You are here

Home

KJC3_000275-T1, KJC3_000275-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000275-T1
Unique NameKJC3_000275-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:418698..419909+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000275-T1 ID=KJC3_000275-T1|Name=KJC3_000275-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1212bp|location=Sequence derived from alignment at ch1:418698..419909+ (Aspergillus niger KJC3)
ATGTATCAACTCCTATCAGTTGCCTCGGTTCCTCTGCTGGCCAGCCTCGT
GCATGGCTATGCTGACCCCGGAGCATGCTCGGGTGTTTGTACCACCCATG
ACCCCGGTTTGATCCGGAGAGAGTCGGACGGTACATACTTCCTCTTCTCT
ACAGGAAACAAAATCTCCTACGTCTCTGCATCATCCATCGAAGGACCATG
GACCAGCGTTGGGTCTATGCTGCCGGATGGATCGTCCATCGACCTCGATG
GCAACGATGATCTTTGGGTAACTATGTCCCACTGCAAACATGATTGGCCT
GTCTGACACTAGCCCAGGCCCCGGATGTCTCCTATGTAGATGGTCTCTAT
TATGTATACTACGCTGTGTCGACCTTTGGATCCCAAGATTCCGCCATCGG
ACTTGCAACGTCCGAGACGATGGAATATGGCTCTTGGACGGATCATGGCT
CCACTGGCATTGCGTCTTCCTCAGCCAAGATTTATAATGCGATCGACCCC
AACCTGATCTACGCCGATGGCACCTACTACATCAACTTTGGGTCGTTCTG
GGATGACATTTACCAAGTCCCGATGAAGTCGACCCCAACGGCAGCTGCCT
CTTCCTCCTACAATCTTGCGTATGACCCGTCGGGTACCCATGCGGAGGAG
GGTTCCTATATGTTTCAGTACGGTGACTACTACTACCTCTTTTACTCGGC
AGGTATCTGCTGTGGATACGATACATCCATGCCCGCTTCCGGAGAGGAGT
ATCATATCAAGGTCTGCCGTTCGACTTCGCCCACGGGTGATTTCGTAAGT
ATATCCGACATTTAGAGAAAATACTAAGTAGGGAAAGCTAACCTGGTGCT
AAGGTTGACTCCGACGGTACGGCGTGCACGGATGGCGGGGGCACGATGGT
GCTCGAAAGCCATGGAGAAGTCTATGGCCCTGGCGGACAGTAAGTGATTC
TGCAGCTGCCCCACCGATATTTATGCTTATCATGTTTTAGGGGTGTGTAT
GACGATCCCAACCTTGGTCCGGTTCTTTACTACCACTACATGAACACCAC
GATTGGATACGCGGATTCTGACGCGCAGTTTGGGTGGAACACGATCGACT
TCTCTAGCGGATGGCCGGTTGTATAAGCATCTTGGTTGGCGATGGAAATG
GTGCTGCCTACGAGAGGGTCTACAAGTTGTATATAGGATTGCGGCTATGA
ACTCGGCCGAGA
back to top

Coding sequence (CDS) from alignment at ch1:418698..419909+

>KJC3_000275-T1 ID=KJC3_000275-T1|Name=KJC3_000275-T1|organism=Aspergillus niger KJC3|type=CDS|length=3864bp|location=Sequence derived from alignment at ch1:418698..419909+ (Aspergillus niger KJC3)
ATGTATCAACTCCTATCAGTTGCCTCGGTTCCTCTGCTGGCCAGCCTCGT
GCATGGCTATGCTGACCCCGGAGCATGCTCGGGTGTTTGTACCACCCATG
ACCCCGGTTTGATCCGGAGAGAGTCGGACGGTACATACTTCCTCTTCTCT
ACAGGAAACAAAATCTCCTACGTCTCTGCATCATCCATCGAAGGACCATG
GACCAGCGTTGGGTCTATGCTGCCGGATGGATCGTCCATCGACCTCGATG
GCAACGATGATCTTTGGGCCCCGGATGTCTCCTATGTAGATGGTCTCTAT
TATGTATACTACGCTGTGTCGACCTTTGGATCCCAAGATTCCGCCATCGG
ACTTGCAACGTCCGAGACGATGGAATATGGCTCTTGGACGGATCATGGCT
CCACTGGCATTGCGTCTTCCTCAGCCAAGATTTATAATGCGATCGACCCC
AACCTGATCTACGCCGATGGCACCTACTACATCAACTTTGGGTCGTTCTG
GGATGACATTTACCAAGTCCCGATGAAGTCGACCCCAACGGCAGCTGCCT
CTTCCTCCTACAATCTTGCGTATGACCCGTCGGGTACCCATGCGGAGGAG
GGTTCCTATATGTTTCAGTACGGTGACTACTACTACCTCTTTTACTCGGC
AGGTATCTGCTGTGGATACGATACATCCATGCCCGCTTCCGGAGAGGAGT
ATCATATCAAGGTCTGCCGTTCGACTTCGCCCACGGGTGATTTCGTTGAC
TCCGACGGTACGGCGTGCACGGATGGCGGGGGCACGATGGTGCTCGAAAG
CCATGGAGAAGTCTATGGCCCTGGCGGACAGGGTGTGTATGACGATCCCA
ACCTTGGTCCGGTTCTTTACTACCACTACATGAACACCACGATTGGATAC
GCGGATTCTGACGCGCAGTTTGGGTGGAACACGATCGACTTCTCTAGCGG
ATGGCCGGTTGTATAAATGTATCAACTCCTATCAGTTGCCTCGGTTCCTC
TGCTGGCCAGCCTCGTGCATGGCTATGCTGACCCCGGAGCATGCTCGGGT
GTTTGTACCACCCATGACCCCGGTTTGATCCGGAGAGAGTCGGACGGTAC
ATACTTCCTCTTCTCTACAGGAAACAAAATCTCCTACGTCTCTGCATCAT
CCATCGAAGGACCATGGACCAGCGTTGGGTCTATGCTGCCGGATGGATCG
TCCATCGACCTCGATGGCAACGATGATCTTTGGGCCCCGGATGTCTCCTA
TGTAGATGGTCTCTATTATGTATACTACGCTGTGTCGACCTTTGGATCCC
AAGATTCCGCCATCGGACTTGCAACGTCCGAGACGATGGAATATGGCTCT
TGGACGGATCATGGCTCCACTGGCATTGCGTCTTCCTCAGCCAAGATTTA
TAATGCGATCGACCCCAACCTGATCTACGCCGATGGCACCTACTACATCA
ACTTTGGGTCGTTCTGGGATGACATTTACCAAGTCCCGATGAAGTCGACC
CCAACGGCAGCTGCCTCTTCCTCCTACAATCTTGCGTATGACCCGTCGGG
TACCCATGCGGAGGAGGGTTCCTATATGTTTCAGTACGGTGACTACTACT
ACCTCTTTTACTCGGCAGGTATCTGCTGTGGATACGATACATCCATGCCC
GCTTCCGGAGAGGAGTATCATATCAAGGTCTGCCGTTCGACTTCGCCCAC
GGGTGATTTCGTTGACTCCGACGGTACGGCGTGCACGGATGGCGGGGGCA
CGATGGTGCTCGAAAGCCATGGAGAAGTCTATGGCCCTGGCGGACAGGGT
GTGTATGACGATCCCAACCTTGGTCCGGTTCTTTACTACCACTACATGAA
CACCACGATTGGATACGCGGATTCTGACGCGCAGTTTGGGTGGAACACGA
TCGACTTCTCTAGCGGATGGCCGGTTGTATAAATGTATCAACTCCTATCA
GTTGCCTCGGTTCCTCTGCTGGCCAGCCTCGTGCATGGCTATGCTGACCC
CGGAGCATGCTCGGGTGTTTGTACCACCCATGACCCCGGTTTGATCCGGA
GAGAGTCGGACGGTACATACTTCCTCTTCTCTACAGGAAACAAAATCTCC
TACGTCTCTGCATCATCCATCGAAGGACCATGGACCAGCGTTGGGTCTAT
GCTGCCGGATGGATCGTCCATCGACCTCGATGGCAACGATGATCTTTGGG
CCCCGGATGTCTCCTATGTAGATGGTCTCTATTATGTATACTACGCTGTG
TCGACCTTTGGATCCCAAGATTCCGCCATCGGACTTGCAACGTCCGAGAC
GATGGAATATGGCTCTTGGACGGATCATGGCTCCACTGGCATTGCGTCTT
CCTCAGCCAAGATTTATAATGCGATCGACCCCAACCTGATCTACGCCGAT
GGCACCTACTACATCAACTTTGGGTCGTTCTGGGATGACATTTACCAAGT
CCCGATGAAGTCGACCCCAACGGCAGCTGCCTCTTCCTCCTACAATCTTG
CGTATGACCCGTCGGGTACCCATGCGGAGGAGGGTTCCTATATGTTTCAG
TACGGTGACTACTACTACCTCTTTTACTCGGCAGGTATCTGCTGTGGATA
CGATACATCCATGCCCGCTTCCGGAGAGGAGTATCATATCAAGGTCTGCC
GTTCGACTTCGCCCACGGGTGATTTCGTTGACTCCGACGGTACGGCGTGC
ACGGATGGCGGGGGCACGATGGTGCTCGAAAGCCATGGAGAAGTCTATGG
CCCTGGCGGACAGGGTGTGTATGACGATCCCAACCTTGGTCCGGTTCTTT
ACTACCACTACATGAACACCACGATTGGATACGCGGATTCTGACGCGCAG
TTTGGGTGGAACACGATCGACTTCTCTAGCGGATGGCCGGTTGTATAAAT
GTATCAACTCCTATCAGTTGCCTCGGTTCCTCTGCTGGCCAGCCTCGTGC
ATGGCTATGCTGACCCCGGAGCATGCTCGGGTGTTTGTACCACCCATGAC
CCCGGTTTGATCCGGAGAGAGTCGGACGGTACATACTTCCTCTTCTCTAC
AGGAAACAAAATCTCCTACGTCTCTGCATCATCCATCGAAGGACCATGGA
CCAGCGTTGGGTCTATGCTGCCGGATGGATCGTCCATCGACCTCGATGGC
AACGATGATCTTTGGGCCCCGGATGTCTCCTATGTAGATGGTCTCTATTA
TGTATACTACGCTGTGTCGACCTTTGGATCCCAAGATTCCGCCATCGGAC
TTGCAACGTCCGAGACGATGGAATATGGCTCTTGGACGGATCATGGCTCC
ACTGGCATTGCGTCTTCCTCAGCCAAGATTTATAATGCGATCGACCCCAA
CCTGATCTACGCCGATGGCACCTACTACATCAACTTTGGGTCGTTCTGGG
ATGACATTTACCAAGTCCCGATGAAGTCGACCCCAACGGCAGCTGCCTCT
TCCTCCTACAATCTTGCGTATGACCCGTCGGGTACCCATGCGGAGGAGGG
TTCCTATATGTTTCAGTACGGTGACTACTACTACCTCTTTTACTCGGCAG
GTATCTGCTGTGGATACGATACATCCATGCCCGCTTCCGGAGAGGAGTAT
CATATCAAGGTCTGCCGTTCGACTTCGCCCACGGGTGATTTCGTTGACTC
CGACGGTACGGCGTGCACGGATGGCGGGGGCACGATGGTGCTCGAAAGCC
ATGGAGAAGTCTATGGCCCTGGCGGACAGGGTGTGTATGACGATCCCAAC
CTTGGTCCGGTTCTTTACTACCACTACATGAACACCACGATTGGATACGC
GGATTCTGACGCGCAGTTTGGGTGGAACACGATCGACTTCTCTAGCGGAT
GGCCGGTTGTATAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0046558arabinan endo-1,5-alpha-L-arabinosidase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000275KJC3_000275Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000275-T1KJC3_000275-T1-proteinAspergillus niger KJC3polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000275-T1.exon1KJC3_000275-T1.exon1Aspergillus niger KJC3exon
KJC3_000275-T1.exon2KJC3_000275-T1.exon2Aspergillus niger KJC3exon
KJC3_000275-T1.exon3KJC3_000275-T1.exon3Aspergillus niger KJC3exon
KJC3_000275-T1.exon4KJC3_000275-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000275-T1.cdsKJC3_000275-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000275-T1.utr3p1KJC3_000275-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteSECRETED:SignalP(1-19)
NoteCAZy:GH43_8
NoteCAZy:GH43_30
NoteCAZy:GH43_7
NoteCAZy:GH43_4
NoteCAZy:GH43_3
NoteCAZy:GH43
NoteCAZy:GH43_5
NoteCAZy:GH43_6
DBxrefInterPro:IPR023296
DBxrefInterPro:IPR006710
DBxrefInterPro:IPR016840
DBxrefPFAM:PF04616
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:418698..419909 +
Powered by Drupal