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KJC3_000299-T1, KJC3_000299-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000299-T1
Unique NameKJC3_000299-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:480917..481993-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000299-T1 ID=KJC3_000299-T1|Name=KJC3_000299-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1077bp|location=Sequence derived from alignment at ch1:480917..481993- (Aspergillus niger KJC3)
GTCTAAAAGGCGAACAGAGACAAGATGATGCCTGATTTATTTCTCGGCAA
GTCAAACTGTCTCGGAGATTCGTTCACCACGCTTATCATGCACACATTCT
CACAATCGAGCCCCATGCCTACAGAGGTCATCATCAAGATATTCGGGGAA
CTCACTCTTCCGGATTCGCTTCACTTGGCCGCGACTTGCCGTCGACTCCG
CCAGGTCATGAAAGAAAATACGCCTGCCATTTACAGACGCCTACGCAGAC
AGATCCCATGTGAGCGATATGCAAGAGTCGTACTGGCAGATCAAGGGGGC
CCGCCACCTTATTCGTCTTCTTCAATGACTATCGCGGATCTTTTACGGTT
GCGACGGAACTCTCGTATCGTGGAGAAGGCCATCGAGGTGTTTGACCGTG
ATATTACCGCGCATATTCGAAGTGAGTAGACAGATTGAGAAGCACAGTAA
GTATGAGAGACATGTGATAATTGAAATCTTTTACAGTTTCCCTTAAGAGC
ATCGATGACCAATTCTATGGAGGAAACCCACGTCCGCTGTCATTGACTCC
AACAGAACGCCATCGGTTCACTCGGAGCTACTACCAAGTTTGGAGTCTTC
TACTCCTAAACCAACCATCCCGACAAAAAAGATATCAGAATATGTTGCTG
AAGCACTTATACATGATCTACGAGATGACTGATCTTGATCAGCCAATTGG
GGACGAATCGAGATCTTTCCCAGCTGACGAGAAGCGATGCGAACTGCTTC
AAGAAGTAAGCGAGTACCTCCGTGATCTCTACCACAACATCCATGGAGTT
GACTACATCGATTTCTCGGGGCAAAGTGTTTCCATGCGTACGCAAGGTCA
TGCAGCTATATGGGACCATTGCCAGCCCGATTTAAAGAAGATTGTTTGCT
ACCAGTGGCGAGATCCAGAGAAGAAACCTGTCCAGGAGGAAGAGGTGTGG
GAGCATACAACTGATGAAGAATGAACTTGGGGTAGCTTAGACTGCCAAGG
ATCTACCTTTAATTACAGGACCAACTCGCATGTATCTTGAAGGTCCTGCA
TGTGGTGTACCAGAGAAGACTAGTGCA
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Coding sequence (CDS) from alignment at ch1:480917..481993-

>KJC3_000299-T1 ID=KJC3_000299-T1|Name=KJC3_000299-T1|organism=Aspergillus niger KJC3|type=CDS|length=1770bp|location=Sequence derived from alignment at ch1:480917..481993- (Aspergillus niger KJC3)
TTTCCCTTAAGAGCATCGATGACCAATTCTATGGAGGAAACCCACGTCCG
CTGTCATTGACTCCAACAGAACGCCATCGGTTCACTCGGAGCTACTACCA
AGTTTGGAGTCTTCTACTCCTAAACCAACCATCCCGACAAAAAAGATATC
AGAATATGTTGCTGAAGCACTTATACATGATCTACGAGATGACTGATCTT
GATCAGCCAATTGGGGACGAATCGAGATCTTTCCCAGCTGACGAGAAGCG
ATGCGAACTGCTTCAAGAAGTAAGCGAGTACCTCCGTGATCTCTACCACA
ACATCCATGGAGTTGACTACATCGATTTCTCGGGGCAAAGTGTTTCCATG
CGTACGCAAGGTCATGCAGCTATATGGGACCATTGCCAGCCCGATTTAAA
GAAGATTGTTTGCTACCAGTGGCGAGATCCAGAGAAGAAACCTGTCCAGG
AGGAAGAGGTGTGGGAGCATACAACTGATGAAGAATGAATGATGCCTGAT
TTATTTCTCGGCAAGTCAAACTGTCTCGGAGATTCGTTCACCACGCTTAT
CATGCACACATTCTCACAATCGAGCCCCATGCCTACAGAGGTCATCATCA
AGATATTCGGGGAACTCACTCTTCCGGATTCGCTTCACTTGGCCGCGACT
TGCCGTCGACTCCGCCAGGTCATGAAAGAAAATACGCCTGCCATTTACAG
ACGCCTACGCAGACAGATCCCATGTGAGCGATATGCAAGAGTCGTACTGG
CAGATCAAGGGGGCCCGCCACCTTATTCGTCTTCTTCAATGACTATCGCG
GATCTTTTACGGTTGCGACGGAACTCTCGTATCGTGGAGAAGGCCATCGA
GGTGTTTGACCGTGATATTACCGCGCATATTCGAATTTCCCTTAAGAGCA
TCGATGACCAATTCTATGGAGGAAACCCACGTCCGCTGTCATTGACTCCA
ACAGAACGCCATCGGTTCACTCGGAGCTACTACCAAGTTTGGAGTCTTCT
ACTCCTAAACCAACCATCCCGACAAAAAAGATATCAGAATATGTTGCTGA
AGCACTTATACATGATCTACGAGATGACTGATCTTGATCAGCCAATTGGG
GACGAATCGAGATCTTTCCCAGCTGACGAGAAGCGATGCGAACTGCTTCA
AGAAGTAAGCGAGTACCTCCGTGATCTCTACCACAACATCCATGGAGTTG
ACTACATCGATTTCTCGGGGCAAAGTGTTTCCATGCGTACGCAAGGTCAT
GCAGCTATATGGGACCATTGCCAGCCCGATTTAAAGAAGATTGTTTGCTA
CCAGTGGCGAGATCCAGAGAAGAAACCTGTCCAGGAGGAAGAGGTGTGGG
AGCATACAACTGATGAAGAATGAATGATGCCTGATTTATTTCTCGGCAAG
TCAAACTGTCTCGGAGATTCGTTCACCACGCTTATCATGCACACATTCTC
ACAATCGAGCCCCATGCCTACAGAGGTCATCATCAAGATATTCGGGGAAC
TCACTCTTCCGGATTCGCTTCACTTGGCCGCGACTTGCCGTCGACTCCGC
CAGGTCATGAAAGAAAATACGCCTGCCATTTACAGACGCCTACGCAGACA
GATCCCATGTGAGCGATATGCAAGAGTCGTACTGGCAGATCAAGGGGGCC
CGCCACCTTATTCGTCTTCTTCAATGACTATCGCGGATCTTTTACGGTTG
CGACGGAACTCTCGTATCGTGGAGAAGGCCATCGAGGTGTTTGACCGTGA
TATTACCGCGCATATTCGAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000299KJC3_000299Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000299-T1KJC3_000299-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000299-T1.cdsKJC3_000299-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000299-T1.utr3p1KJC3_000299-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000299-T1.exon2KJC3_000299-T1.exon2Aspergillus niger KJC3exon
KJC3_000299-T1.exon1KJC3_000299-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000299-T1.utr5p1KJC3_000299-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036047
DBxrefInterPro:IPR001810
DBxrefPFAM:PF12937
DBxrefPFAM:PF00646
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:480917..481993 -
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