCTACGTAGCGACT
AGAGAGTCGAACCCCTCCCGATACGTAGAGGGATCAGCATCTCGCCGGGG
ATAACATCATTTGCTCGGCGCTTCTCCTCTTTTCTGGTGGGTCAACGCCC
CCTTTAGTCGGAAATCTTTCTTCTTCTTGCTCTTCCCGCCAAATTTTTTA
GTTCTTTTTCCCCGGCCAAAGTCGTGCCAACGTCTTGTCTGGCATTTTTC
AGGCCCGTCAGTTGTCATTCGGCCGCTTCCTTTTCCCTTGCCACAGCATG
TAAGTGCCGTTCCGTGGTACGCTTTCCGAAAGTTCAGGCACAGCCAGGAA
CAATTCAAAAAACTGAGACAAACCTTCAAGGATTATCTCGTGATTATTGT
CATTAGTATGCCTACGGCTCAGCATGTCCAGCCCAGTTGACGATTCCAAT
ACCCATCTGGGTCCTCCTCGACGCGACACCGACCCCTCCAGTGATGACGA
CCGTCTGGGTAACCGATCGACCAACAATGACGAACGACCGTTGACCCGCG
AAAACCCTCCTCCGCCCTCCGGGGGTAACCAGTGGGGCGTGCTCTTCAAA
GCCATCCGCGATGGCACTTCACAACTCGCGGAAAAACTTGGTCGTGATCC
TGACGGCGGTGATGGACTGGATTCGGCCTGGCACCCTGAAGATTACGGAT
TCCAAGAGGACATTGAGATGAGAGAGATGCTCGCACAGGAGGAACTCGAG
GAGCATGCCTACGCTTCCAAGCTGCAGTCCGTGCTGGGTTCCGATGCCAA
CAATCTCGTGAAGAACCTGGGCTTGGGTGAAACTCCGTCGCGGACCAACA
GTAATGATGAGAACCTCGTCGGAGGTGTACTCTGGCATTTACTCAGTCAT
CAGATGGGCCATAACCCGGAGGAAATCCATGACGATGGTGCGGTGCCCAC
ATCTACAGAAGACGGACTGGCGCCGTTACCCACTGACCTGCGGAAGCGTC
GCAAGAAGAAGTGGTACGACGAGGATCCAACGAATGACAAAGAAGGTCGG
AAGAAAATGAAGGAAGAGCTGTTGACACAGAAGATTGGTTCGCTTCTCAC
CCGCCAGCGCTATATGATCCAGCTGTGTCGGGCATTGATGAAATTCGGCG
CTCCGACGCATCGTCTCGAAGAATACATGCAGATGACGGCTTACCGACTG
CGGGTACATGGCCAATTCATGTACATTCCCGGCTGCATGATTATCTCGTT
TGACGATCCCCTTACCCGCACTGCGGAGGTCAAGCTGGTCCGCACAACCC
ACGGATTGGACCTCGGTCGGCTCGGTGATATTCACAATTGCTATAAGAAT
GTGCTTCATGGCCGACTGTCGCCGGATGAGGCTCTTCCGGTCATGGACGA
TCTTCTTACCCGAAAGAGTCGCATTCATCAGGCCTGGTTGTTGGTTTTGC
TGTCCGGCCTGGCGAGTGTGGCGGTGGGTCCGTGGGCGTTCAGCGCGCGC
CCGGTCGACATGCCCATTATCTTCGTCCTGGGCTGTCTCCTCGGAACATT
GCAGTATGTGCTGGCACCACGATCGGCGCTGTACTCCAATGTGTTCGAAG
TCACCGTGGCCATGCTCACGTCGTTCTTGGCTCGTGCATTTGGAAGCATT
TACTACTCGAGCGGCGAGCCTGTTTTCTGTTTCTCCGCCCTGGCAGAATC
ATCCATCGCGCTCATTCTACCGGGATACTCTGTGCTGTGTAGCAGTCTGG
AATTGCAATCGCATCAGATCGTGGCAGGATCCATCCGATTGGTCTATACC
ATTATTTACTCGCTTTTTCTTGGCTACGGCGTGACAGTCGGTCTCACGAT
TTACGGACTGATGGACGACAATGCGACCAAAGCCACATCCTGCCCTTCAC
GAGATACCAACATCTATGGTAGCGTGTACGTGCAGGAGTTTGTGTTTGTG
GCCGTCTACTGCGCCTTTGCCGCCATCCTCAACCAAGCCAAATGGAAGCA
GCTGCCGATCATGTCCTTCATGGGCGTCGCAGGCTACACAACCTACTACT
TCACAGCCAACCACTTGGACAGTCGGTTCGGCAGTACCATTGGAGCTTTC
ACGATCGGATTGTGTGCCAACTTGTACAGTCGAGTCTGGCATGGACACGC
TGCTGCGGCCATCGTGCCGGGTATGTGGACGCTGGTTTCGTCTGGTTTGG
CTAGTAGTGGATCCATCATCTCGGGACTGGCGTACGCAGAAGCAGTAAAA
AATAACACTGTTTCGGATTCGACAATGACCCAGACGCAGGAGTCATTGGG
AGGGTTGGCTTTGAGTATGGTGCAGACGGCGTTGGGAATCACGGTAGGAC
TGTTTCTTTCCGCGATGGTGGTCTACCCTGGTGGAAAACGCAAGGGTGGA
CTGTTCAATCTGTGAATACGTTGCATTCTATGTAGATAGCCTTTAACTGA
ACATCCCAGTCTATGATCTATGATCTGTGATCCATCTA
back to top

Coding sequence (CDS) from alignment at ch1:401847..404384-

>KJC3_000267-T1 ID=KJC3_000267-T1|Name=KJC3_000267-T1|organism=Aspergillus niger KJC3|type=CDS|length=1992bp|location=Sequence derived from alignment at ch1:401847..404384- (Aspergillus niger KJC3)
ATGTCCAGCCCAGTTGACGATTCCAATACCCATCTGGGTCCTCCTCGACG
CGACACCGACCCCTCCAGTGATGACGACCGTCTGGGTAACCGATCGACCA
ACAATGACGAACGACCGTTGACCCGCGAAAACCCTCCTCCGCCCTCCGGG
GGTAACCAGTGGGGCGTGCTCTTCAAAGCCATCCGCGATGGCACTTCACA
ACTCGCGGAAAAACTTGGTCGTGATCCTGACGGCGGTGATGGACTGGATT
CGGCCTGGCACCCTGAAGATTACGGATTCCAAGAGGACATTGAGATGAGA
GAGATGCTCGCACAGGAGGAACTCGAGGAGCATGCCTACGCTTCCAAGCT
GCAGTCCGTGCTGGGTTCCGATGCCAACAATCTCGTGAAGAACCTGGGCT
TGGGTGAAACTCCGTCGCGGACCAACAGTAATGATGAGAACCTCGTCGGA
GGTGTACTCTGGCATTTACTCAGTCATCAGATGGGCCATAACCCGGAGGA
AATCCATGACGATGGTGCGGTGCCCACATCTACAGAAGACGGACTGGCGC
CGTTACCCACTGACCTGCGGAAGCGTCGCAAGAAGAAGTGGTACGACGAG
GATCCAACGAATGACAAAGAAGGTCGGAAGAAAATGAAGGAAGAGCTGTT
GACACAGAAGATTGGTTCGCTTCTCACCCGCCAGCGCTATATGATCCAGC
TGTGTCGGGCATTGATGAAATTCGGCGCTCCGACGCATCGTCTCGAAGAA
TACATGCAGATGACGGCTTACCGACTGCGGGTACATGGCCAATTCATGTA
CATTCCCGGCTGCATGATTATCTCGTTTGACGATCCCCTTACCCGCACTG
CGGAGGTCAAGCTGGTCCGCACAACCCACGGATTGGACCTCGGTCGGCTC
GGTGATATTCACAATTGCTATAAGAATGTGCTTCATGGCCGACTGTCGCC
GGATGAGGCTCTTCCGGTCATGGACGATCTTCTTACCCGAAAGAGTCGCA
TTCATCAGGCCTGGTTGTTGGTTTTGCTGTCCGGCCTGGCGAGTGTGGCG
GTGGGTCCGTGGGCGTTCAGCGCGCGCCCGGTCGACATGCCCATTATCTT
CGTCCTGGGCTGTCTCCTCGGAACATTGCAGTATGTGCTGGCACCACGAT
CGGCGCTGTACTCCAATGTGTTCGAAGTCACCGTGGCCATGCTCACGTCG
TTCTTGGCTCGTGCATTTGGAAGCATTTACTACTCGAGCGGCGAGCCTGT
TTTCTGTTTCTCCGCCCTGGCAGAATCATCCATCGCGCTCATTCTACCGG
GATACTCTGTGCTGTGTAGCAGTCTGGAATTGCAATCGCATCAGATCGTG
GCAGGATCCATCCGATTGGTCTATACCATTATTTACTCGCTTTTTCTTGG
CTACGGCGTGACAGTCGGTCTCACGATTTACGGACTGATGGACGACAATG
CGACCAAAGCCACATCCTGCCCTTCACGAGATACCAACATCTATGGTAGC
GTGTACGTGCAGGAGTTTGTGTTTGTGGCCGTCTACTGCGCCTTTGCCGC
CATCCTCAACCAAGCCAAATGGAAGCAGCTGCCGATCATGTCCTTCATGG
GCGTCGCAGGCTACACAACCTACTACTTCACAGCCAACCACTTGGACAGT
CGGTTCGGCAGTACCATTGGAGCTTTCACGATCGGATTGTGTGCCAACTT
GTACAGTCGAGTCTGGCATGGACACGCTGCTGCGGCCATCGTGCCGGGTA
TGTGGACGCTGGTTTCGTCTGGTTTGGCTAGTAGTGGATCCATCATCTCG
GGACTGGCGTACGCAGAAGCAGTAAAAAATAACACTGTTTCGGATTCGAC
AATGACCCAGACGCAGGAGTCATTGGGAGGGTTGGCTTTGAGTATGGTGC
AGACGGCGTTGGGAATCACGGTAGGACTGTTTCTTTCCGCGATGGTGGTC
TACCCTGGTGGAAAACGCAAGGGTGGACTGTTCAATCTGTGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000267KJC3_000267Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000267-T1KJC3_000267-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000267-T1.cdsKJC3_000267-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000267-T1.utr3p1KJC3_000267-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000267-T1.exon2KJC3_000267-T1.exon2Aspergillus niger KJC3exon
KJC3_000267-T1.exon1KJC3_000267-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000267-T1.utr5p2KJC3_000267-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_000267-T1.utr5p1KJC3_000267-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR024528
DBxrefInterPro:IPR010619
DBxrefPFAM:PF12821
DBxrefPFAM:PF06738
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:401847..404384 -
Powered by Drupal