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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:420055..423516+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000276-T2 ID=KJC3_000276-T2|Name=KJC3_000276-T2|organism=Aspergillus niger KJC3|type=mRNA|length=3462bp|location=Sequence derived from alignment at ch1:420055..423516+ (Aspergillus niger KJC3)
ACTCATTTGGTGAAGACATTCATTCTTCCCTTCAACCACTCTATTAGAGC
ATTTCCATCTTCTCACACTGATCATCGTAATGCAGATTCAAGATCAGTTT
GGATTGAGATCCCTACTGCATGCACTGTGTGCGTGACAGAAGCTGGAACT
GGTACTCGCTCGATCCGTGCAGCGCGAGTCAGTCACATCCGCCCTGCGCT
TCAGACTAGCCTGCCAATAGTGACTATCACAAGGGCCGTACTAAGATCGA
ATAACAGCTTTCCTAACAACATCGCGTTAACGTGTTACTTTCCTCCAGCT
TACATTTTGCTATTGAAGCCATATACGATCCCTTCGATGCGCTCGGTTTA
ACTTCTGCCACGATCACCCGTTCATCGAAGATTCTGGGAGTCTGTCGGTC
TTCATGCCAGCAAAGATCGACTCAAATACACACAGTCAGCAACATCTGTT
GCTTGTTACGGATGGTGCCTATTATAATGCATGAATAGGGGACCAAGCAA
TTCTCCGCTGTCGGCGATGTTGAATTAAGGAGGGATAATATTTGATCGAA
TGACAAAGGGAAGAATTGTGCGACACGAGGGAACCTTATACTTGTCTACG
GCCTAGCAGCAAAGCTTATATGCTCGAAATTATACTTGTTATTGTGAACT
CATGCGCTTGTGCGGTCACAGGAGTACCCCACACGATCGCTGCGATGCCT
TTCTATCGTGCGGTGTACACTTCTCATTTCCGTCCAATACTGGAATAGAG
CGAGTCATTGTTCAGAAGGAGGAATCATCCATGGTTCGATCCCCGCAGCA
GACACTTGTGCTCGTCACGAGGTGATTCGGTGAGTTTCCATTGTCGAATC
AGGAAGGCAGTTCGGCAGTGGATAGTTTTCGGCTTTTCTCGCTTGCTCCA
CTCCCGAACCAACGTCAATCCGGGCCTCGTCGCGACCTGTCACCCCCCGA
CTATCGATCTCCCCATCCGGCTGTTTCCCATTTCGCTTCGCATCCTCGCA
TGCTGTAGCCGAAGAACCCCGATGATGTGAGGTACAATGGCCGATGTTAC
GCAGGGGACCTCGCGTGGCGTTCGGAAACCTCGCAAATCCCGCGGCCGTG
GATTGCGGGCCACCACTGGCTGGTCAGTGACCAATCCTCCGAATTTCTTT
TAGTGCTAGTATTCCTTCTGCTGGACGGACCTGCTGACTGCCACAGCCTG
ATTTGCAAGCGTCGCCATGTCAAGTGTGATGAGGTACGGCAACTTAGCGA
AACGTTCTTTCGCAAAAAATATTTCCTGCTGACTCGGACGCAGGCTCGCC
CACAATGCGGCCCTTGCGCCAAAGGCCAACGCGACTGTGTTTATGGGAGC
AGCTATGAATCTGGAACTCCTAGTATAGGGGCTAAGCAAACAACCATCCC
AGTGCACTCCTCTCCTTCATCACAATTGACTCCACAGGTGCAGCTACACG
AGCCCCTGCAAGTCTTGGTAGATGTCTGCCAACATGAAGACGCTTCCACT
CACCGAGCGTCGGCTACGGCATCTCCAAGGGGCCAACACAGCAGTGTGCC
GCCTCAGATTAGTCTACATCAACACAGCCATGTCTCTCCTTCGGCCTCAA
TCCACGACTTCGCACCATCTCCGGCTACAGATTCCTCGGTATCGACGAGA
ATTGCTCCTTTGAGTTGGTTCGAGCTTCTGGCCAACGATGCTGTCAATGC
GGACCGGAATTTTTTCCTATCATCACCGCATCGAGACGTGAATCCTGCTT
GCCAGGGATCAACAACCCATCTATCGGTCGCAACCCTGCGACCTCACAAT
GTTAGGGAATGTCAAAGCTTTCAAGCCGCTTCTTTTGAACGTGATCCGGA
TATCGAGAAGAGAATATCGCCTGCAGCTGATGGCCATCCAAAGCTTCCCG
ATGCTCCGTCCTCTTGGTGTACTGCCGCGCCCATTCAGTTATCGGAACAA
GAACACCTCATGTTCAAACACTTTGTACGGAACATGTCTAGTTGGTATGA
TTTCTTTGACCCAACGCAACAGATTTCGAGTAAGGTTCCACAATTGGCAA
TGAGAAACATAGGTGTAATGAAGGCCCTTCTGGCCCTCTCGGCACGCCAT
CTTTCCATCTGGCATACCTACAAAGGCTCAGGGCTTGTTCCATCCCGGGA
AGATGGAAGAAGAATGATGGATTTCCCAGATGTCGATCGCAACATTGCAG
TCCAGTATTACTACGAGACCCTGCAGTACCTCAACAAGGCTATGCAGTAT
CCCAGCTACGCATACAGCCACGAGATCATTACCACGTCACTCCTGATCAG
CACATACGAAATGGTGGATGGATCCAATCGCGACTGGGAGCGGCATCTGA
AAGGGGTATTCTGGATTCAAAGGTACCAAAACAACGATGGAGAATGTGGG
GGGTTGCGTCAAGCCATCTGGTGGGCATGGCTGCGGCAGGATGTCTGGGT
AGCAATGCGGGAGCGACGTCGAGTCTTCAGCTTCTGGAAGCCCAAGCGAC
ACATCTCCTCGCTGTCCCCGACGGAGCTGGCCGGCTTCGTTTCATACATC
CTTGGACAATGCGTCAACTATGCCTCGCGTGAAGAGGCAGCATCTAAAGA
CATACAGAGTCGATTGGAGAGGGGCAATGAGCTCCTCTACATGCTGCAGG
AATGGCAGGATTATTTGCCACCGGAGTTCAATCCACTCCCTTGTGAGCAG
GACGCGACCGTCTTTCCACCGATCTGGGTCCATCCGCCCCCATATGCAGC
GGCATTGCAAATACAAAGCTTAGCTAGAATTCTGGTATTATCACACCGTC
CGACTGTGAACGGGTTCCAAGATTACCGTGCTGCTCAAAAGCTGCTTACT
ACGTCAGTGAACACAATATGTGGCATTGCTCGAACTATAAGCGAGGACAA
CGTCGCTGCCAGCCTTATGTCACTGTATTGTATATATGGGGGTAAGAAGG
GTCTTTTGTTGTCGTGGTATGATTCTTTGCTGACCCTTTTCTGCAGCTGG
GATGAGCGTTCATACCCCTCACGAGCGGGCAGCATTGCTCGAATTAATCG
ATATTTTCGAGAGCAGAGTCTGTTGGCCTAGATATTCATTACGCAACGAC
CTCGAATCAGAATACCGTAAGGATGGCCTTTCTGGTTTCACGACCAAGAA
TTTCCACATTCAATGCTTGTTCATACGAACCAGCTGGTACTTCGTGGGAC
CTATTGGCTTCATCGACGGGATGCAGTTCAGGTGCAAAAGCAGTGAGCTG
AGGCATTAGGCACAGTTGTCAGTTTGCATTCACCCCCACGCGACCGTCCG
CGACCGTCTGCAGTGCGATCACTGCGAAATCACCAGCACAAGCCTGGCGA
CATTAAGTCATGTCCTGAAACATTTTCAAACACATTATATTGGACTATAG
GTTCATAATCATAGTTGTATATTAGAACGAAGGAATGAAGGAATGAGTCA
CACTGAATGGTA back to topCoding sequence (CDS) from alignment at ch1:420055..423516+ >KJC3_000276-T2 ID=KJC3_000276-T2|Name=KJC3_000276-T2|organism=Aspergillus niger KJC3|type=CDS|length=5733bp|location=Sequence derived from alignment at ch1:420055..423516+ (Aspergillus niger KJC3)
ATGGCCGATGTTACGCAGGGGACCTCGCGTGGCGTTCGGAAACCTCGCAA
ATCCCGCGGCCGTGGATTGCGGGCCACCACTGGCTGCCTGATTTGCAAGC
GTCGCCATGTCAAGTGTGATGAGGCTCGCCCACAATGCGGCCCTTGCGCC
AAAGGCCAACGCGACTGTGTTTATGGGAGCAGCTATGAATCTGGAACTCC
TAGTATAGGGGCTAAGCAAACAACCATCCCAGTGCACTCCTCTCCTTCAT
CACAATTGACTCCACAGGTGCAGCTACACGAGCCCCTGCAAGTCTTGGTA
GATGTCTGCCAACATGAAGACGCTTCCACTCACCGAGCGTCGGCTACGGC
ATCTCCAAGGGGCCAACACAGCAGTGTGCCGCCTCAGATTAGTCTACATC
AACACAGCCATGTCTCTCCTTCGGCCTCAATCCACGACTTCGCACCATCT
CCGGCTACAGATTCCTCGGTATCGACGAGAATTGCTCCTTTGAGTTGGTT
CGAGCTTCTGGCCAACGATGCTGTCAATGCGGACCGGAATTTTTTCCTAT
CATCACCGCATCGAGACGTGAATCCTGCTTGCCAGGGATCAACAACCCAT
CTATCGGTCGCAACCCTGCGACCTCACAATGTTAGGGAATGTCAAAGCTT
TCAAGCCGCTTCTTTTGAACGTGATCCGGATATCGAGAAGAGAATATCGC
CTGCAGCTGATGGCCATCCAAAGCTTCCCGATGCTCCGTCCTCTTGGTGT
ACTGCCGCGCCCATTCAGTTATCGGAACAAGAACACCTCATGTTCAAACA
CTTTGTACGGAACATGTCTAGTTGGTATGATTTCTTTGACCCAACGCAAC
AGATTTCGAGTAAGGTTCCACAATTGGCAATGAGAAACATAGGTGTAATG
AAGGCCCTTCTGGCCCTCTCGGCACGCCATCTTTCCATCTGGCATACCTA
CAAAGGCTCAGGGCTTGTTCCATCCCGGGAAGATGGAAGAAGAATGATGG
ATTTCCCAGATGTCGATCGCAACATTGCAGTCCAGTATTACTACGAGACC
CTGCAGTACCTCAACAAGGCTATGCAGTATCCCAGCTACGCATACAGCCA
CGAGATCATTACCACGTCACTCCTGATCAGCACATACGAAATGGTGGATG
GATCCAATCGCGACTGGGAGCGGCATCTGAAAGGGGTATTCTGGATTCAA
AGGTACCAAAACAACGATGGAGAATGTGGGGGGTTGCGTCAAGCCATCTG
GTGGGCATGGCTGCGGCAGGATGTCTGGGTAGCAATGCGGGAGCGACGTC
GAGTCTTCAGCTTCTGGAAGCCCAAGCGACACATCTCCTCGCTGTCCCCG
ACGGAGCTGGCCGGCTTCGTTTCATACATCCTTGGACAATGCGTCAACTA
TGCCTCGCGTGAAGAGGCAGCATCTAAAGACATACAGAGTCGATTGGAGA
GGGGCAATGAGCTCCTCTACATGCTGCAGGAATGGCAGGATTATTTGCCA
CCGGAGTTCAATCCACTCCCTTGTGAGCAGGACGCGACCGTCTTTCCACC
GATCTGGGTCCATCCGCCCCCATATGCAGCGGCATTGCAAATACAAAGCT
TAGCTAGAATTCTGGTATTATCACACCGTCCGACTGTGAACGGGTTCCAA
GATTACCGTGCTGCTCAAAAGCTGCTTACTACGTCAGTGAACACAATATG
TGGCATTGCTCGAACTATAAGCGAGGACAACGTCGCTGCCAGCCTTATGT
CACTGTATTGTATATATGGGGGTAAGAAGGGTCTTTTGTTGTCGTGGTAT
GATTCTTTGCTGACCCTTTTCTGCAGCTGGGATGAGCGTTCATACCCCTC
ACGAGCGGGCAGCATTGCTCGAATTAATCGATATTTTCGAGAGCAGAGTC
TGTTGGCCTAGATGGCCGATGTTACGCAGGGGACCTCGCGTGGCGTTCGG
AAACCTCGCAAATCCCGCGGCCGTGGATTGCGGGCCACCACTGGCTGCCT
GATTTGCAAGCGTCGCCATGTCAAGTGTGATGAGGCTCGCCCACAATGCG
GCCCTTGCGCCAAAGGCCAACGCGACTGTGTTTATGGGAGCAGCTATGAA
TCTGGAACTCCTAGTATAGGGGCTAAGCAAACAACCATCCCAGTGCACTC
CTCTCCTTCATCACAATTGACTCCACAGGTGCAGCTACACGAGCCCCTGC
AAGTCTTGGTAGATGTCTGCCAACATGAAGACGCTTCCACTCACCGAGCG
TCGGCTACGGCATCTCCAAGGGGCCAACACAGCAGTGTGCCGCCTCAGAT
TAGTCTACATCAACACAGCCATGTCTCTCCTTCGGCCTCAATCCACGACT
TCGCACCATCTCCGGCTACAGATTCCTCGGTATCGACGAGAATTGCTCCT
TTGAGTTGGTTCGAGCTTCTGGCCAACGATGCTGTCAATGCGGACCGGAA
TTTTTTCCTATCATCACCGCATCGAGACGTGAATCCTGCTTGCCAGGGAT
CAACAACCCATCTATCGGTCGCAACCCTGCGACCTCACAATGTTAGGGAA
TGTCAAAGCTTTCAAGCCGCTTCTTTTGAACGTGATCCGGATATCGAGAA
GAGAATATCGCCTGCAGCTGATGGCCATCCAAAGCTTCCCGATGCTCCGT
CCTCTTGGTGTACTGCCGCGCCCATTCAGTTATCGGAACAAGAACACCTC
ATGTTCAAACACTTTGTACGGAACATGTCTAGTTGGTATGATTTCTTTGA
CCCAACGCAACAGATTTCGAGTAAGGTTCCACAATTGGCAATGAGAAACA
TAGGTGTAATGAAGGCCCTTCTGGCCCTCTCGGCACGCCATCTTTCCATC
TGGCATACCTACAAAGGCTCAGGGCTTGTTCCATCCCGGGAAGATGGAAG
AAGAATGATGGATTTCCCAGATGTCGATCGCAACATTGCAGTCCAGTATT
ACTACGAGACCCTGCAGTACCTCAACAAGGCTATGCAGTATCCCAGCTAC
GCATACAGCCACGAGATCATTACCACGTCACTCCTGATCAGCACATACGA
AATGGTGGATGGATCCAATCGCGACTGGGAGCGGCATCTGAAAGGGGTAT
TCTGGATTCAAAGGTACCAAAACAACGATGGAGAATGTGGGGGGTTGCGT
CAAGCCATCTGGTGGGCATGGCTGCGGCAGGATGTCTGGGTAGCAATGCG
GGAGCGACGTCGAGTCTTCAGCTTCTGGAAGCCCAAGCGACACATCTCCT
CGCTGTCCCCGACGGAGCTGGCCGGCTTCGTTTCATACATCCTTGGACAA
TGCGTCAACTATGCCTCGCGTGAAGAGGCAGCATCTAAAGACATACAGAG
TCGATTGGAGAGGGGCAATGAGCTCCTCTACATGCTGCAGGAATGGCAGG
ATTATTTGCCACCGGAGTTCAATCCACTCCCTTGTGAGCAGGACGCGACC
GTCTTTCCACCGATCTGGGTCCATCCGCCCCCATATGCAGCGGCATTGCA
AATACAAAGCTTAGCTAGAATTCTGGTATTATCACACCGTCCGACTGTGA
ACGGGTTCCAAGATTACCGTGCTGCTCAAAAGCTGCTTACTACGTCAGTG
AACACAATATGTGGCATTGCTCGAACTATAAGCGAGGACAACGTCGCTGC
CAGCCTTATGTCACTGTATTGTATATATGGGGGTAAGAAGGGTCTTTTGT
TGTCGTGGTATGATTCTTTGCTGACCCTTTTCTGCAGCTGGGATGAGCGT
TCATACCCCTCACGAGCGGGCAGCATTGCTCGAATTAATCGATATTTTCG
AGAGCAGAGTCTGTTGGCCTAGATGGCCGATGTTACGCAGGGGACCTCGC
GTGGCGTTCGGAAACCTCGCAAATCCCGCGGCCGTGGATTGCGGGCCACC
ACTGGCTGCCTGATTTGCAAGCGTCGCCATGTCAAGTGTGATGAGGCTCG
CCCACAATGCGGCCCTTGCGCCAAAGGCCAACGCGACTGTGTTTATGGGA
GCAGCTATGAATCTGGAACTCCTAGTATAGGGGCTAAGCAAACAACCATC
CCAGTGCACTCCTCTCCTTCATCACAATTGACTCCACAGGTGCAGCTACA
CGAGCCCCTGCAAGTCTTGGTAGATGTCTGCCAACATGAAGACGCTTCCA
CTCACCGAGCGTCGGCTACGGCATCTCCAAGGGGCCAACACAGCAGTGTG
CCGCCTCAGATTAGTCTACATCAACACAGCCATGTCTCTCCTTCGGCCTC
AATCCACGACTTCGCACCATCTCCGGCTACAGATTCCTCGGTATCGACGA
GAATTGCTCCTTTGAGTTGGTTCGAGCTTCTGGCCAACGATGCTGTCAAT
GCGGACCGGAATTTTTTCCTATCATCACCGCATCGAGACGTGAATCCTGC
TTGCCAGGGATCAACAACCCATCTATCGGTCGCAACCCTGCGACCTCACA
ATGTTAGGGAATGTCAAAGCTTTCAAGCCGCTTCTTTTGAACGTGATCCG
GATATCGAGAAGAGAATATCGCCTGCAGCTGATGGCCATCCAAAGCTTCC
CGATGCTCCGTCCTCTTGGTGTACTGCCGCGCCCATTCAGTTATCGGAAC
AAGAACACCTCATGTTCAAACACTTTGTACGGAACATGTCTAGTTGGTAT
GATTTCTTTGACCCAACGCAACAGATTTCGAGTAAGGTTCCACAATTGGC
AATGAGAAACATAGGTGTAATGAAGGCCCTTCTGGCCCTCTCGGCACGCC
ATCTTTCCATCTGGCATACCTACAAAGGCTCAGGGCTTGTTCCATCCCGG
GAAGATGGAAGAAGAATGATGGATTTCCCAGATGTCGATCGCAACATTGC
AGTCCAGTATTACTACGAGACCCTGCAGTACCTCAACAAGGCTATGCAGT
ATCCCAGCTACGCATACAGCCACGAGATCATTACCACGTCACTCCTGATC
AGCACATACGAAATGGTGGATGGATCCAATCGCGACTGGGAGCGGCATCT
GAAAGGGGTATTCTGGATTCAAAGGTACCAAAACAACGATGGAGAATGTG
GGGGGTTGCGTCAAGCCATCTGGTGGGCATGGCTGCGGCAGGATGTCTGG
GTAGCAATGCGGGAGCGACGTCGAGTCTTCAGCTTCTGGAAGCCCAAGCG
ACACATCTCCTCGCTGTCCCCGACGGAGCTGGCCGGCTTCGTTTCATACA
TCCTTGGACAATGCGTCAACTATGCCTCGCGTGAAGAGGCAGCATCTAAA
GACATACAGAGTCGATTGGAGAGGGGCAATGAGCTCCTCTACATGCTGCA
GGAATGGCAGGATTATTTGCCACCGGAGTTCAATCCACTCCCTTGTGAGC
AGGACGCGACCGTCTTTCCACCGATCTGGGTCCATCCGCCCCCATATGCA
GCGGCATTGCAAATACAAAGCTTAGCTAGAATTCTGGTATTATCACACCG
TCCGACTGTGAACGGGTTCCAAGATTACCGTGCTGCTCAAAAGCTGCTTA
CTACGTCAGTGAACACAATATGTGGCATTGCTCGAACTATAAGCGAGGAC
AACGTCGCTGCCAGCCTTATGTCACTGTATTGTATATATGGGGGTAAGAA
GGGTCTTTTGTTGTCGTGGTATGATTCTTTGCTGACCCTTTTCTGCAGCT
GGGATGAGCGTTCATACCCCTCACGAGCGGGCAGCATTGCTCGAATTAAT
CGATATTTTCGAGAGCAGAGTCTGTTGGCCTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000276-T2.utr3p1 | KJC3_000276-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:420055..423516 + |
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