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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:828675..829905- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000427-T1 ID=KJC3_000427-T1|Name=KJC3_000427-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1231bp|location=Sequence derived from alignment at ch1:828675..829905- (Aspergillus niger KJC3)
ATGAACGAAACCTTGTTCCAGCTGCCGTGTGTTCCGTTTATCCAAGGACA
CCGCTACACCGTCCGAGCAACAGAGGGTCCGATCAACCAAACGACCAACC
ACCAGCTGGAGAGTATGGGCGAGCCCGAACGAGGCAATTTAAAGTCAGTG
CTCGGTATATTGACCCTCTTCTACCCGAGGCAATTGCTCTTGACTGCTTT
GTTTTACCTCTGCTGCCTATGGTCACTTCTCCACCCGATTGCTGGAGAAT
TATCCCTAGATGTCCAGACATAGAGACATGATGAAAGTGGCGTCAGCATG
ATCACAGTCACACGAACACCCTTCCCCATCCCCATCCATGTTTACTGCAC
CCCGCACGTAATACGCATAACTTATAAGCTCCCCCGGATCCTCGCCCCAG
AATCCTTCTCCCCACCAACACCAGCATCAGAATCCTTCTCTCCACTCTAC
TACCCTTACCCCAGACTCAAACACAAGTACACTCACAATGACCTACTCAA
CCACCCCCATCGACGTTCTCCGTGACGCTGAACGCGTCTTCGAAGTGATC
AAAAACCAAGGCATCGCCCTCATTCCCGGCAGCATCGGCTACGGCCTAGT
CGCCAGCGACCCAGCAGCCCTGGACCGGCTCTTCACGACGAAGCGCCGCA
AACCACACAAGAAGCACGCCATGATCGGAAGCTACGCGCTCCACCAAGAA
ATCCACGTCCTCCCGGCCCGCGAAGAGTCCATGGTTCGGACTCTAACCGT
GGATCTGGATGTGCCCGTCGGCGTTGCGGCCCCGTTTCGGGCCGACCACC
CAATCATCCAGAAACTCGGCCCTGAGTTGCTCTCGCGCTGCACGCACGAC
GGCACCCTCTCCATGCTAGTGAATGGAGGACCCTTACAGGATGAACTCAT
TCGACTGTGCCATGCTGCGGGATTACCACTGCTCGGTTCATCGGCTAATA
TCTCGGGGTCGGGGATGAAGGTCCGCCTCGAGGATATTGAGCCCGAGATC
GTGGAGGCCGCGGATATCGTTATCGACTATGGCAAGCGCACGTTTAGTGT
GCCGCGCGCGTCATCGACGATCATCAACTTTCGGGATATGAAGCTCGTGC
GGTATGGCGCTTGCTATGATGTAATTCAAGACGTATTGAGGAAGTTCTAT
GGGGTGGAGTTGCCGGAGGACCCGGGCAAGGACGAGTTGTTTTCAGGACA
TATTGATGTTCAGCAGGCGACTGTGTATTGA back to topCoding sequence (CDS) from alignment at ch1:828675..829905- >KJC3_000427-T1 ID=KJC3_000427-T1|Name=KJC3_000427-T1|organism=Aspergillus niger KJC3|type=CDS|length=1842bp|location=Sequence derived from alignment at ch1:828675..829905- (Aspergillus niger KJC3)
ACTCAAACACAAGTACACTCACAATGACCTACTCAACCACCCCCATCGAC
GTTCTCCGTGACGCTGAACGCGTCTTCGAAGTGATCAAAAACCAAGGCAT
CGCCCTCATTCCCGGCAGCATCGGCTACGGCCTAGTCGCCAGCGACCCAG
CAGCCCTGGACCGGCTCTTCACGACGAAGCGCCGCAAACCACACAAGAAG
CACGCCATGATCGGAAGCTACGCGCTCCACCAAGAAATCCACGTCCTCCC
GGCCCGCGAAGAGTCCATGGTTCGGACTCTAACCGTGGATCTGGATGTGC
CCGTCGGCGTTGCGGCCCCGTTTCGGGCCGACCACCCAATCATCCAGAAA
CTCGGCCCTGAGTTGCTCTCGCGCTGCACGCACGACGGCACCCTCTCCAT
GCTAGTGAATGGAGGACCCTTACAGGATGAACTCATTCGACTGTGCCATG
CTGCGGGATTACCACTGCTCGGTTCATCGGCTAATATCTCGGGGTCGGGG
ATGAAGGTCCGCCTCGAGGATATTGAGCCCGAGATCGTGGAGGCCGCGGA
TATCGTTATCGACTATGGCAAGCGCACGTTTAGTGTGCCGCGCGCGTCAT
CGACGATCATCAACTTTCGGGATATGAAGCTCGTGCGGTATGGCGCTTGC
TATGATGTAATTCAAGACGTATTGAGGAAGTTCTATGGGGTGGAGTTGCC
GGAGGACCCGGGCAAGGACGAGTTGTTTTCAGGACATATTGATGTTCAGC
AGGCGACTGTGTATTGAATGAACGAAACCTTGTTCCAGCTGCCGTGTGTT
CCGTTTATCCAAGGACACCGCTACACCGTCCGAGCAACAGAGGGTCCGAT
CAACCAAACGACCAACCACCAGCTGGAGAGTATGGGCGAGCCCGAACGAG
GCAATTTAAAGTCAGTGCTCGACTCAAACACAAGTACACTCACAATGACC
TACTCAACCACCCCCATCGACGTTCTCCGTGACGCTGAACGCGTCTTCGA
AGTGATCAAAAACCAAGGCATCGCCCTCATTCCCGGCAGCATCGGCTACG
GCCTAGTCGCCAGCGACCCAGCAGCCCTGGACCGGCTCTTCACGACGAAG
CGCCGCAAACCACACAAGAAGCACGCCATGATCGGAAGCTACGCGCTCCA
CCAAGAAATCCACGTCCTCCCGGCCCGCGAAGAGTCCATGGTTCGGACTC
TAACCGTGGATCTGGATGTGCCCGTCGGCGTTGCGGCCCCGTTTCGGGCC
GACCACCCAATCATCCAGAAACTCGGCCCTGAGTTGCTCTCGCGCTGCAC
GCACGACGGCACCCTCTCCATGCTAGTGAATGGAGGACCCTTACAGGATG
AACTCATTCGACTGTGCCATGCTGCGGGATTACCACTGCTCGGTTCATCG
GCTAATATCTCGGGGTCGGGGATGAAGGTCCGCCTCGAGGATATTGAGCC
CGAGATCGTGGAGGCCGCGGATATCGTTATCGACTATGGCAAGCGCACGT
TTAGTGTGCCGCGCGCGTCATCGACGATCATCAACTTTCGGGATATGAAG
CTCGTGCGGTATGGCGCTTGCTATGATGTAATTCAAGACGTATTGAGGAA
GTTCTATGGGGTGGAGTTGCCGGAGGACCCGGGCAAGGACGAGTTGTTTT
CAGGACATATTGATGTTCAGCAGGCGACTGTGTATTGAATGAACGAAACC
TTGTTCCAGCTGCCGTGTGTTCCGTTTATCCAAGGACACCGCTACACCGT
CCGAGCAACAGAGGGTCCGATCAACCAAACGACCAACCACCAGCTGGAGA
GTATGGGCGAGCCCGAACGAGGCAATTTAAAGTCAGTGCTCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003725 | double-stranded RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR017945 |
| DBxref | InterPro:IPR006070 |
| DBxref | PFAM:PF01300 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:828675..829905 - |
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