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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:640166..641070+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000357-T1 ID=KJC3_000357-T1|Name=KJC3_000357-T1|organism=Aspergillus niger KJC3|type=mRNA|length=905bp|location=Sequence derived from alignment at ch1:640166..641070+ (Aspergillus niger KJC3)
ATTCAGCCACAATGAAGGTCTCCAGCCTCCCCATCTTAGCCTTCCTCCCT
ACCTCCCTCGCCACAACCATCTACCTGGCGGGGGACTCCACCATGGCCAC
TGGCGGCGGTGGTTCCGACACAGCAGGTACTTTCCCACCTACACCATCAC
ACCTTCATCCACTAACAAACAATCAGGCTGGGGTGACTACGTCGCCCAAT
ACCTGAGCAACTCAAGCGGCATCACCGTGTCCAACCAAGCCGTAGCCGGG
CGCAGCGCACGGTCCTACACGCGCGAAGGCCGGTTCGACGACATCGCCAG
CACCCTTGAAGCGGGCGACTACGTGATCATCGAGTTCGGTCACAACGACG
GCGGCACGCTCAGCTCGACCAGCGACAACGGCCGCACCGACTGTTCCGGC
ACGGGCTCCGAAGTATGCTACTCGGAATACGACGGCGTCAATGAAACCAT
CCTCACCTTCCCTGCATACCTCGAGAACGCCGCCAATACATTCAAAAAAA
TCGGCGCGACCGTCATCATCTCTTCGCAGACGCCCGATAACCCCTGGGAA
ACAGGCACTTTCGTGGATGACCCGCCGCGGTTCGTCGAATACGCGGAGAT
CGCGGCGGACACGGCGGATACGTCGTACGTGAATCATTTTGCCTATGTGG
ATCAGGTGTATGAGGCGTTGGGAGCGGATACCGTGGATGCATTTTATCCG
ATTGATCATACGCATACGAGTCCGGCGGGGGCGGATGTTGTTGCTAAGGC
GTTTCTGAGGGGTGTGGTCTGTGGAAAGTTGAGCTTGGCGGATGAGCTTG
TGACGGATGATTTGGAGTTGGATGAGTATGAATGTTTGGATGAGTAGACG
TGGCTGCTACTTGGCCGTGGTAGCTCTGGAGCTTCGGTGATTAGAGCCAG
AGAAG back to topCoding sequence (CDS) from alignment at ch1:640166..641070+ >KJC3_000357-T1 ID=KJC3_000357-T1|Name=KJC3_000357-T1|organism=Aspergillus niger KJC3|type=CDS|length=1572bp|location=Sequence derived from alignment at ch1:640166..641070+ (Aspergillus niger KJC3)
ATGAAGGTCTCCAGCCTCCCCATCTTAGCCTTCCTCCCTACCTCCCTCGC
CACAACCATCTACCTGGCGGGGGACTCCACCATGGCCACTGGCGGCGGTG
GTTCCGACACAGCAGGCTGGGGTGACTACGTCGCCCAATACCTGAGCAAC
TCAAGCGGCATCACCGTGTCCAACCAAGCCGTAGCCGGGCGCAGCGCACG
GTCCTACACGCGCGAAGGCCGGTTCGACGACATCGCCAGCACCCTTGAAG
CGGGCGACTACGTGATCATCGAGTTCGGTCACAACGACGGCGGCACGCTC
AGCTCGACCAGCGACAACGGCCGCACCGACTGTTCCGGCACGGGCTCCGA
AGTATGCTACTCGGAATACGACGGCGTCAATGAAACCATCCTCACCTTCC
CTGCATACCTCGAGAACGCCGCCAATACATTCAAAAAAATCGGCGCGACC
GTCATCATCTCTTCGCAGACGCCCGATAACCCCTGGGAAACAGGCACTTT
CGTGGATGACCCGCCGCGGTTCGTCGAATACGCGGAGATCGCGGCGGACA
CGGCGGATACGTCGTACGTGAATCATTTTGCCTATGTGGATCAGGTGTAT
GAGGCGTTGGGAGCGGATACCGTGGATGCATTTTATCCGATTGATCATAC
GCATACGAGTCCGGCGGGGGCGGATGTTGTTGCTAAGGCGTTTCTGAGGG
GTGTGGTCTGTGGAAAGTTGAGCTTGGCGGATGAGCTTGTGACGGATGAT
TTGGAGTTGGATGAGTATGAATGTTTGGATGAGTAGATGAAGGTCTCCAG
CCTCCCCATCTTAGCCTTCCTCCCTACCTCCCTCGCCACAACCATCTACC
TGGCGGGGGACTCCACCATGGCCACTGGCGGCGGTGGTTCCGACACAGCA
GGCTGGGGTGACTACGTCGCCCAATACCTGAGCAACTCAAGCGGCATCAC
CGTGTCCAACCAAGCCGTAGCCGGGCGCAGCGCACGGTCCTACACGCGCG
AAGGCCGGTTCGACGACATCGCCAGCACCCTTGAAGCGGGCGACTACGTG
ATCATCGAGTTCGGTCACAACGACGGCGGCACGCTCAGCTCGACCAGCGA
CAACGGCCGCACCGACTGTTCCGGCACGGGCTCCGAAGTATGCTACTCGG
AATACGACGGCGTCAATGAAACCATCCTCACCTTCCCTGCATACCTCGAG
AACGCCGCCAATACATTCAAAAAAATCGGCGCGACCGTCATCATCTCTTC
GCAGACGCCCGATAACCCCTGGGAAACAGGCACTTTCGTGGATGACCCGC
CGCGGTTCGTCGAATACGCGGAGATCGCGGCGGACACGGCGGATACGTCG
TACGTGAATCATTTTGCCTATGTGGATCAGGTGTATGAGGCGTTGGGAGC
GGATACCGTGGATGCATTTTATCCGATTGATCATACGCATACGAGTCCGG
CGGGGGCGGATGTTGTTGCTAAGGCGTTTCTGAGGGGTGTGGTCTGTGGA
AAGTTGAGCTTGGCGGATGAGCTTGTGACGGATGATTTGGAGTTGGATGA
GTATGAATGTTTGGATGAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016787 | hydrolase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000357-T1.utr5p1 | KJC3_000357-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000357-T1.utr3p1 | KJC3_000357-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-17) |
| Note | CAZy:CE12 |
| DBxref | InterPro:IPR037459 |
| DBxref | InterPro:IPR036514 |
| DBxref | InterPro:IPR013830 |
| DBxref | PFAM:PF13472 |
| DBxref | PFAM:PF00657 |
| Product | Rhamnogalacturonan acetylesterase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:640166..641070 + |
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