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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:518296..520323+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000313-T1 ID=KJC3_000313-T1|Name=KJC3_000313-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2028bp|location=Sequence derived from alignment at ch1:518296..520323+ (Aspergillus niger KJC3)
TGAAGCAGTTCTCCCTCTCTCATCATTTCTGATAGGAAAAGATTCATGCT
TTGGAGGAGTTTGTTTCTTTACGGATTTCGGCAACGGTGACGTGGAATGT
TGTCAACAGAAAGATGAAGTACCTTCCAGGCGACGCAGGTACCTGTCCAC
GGGAGTCCATTGTCCTCAATGGGACCCAGTATATTCATTGGATAAGAGGG
TCCTGCAGCTGTCCAGCTTCACCCACGTGGAGTTAGCTTCACTACTAAAT
CTCGCTAACTATCGCCGGGGGTGAGGCATTCCATCATGCTGCCTCAGCTC
TGCGCACGTGGGAGATTGTCGCAACTGAGTGGAAGCCGACCGTCGGCAAC
AGGCACGCTGGTATCTTCGTAGGCCAAGATTCAATGGCACGACCACCGAA
GAGCACAATGAGACGACGAGGGAGGAATGAAGACATCGTACTTATATCTG
ATCGGACTCCCGCCTCCAGGTGTTACGACGATGACCAGCATCTACCAAGG
GTTGCTTGACATGATCTCCGTGTTGTTCTCCTTGCTGCTCTCCGCAGGGA
ATCCCGCCCTCGCGGCCCGCGACACTTTCTATCCTCCCCTCAACCACACT
ACCTACATCACCAACTCCTCCGTCGGCACCTATGGAGGAATCTACAGCGC
CCCGGCAGATCAGACCAGTAGCCCGACACCACAAGATGTCTACAATTACT
GTTCCATGCCTCATCCCCGCGCGGATACCTACTCGCTCCCGCCTCCCGTC
GCCAACCAATCCGTCTCTGCCCGCCTAGTCTACCTTGAATACGTGCAGCG
TCATCAGCGTCGCACCCCCTACAACATTCTTCCGGGCGGCGAGGTATGGG
TTCATCACTGTGCCTAGTTGAGGCTCGCTAACTTCGCTCTAGAACCAGGA
ATATCACTGCAACAACCTCCAGGCTCATCTCTACGTCTCTCCAGCTTCCC
AAGGTCCCACTCCGATTCCCGTCTATGGCCAAACTTATTCCGATCCCTCC
AACCCATTTCTGACAAACTATGTCAATGGATCGTGTCAGTATCCTCAATT
GACGATCGGGGGCTTTCTGGATGGCTATCAGCACGGTCGCGACCTCCGCG
CCGTCTATAGGGATCAACTGCAGCTAATCCCAGCGTCACCGGACGAGGAC
AATGGCAAGAAGATCTGGCTCCGTTCTAGTACCTCGGCCCTCACCCAAGA
ATCTGCCGGTGGGGTTTTGCGAGGTATCTGGCCCGAATACAATGCACCCC
TACCGCTACACCAGCAAGCTTCGGGGGTCGATACGGTCGACCAAGGATAC
TCCTGTTCCGCTCGCAGCGAGGTGCTCTCCACCATTGAGTCCACAACGGA
GTGGAACGAGCATCTGACAGTGACCCAGTCGCTCCGTAGTCAGCTGGCGA
CCATGTTCGACGCCGATACCTCCAGCTGGATGTCGACGTTTGACCATTTC
TCCGATAATTTCCAGGCGCGCCTCTGCAATGGCTATGAGCTACCCTGCAG
CCTGCAGAATGACACGCAGTGTGCAACTGTCAGCCAGGCAGACGAGGTTT
TCCGTGCGGGCGACTGGGAATGGAACTACTGGTGGCGACACAATGCAAAT
GCTACTCGGTACATCCAACTGGTCGAAGGTCTGTTCATCGGAGAGATTGT
TCGCCATCTGGAAGCGGTGCAGCAAGGGACATCCGAACTAGTGTATAGCC
ACAGTTTCGTTCATGATGGAGACCTTGGGCCCATCCTTGGCGCGTTGGGC
ATTAAAGCGTTGCGGTGGCCAGGTATGGGATCGAACATTGCTTTTGAAAT
ATGGTACGTTAATTTTTACTCGGACACTTCTCCCAAATATAACCAGTATG
AGACTCATGAGGCTGTAGGCAAACATCAGAAGACGACCTCTACGCTCGTG
TATTGTATAGTGGACACGCGATCGAAACAATTTACGGCACACTGGATTGG
ATACCTCTATCGTCCTTGATCCGCATTCTCCAGCCGTATATTCCAGACGA
CATCGTCTCGATGTGCCAGTCTAGCTAA back to topCoding sequence (CDS) from alignment at ch1:518296..520323+ >KJC3_000313-T1 ID=KJC3_000313-T1|Name=KJC3_000313-T1|organism=Aspergillus niger KJC3|type=CDS|length=4464bp|location=Sequence derived from alignment at ch1:518296..520323+ (Aspergillus niger KJC3)
ATGAAGACATCGTACTTATATCTGATCGGACTCCCGCCTCCAGGTGTTAC
GACGATGACCAGCATCTACCAAGGGTTGCTTGACATGATCTCCGTGTTGT
TCTCCTTGCTGCTCTCCGCAGGGAATCCCGCCCTCGCGGCCCGCGACACT
TTCTATCCTCCCCTCAACCACACTACCTACATCACCAACTCCTCCGTCGG
CACCTATGGAGGAATCTACAGCGCCCCGGCAGATCAGACCAGTAGCCCGA
CACCACAAGATGTCTACAATTACTGTTCCATGCCTCATCCCCGCGCGGAT
ACCTACTCGCTCCCGCCTCCCGTCGCCAACCAATCCGTCTCTGCCCGCCT
AGTCTACCTTGAATACGTGCAGCGTCATCAGCGTCGCACCCCCTACAACA
TTCTTCCGGGCGGCGAGAACCAGGAATATCACTGCAACAACCTCCAGGCT
CATCTCTACGTCTCTCCAGCTTCCCAAGGTCCCACTCCGATTCCCGTCTA
TGGCCAAACTTATTCCGATCCCTCCAACCCATTTCTGACAAACTATGTCA
ATGGATCGTGTCAGTATCCTCAATTGACGATCGGGGGCTTTCTGGATGGC
TATCAGCACGGTCGCGACCTCCGCGCCGTCTATAGGGATCAACTGCAGCT
AATCCCAGCGTCACCGGACGAGGACAATGGCAAGAAGATCTGGCTCCGTT
CTAGTACCTCGGCCCTCACCCAAGAATCTGCCGGTGGGGTTTTGCGAGGT
ATCTGGCCCGAATACAATGCACCCCTACCGCTACACCAGCAAGCTTCGGG
GGTCGATACGGTCGACCAAGGATACTCCTGTTCCGCTCGCAGCGAGGTGC
TCTCCACCATTGAGTCCACAACGGAGTGGAACGAGCATCTGACAGTGACC
CAGTCGCTCCGTAGTCAGCTGGCGACCATGTTCGACGCCGATACCTCCAG
CTGGATGTCGACGTTTGACCATTTCTCCGATAATTTCCAGGCGCGCCTCT
GCAATGGCTATGAGCTACCCTGCAGCCTGCAGAATGACACGCAGTGTGCA
ACTGTCAGCCAGGCAGACGAGGTTTTCCGTGCGGGCGACTGGGAATGGAA
CTACTGGTGGCGACACAATGCAAATGCTACTCGGTACATCCAACTGGTCG
AAGGTCTGTTCATCGGAGAGATTGTTCGCCATCTGGAAGCGGTGCAGCAA
GGGACATCCGAACTAGTGTATAGCCACAGTTTCGTTCATGATGGAGACCT
TGGGCCCATCCTTGGCGCGTTGGGCATTAAAGCGTTGCGGTGGCCAGGTA
TGGGATCGAACATTGCTTTTGAAATATGGCAAACATCAGAAGACGACCTC
TACGCTCGTGTATTGTATAGTGGACACGCGATCGAAACAATTTACGGCAC
ACTGGATTGGATACCTCTATCGTCCTTGATCCGCATTCTCCAGCCGTATA
TTCCAGACGACATCGTCTCGATGTGCCAGTCTAGCTAAATGAAGACATCG
TACTTATATCTGATCGGACTCCCGCCTCCAGGTGTTACGACGATGACCAG
CATCTACCAAGGGTTGCTTGACATGATCTCCGTGTTGTTCTCCTTGCTGC
TCTCCGCAGGGAATCCCGCCCTCGCGGCCCGCGACACTTTCTATCCTCCC
CTCAACCACACTACCTACATCACCAACTCCTCCGTCGGCACCTATGGAGG
AATCTACAGCGCCCCGGCAGATCAGACCAGTAGCCCGACACCACAAGATG
TCTACAATTACTGTTCCATGCCTCATCCCCGCGCGGATACCTACTCGCTC
CCGCCTCCCGTCGCCAACCAATCCGTCTCTGCCCGCCTAGTCTACCTTGA
ATACGTGCAGCGTCATCAGCGTCGCACCCCCTACAACATTCTTCCGGGCG
GCGAGAACCAGGAATATCACTGCAACAACCTCCAGGCTCATCTCTACGTC
TCTCCAGCTTCCCAAGGTCCCACTCCGATTCCCGTCTATGGCCAAACTTA
TTCCGATCCCTCCAACCCATTTCTGACAAACTATGTCAATGGATCGTGTC
AGTATCCTCAATTGACGATCGGGGGCTTTCTGGATGGCTATCAGCACGGT
CGCGACCTCCGCGCCGTCTATAGGGATCAACTGCAGCTAATCCCAGCGTC
ACCGGACGAGGACAATGGCAAGAAGATCTGGCTCCGTTCTAGTACCTCGG
CCCTCACCCAAGAATCTGCCGGTGGGGTTTTGCGAGGTATCTGGCCCGAA
TACAATGCACCCCTACCGCTACACCAGCAAGCTTCGGGGGTCGATACGGT
CGACCAAGGATACTCCTGTTCCGCTCGCAGCGAGGTGCTCTCCACCATTG
AGTCCACAACGGAGTGGAACGAGCATCTGACAGTGACCCAGTCGCTCCGT
AGTCAGCTGGCGACCATGTTCGACGCCGATACCTCCAGCTGGATGTCGAC
GTTTGACCATTTCTCCGATAATTTCCAGGCGCGCCTCTGCAATGGCTATG
AGCTACCCTGCAGCCTGCAGAATGACACGCAGTGTGCAACTGTCAGCCAG
GCAGACGAGGTTTTCCGTGCGGGCGACTGGGAATGGAACTACTGGTGGCG
ACACAATGCAAATGCTACTCGGTACATCCAACTGGTCGAAGGTCTGTTCA
TCGGAGAGATTGTTCGCCATCTGGAAGCGGTGCAGCAAGGGACATCCGAA
CTAGTGTATAGCCACAGTTTCGTTCATGATGGAGACCTTGGGCCCATCCT
TGGCGCGTTGGGCATTAAAGCGTTGCGGTGGCCAGGTATGGGATCGAACA
TTGCTTTTGAAATATGGCAAACATCAGAAGACGACCTCTACGCTCGTGTA
TTGTATAGTGGACACGCGATCGAAACAATTTACGGCACACTGGATTGGAT
ACCTCTATCGTCCTTGATCCGCATTCTCCAGCCGTATATTCCAGACGACA
TCGTCTCGATGTGCCAGTCTAGCTAAATGAAGACATCGTACTTATATCTG
ATCGGACTCCCGCCTCCAGGTGTTACGACGATGACCAGCATCTACCAAGG
GTTGCTTGACATGATCTCCGTGTTGTTCTCCTTGCTGCTCTCCGCAGGGA
ATCCCGCCCTCGCGGCCCGCGACACTTTCTATCCTCCCCTCAACCACACT
ACCTACATCACCAACTCCTCCGTCGGCACCTATGGAGGAATCTACAGCGC
CCCGGCAGATCAGACCAGTAGCCCGACACCACAAGATGTCTACAATTACT
GTTCCATGCCTCATCCCCGCGCGGATACCTACTCGCTCCCGCCTCCCGTC
GCCAACCAATCCGTCTCTGCCCGCCTAGTCTACCTTGAATACGTGCAGCG
TCATCAGCGTCGCACCCCCTACAACATTCTTCCGGGCGGCGAGAACCAGG
AATATCACTGCAACAACCTCCAGGCTCATCTCTACGTCTCTCCAGCTTCC
CAAGGTCCCACTCCGATTCCCGTCTATGGCCAAACTTATTCCGATCCCTC
CAACCCATTTCTGACAAACTATGTCAATGGATCGTGTCAGTATCCTCAAT
TGACGATCGGGGGCTTTCTGGATGGCTATCAGCACGGTCGCGACCTCCGC
GCCGTCTATAGGGATCAACTGCAGCTAATCCCAGCGTCACCGGACGAGGA
CAATGGCAAGAAGATCTGGCTCCGTTCTAGTACCTCGGCCCTCACCCAAG
AATCTGCCGGTGGGGTTTTGCGAGGTATCTGGCCCGAATACAATGCACCC
CTACCGCTACACCAGCAAGCTTCGGGGGTCGATACGGTCGACCAAGGATA
CTCCTGTTCCGCTCGCAGCGAGGTGCTCTCCACCATTGAGTCCACAACGG
AGTGGAACGAGCATCTGACAGTGACCCAGTCGCTCCGTAGTCAGCTGGCG
ACCATGTTCGACGCCGATACCTCCAGCTGGATGTCGACGTTTGACCATTT
CTCCGATAATTTCCAGGCGCGCCTCTGCAATGGCTATGAGCTACCCTGCA
GCCTGCAGAATGACACGCAGTGTGCAACTGTCAGCCAGGCAGACGAGGTT
TTCCGTGCGGGCGACTGGGAATGGAACTACTGGTGGCGACACAATGCAAA
TGCTACTCGGTACATCCAACTGGTCGAAGGTCTGTTCATCGGAGAGATTG
TTCGCCATCTGGAAGCGGTGCAGCAAGGGACATCCGAACTAGTGTATAGC
CACAGTTTCGTTCATGATGGAGACCTTGGGCCCATCCTTGGCGCGTTGGG
CATTAAAGCGTTGCGGTGGCCAGGTATGGGATCGAACATTGCTTTTGAAA
TATGGCAAACATCAGAAGACGACCTCTACGCTCGTGTATTGTATAGTGGA
CACGCGATCGAAACAATTTACGGCACACTGGATTGGATACCTCTATCGTC
CTTGATCCGCATTCTCCAGCCGTATATTCCAGACGACATCGTCTCGATGT
GCCAGTCTAGCTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000313-T1.utr5p1 | KJC3_000313-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_1.2 |
| DBxref | InterPro:IPR029033 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:518296..520323 + |
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