|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:702159..703668+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000384-T1 ID=KJC3_000384-T1|Name=KJC3_000384-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1510bp|location=Sequence derived from alignment at ch1:702159..703668+ (Aspergillus niger KJC3)
CCAGTGCTCATCGCGGGAATAGTAATCATACCGATAATTATCCCGGCCAC
TAGTGAGTCTCTTGGATCAAAATGTCTCTGTCCAAGAACTTCATCCGCTC
AAGCCGCACCACCCAGCAATCGCTATGTCGATGCAGCATATCCCGCCGAC
AGGTGCAGCCTTCACAGGAACGCCACTTTAGCCGATCTCGCGCTGTCGCC
GCCCCAGTGACCGGAGCAAGTGAAGCCGAAGTCCAAGCAGCTCAGAAATA
CTGCTCGAATCTTCTTCTGTAAAGTCTTTCCAGTTGATTACCCATTTCAA
CCGGCAATCTATCTAATACATTCTTGGATTATGCCAGACAATACGACCGT
CCCTCCTATACCCTGAGCACCTTCATCCCCCGAAATGCGCAATCTTTCTA
CATCGCTCTTCGAGCTCTTAATGTCTCTCTTTCCCTAATCCCCGACACCA
CCTCCTCCCACACCATCGGGCTTATGCGCCTCCAATTCTGGCGCGATGCA
GTTGCCAAAACACTATCCGGTTCACCCCCGAAAGAGCCAATTGCTATTCT
CCTCGCCTCTGCCATTTCAGACCTAGCCGAGCGAACACAAGGCCGGGCGC
GCATCAGCAAAGGCTGGCTGAACAGAATGATCAATGCCCGCGAACAAACC
CTTACCAACGACCCGTACCCTGATATCGCGGCACTCGAGTCCTACGCCGA
AAGCACATACTCGACATTGCTCTACCTCACACTCTCAGCACTCCCCATGA
CCTCGGTAACGGCGGACCATGTGGCGTCGCATATTGGAAAGGCAGCCGGT
ATCACAGCTGTACTTCGTGGTTTGCCATTGGTAGCATTCCCGGGTGCATC
AACCCAACGTCCCGACCAGGCTGGTACGACAATGGCCGGAGGAGCTAAGC
AGGGAGCCGTAATGCTGCCATTGGATGTAATGGCGCAGGCTGGGGTGAAA
GAAGAAGAGGTGTTTCGCCTGGGCAGTGAGGCGCCAGGATTGCGGGATGC
TGTTTTTACGGTGGCCACTCGCGCCAGCGACCACCTGATTACCGTGCAGC
AGATGCTAAGCAATATTCGTGCTGGGCAAGATGCAGGACATGATTTTGAG
CACGGGCATGAAGAGGATCATCAGTATGATCTCGGATCCCAGAATGAGAC
ACCGCTTCAGGAGGTCAATCGTGCCTTTGGAGTGTTTATGCCGGCCGTTG
GAACGCGGCTGTGGCTGGATAGATTGGAGAGTCATGATTTTGATATCTTC
CAGCCTGAACTTCTCCGGTCGGATTGGAAGCTCCCTTGGAAGGCTTATAT
GGCTTTTACACGGAAGACATTCTCTTAATCTGTGAGCCTTTGACATTTGG
TTAGTGTATGTGTATGATATGATAGATGTACAATAGTATCGTGCACCAGG
CTAGGACCTGGCCGGCTTTACACAGTATGGCAAGAATCCTGCCATACTTC
GCCGTAACACAAGATTCATTCCATGAAGGGGCAGAAGCCGTACTCGAGCA
CTGAATCCCA back to topCoding sequence (CDS) from alignment at ch1:702159..703668+ >KJC3_000384-T1 ID=KJC3_000384-T1|Name=KJC3_000384-T1|organism=Aspergillus niger KJC3|type=CDS|length=2376bp|location=Sequence derived from alignment at ch1:702159..703668+ (Aspergillus niger KJC3)
ATGTCTCTGTCCAAGAACTTCATCCGCTCAAGCCGCACCACCCAGCAATC
GCTATGTCGATGCAGCATATCCCGCCGACAGGTGCAGCCTTCACAGGAAC
GCCACTTTAGCCGATCTCGCGCTGTCGCCGCCCCAGTGACCGGAGCAAGT
GAAGCCGAAGTCCAAGCAGCTCAGAAATACTGCTCGAATCTTCTTCTACA
ATACGACCGTCCCTCCTATACCCTGAGCACCTTCATCCCCCGAAATGCGC
AATCTTTCTACATCGCTCTTCGAGCTCTTAATGTCTCTCTTTCCCTAATC
CCCGACACCACCTCCTCCCACACCATCGGGCTTATGCGCCTCCAATTCTG
GCGCGATGCAGTTGCCAAAACACTATCCGGTTCACCCCCGAAAGAGCCAA
TTGCTATTCTCCTCGCCTCTGCCATTTCAGACCTAGCCGAGCGAACACAA
GGCCGGGCGCGCATCAGCAAAGGCTGGCTGAACAGAATGATCAATGCCCG
CGAACAAACCCTTACCAACGACCCGTACCCTGATATCGCGGCACTCGAGT
CCTACGCCGAAAGCACATACTCGACATTGCTCTACCTCACACTCTCAGCA
CTCCCCATGACCTCGGTAACGGCGGACCATGTGGCGTCGCATATTGGAAA
GGCAGCCGGTATCACAGCTGTACTTCGTGGTTTGCCATTGGTAGCATTCC
CGGGTGCATCAACCCAACGTCCCGACCAGGCTGGTACGACAATGGCCGGA
GGAGCTAAGCAGGGAGCCGTAATGCTGCCATTGGATGTAATGGCGCAGGC
TGGGGTGAAAGAAGAAGAGGTGTTTCGCCTGGGCAGTGAGGCGCCAGGAT
TGCGGGATGCTGTTTTTACGGTGGCCACTCGCGCCAGCGACCACCTGATT
ACCGTGCAGCAGATGCTAAGCAATATTCGTGCTGGGCAAGATGCAGGACA
TGATTTTGAGCACGGGCATGAAGAGGATCATCAGTATGATCTCGGATCCC
AGAATGAGACACCGCTTCAGGAGGTCAATCGTGCCTTTGGAGTGTTTATG
CCGGCCGTTGGAACGCGGCTGTGGCTGGATAGATTGGAGAGTCATGATTT
TGATATCTTCCAGCCTGAACTTCTCCGGTCGGATTGGAAGCTCCCTTGGA
AGGCTTATATGGCTTTTACACGGAAGACATTCTCTTAAATGTCTCTGTCC
AAGAACTTCATCCGCTCAAGCCGCACCACCCAGCAATCGCTATGTCGATG
CAGCATATCCCGCCGACAGGTGCAGCCTTCACAGGAACGCCACTTTAGCC
GATCTCGCGCTGTCGCCGCCCCAGTGACCGGAGCAAGTGAAGCCGAAGTC
CAAGCAGCTCAGAAATACTGCTCGAATCTTCTTCTACAATACGACCGTCC
CTCCTATACCCTGAGCACCTTCATCCCCCGAAATGCGCAATCTTTCTACA
TCGCTCTTCGAGCTCTTAATGTCTCTCTTTCCCTAATCCCCGACACCACC
TCCTCCCACACCATCGGGCTTATGCGCCTCCAATTCTGGCGCGATGCAGT
TGCCAAAACACTATCCGGTTCACCCCCGAAAGAGCCAATTGCTATTCTCC
TCGCCTCTGCCATTTCAGACCTAGCCGAGCGAACACAAGGCCGGGCGCGC
ATCAGCAAAGGCTGGCTGAACAGAATGATCAATGCCCGCGAACAAACCCT
TACCAACGACCCGTACCCTGATATCGCGGCACTCGAGTCCTACGCCGAAA
GCACATACTCGACATTGCTCTACCTCACACTCTCAGCACTCCCCATGACC
TCGGTAACGGCGGACCATGTGGCGTCGCATATTGGAAAGGCAGCCGGTAT
CACAGCTGTACTTCGTGGTTTGCCATTGGTAGCATTCCCGGGTGCATCAA
CCCAACGTCCCGACCAGGCTGGTACGACAATGGCCGGAGGAGCTAAGCAG
GGAGCCGTAATGCTGCCATTGGATGTAATGGCGCAGGCTGGGGTGAAAGA
AGAAGAGGTGTTTCGCCTGGGCAGTGAGGCGCCAGGATTGCGGGATGCTG
TTTTTACGGTGGCCACTCGCGCCAGCGACCACCTGATTACCGTGCAGCAG
ATGCTAAGCAATATTCGTGCTGGGCAAGATGCAGGACATGATTTTGAGCA
CGGGCATGAAGAGGATCATCAGTATGATCTCGGATCCCAGAATGAGACAC
CGCTTCAGGAGGTCAATCGTGCCTTTGGAGTGTTTATGCCGGCCGTTGGA
ACGCGGCTGTGGCTGGATAGATTGGAGAGTCATGATTTTGATATCTTCCA
GCCTGAACTTCTCCGGTCGGATTGGAAGCTCCCTTGGAAGGCTTATATGG
CTTTTACACGGAAGACATTCTCTTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000384-T1.utr5p1 | KJC3_000384-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000384-T1.utr3p1 | KJC3_000384-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR008949 |
| DBxref | PFAM:PF00494 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:702159..703668 + |
|
