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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:843887..845810+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000434-T1 ID=KJC3_000434-T1|Name=KJC3_000434-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1924bp|location=Sequence derived from alignment at ch1:843887..845810+ (Aspergillus niger KJC3)
GCTCAATAACATCCTGATTCAACCTAGATTTATCTCGTTCTTTTCGCTTT
AGATGAGAAATTCATATCATCATATCATTCCACCACTATCATGACGGACG
ATTACTTCAACCTAGGCTCGTACAGCCGAACCGTAACGACCAACTCCCCC
GACGCCCAGCTATGGTTTAACCGCGGACTTGTCTGGTCATACTCCTTCAA
TCACGAAGAAGCGTCCCGTTGTTTCATCAAAGCCAGCAAGGCCGATGAGA
ATTGTGCCATAGCGTACTGGGGCCTGGCCTATGCCCGTGGACCAAACTAC
AACAAGGCCTGGATTCGTTTCGACCTAGCGGATCTGGCCACCACTATTAC
GGAAATGAGACCCGTGCTCCAACGCGCCCAGGCCCTGGCAGCACAGGGGG
CAAGTCCGGCCGAAAGGGCTGTAATTGAGGCCTTGAAGGCTCGATTTCCC
AAAGATGATGATGAAACGAAGCCAGAAAACCTGGATCTTCATGCGTTGGA
TCGTGCCTATGCAGAAGCCATGCGACCTGTCTACGAAGCTTATCCGGAGG
ACCCTGATATTGTGGCTCTTTTTGTCGAGGCGCTCATGTGCATATCCCCA
CGGGCTCTGTGGAATCTTGACACTGGTGAACCCTGTGGTCCGCATACCAC
TGAGGCTCGTCGGGTTCTTGAGAAGGCCATGACCTCCCTTCCTGGGGGCA
GTAGCAACCCTGCATACTGCCATCTCTATATCCATCTCATGGAGATGGCG
CCGTATCCGGAGATTGCTTTACCAGCTGCGGATCGCCTTCTGCGACTCGT
GCCGGATGGTTCGCATATGCTGCATATGCCTAGCCATATTTACGTCGCCT
GTGGTGACTACCGAGCGGTCATTGATTCGAACAACCAGGCCATGGTTGTC
GACGACAAGTACTTTGCCAGGGAGCCGGGCACCATCTTATATATTATGTA
CCGAGCGCACAACATCTACGTGAAGGTCTATGGCGCAGTCATCTCCGGAA
ACTTTGCAGAGGCAATCTCCGGTATGAAGCGCCTTCAGGAGATCCTCACT
CCCGAGCTTTTGTCTATAACCAGCCCTCCGATCGCCAATTGGGCAGAAGG
GTTTCTGGGCGCCATAGCCCATGTGTTGATCCGCTTTGGACGGTGGGATG
ATATATTAGACTTAAAGCTCCCCGAGGACAAGGAGCTATTTGCCTCTACG
ACAGCGATGATATACTATGCCCGCGGCATTGCTTTGGCGGTATTGAATCG
AGTGGACGAGGCCCAAGAAGAAAGGAAGAAATTTGAGGCTGCCCGCGAAA
AGGTTCCACCATCTCGCTTGAACAGTCTGCCCGTTCGCGAGGTGGACGTC
CTTGAGATCGGGTCGGCTATGCTGAAAGGAGAGATCGAGTATCGCCAGGG
CAACTTTGAGGAGGCTTTCAATCACTTGAGACAAGCGACAAAGCTGGAGG
ATAACCTGGTCTATGCGGATCCTCCGCCGTGGATGCAGCCTGCGCGACAT
GCCCTGGGGGCTTTGCTTCTTGAACAGGGTCATGTTAGCGAAGCACAGCA
TGTGTATGAAGAAGATCTGGGATTGAGTGAGACCCTCCCACGTCGGAAGG
CAAGACTGAATAATGTCTGGAGTTTGCATGGCTTGTATGAGTGTCAGGTC
CGGCAAGGGTTGCACGACAAGGCCCGGTATATCCGTGCTCAACGCGACGT
TGCGCTGGCTTCGGCGGATGTTCCCATCAATGCTTCGTGTTTCTGTCGTC
TTTCGGCGGTTGAGTCGACCAGCGCTTGTTGTAAGTAGACAGTAGTACCA
GATTCAGAGTGCTGTATAGAATTGGTACATGGTTTCCATACAGCCAAAAC
CCTGCCCAATTGATTCCAGTATAGGCTCACCTCCCATATCTGGTTTACCT
CTTTGGGAAACCAGATTGGCCGAC back to topCoding sequence (CDS) from alignment at ch1:843887..845810+ >KJC3_000434-T1 ID=KJC3_000434-T1|Name=KJC3_000434-T1|organism=Aspergillus niger KJC3|type=CDS|length=1698bp|location=Sequence derived from alignment at ch1:843887..845810+ (Aspergillus niger KJC3)
ATGACGGACGATTACTTCAACCTAGGCTCGTACAGCCGAACCGTAACGAC
CAACTCCCCCGACGCCCAGCTATGGTTTAACCGCGGACTTGTCTGGTCAT
ACTCCTTCAATCACGAAGAAGCGTCCCGTTGTTTCATCAAAGCCAGCAAG
GCCGATGAGAATTGTGCCATAGCGTACTGGGGCCTGGCCTATGCCCGTGG
ACCAAACTACAACAAGGCCTGGATTCGTTTCGACCTAGCGGATCTGGCCA
CCACTATTACGGAAATGAGACCCGTGCTCCAACGCGCCCAGGCCCTGGCA
GCACAGGGGGCAAGTCCGGCCGAAAGGGCTGTAATTGAGGCCTTGAAGGC
TCGATTTCCCAAAGATGATGATGAAACGAAGCCAGAAAACCTGGATCTTC
ATGCGTTGGATCGTGCCTATGCAGAAGCCATGCGACCTGTCTACGAAGCT
TATCCGGAGGACCCTGATATTGTGGCTCTTTTTGTCGAGGCGCTCATGTG
CATATCCCCACGGGCTCTGTGGAATCTTGACACTGGTGAACCCTGTGGTC
CGCATACCACTGAGGCTCGTCGGGTTCTTGAGAAGGCCATGACCTCCCTT
CCTGGGGGCAGTAGCAACCCTGCATACTGCCATCTCTATATCCATCTCAT
GGAGATGGCGCCGTATCCGGAGATTGCTTTACCAGCTGCGGATCGCCTTC
TGCGACTCGTGCCGGATGGTTCGCATATGCTGCATATGCCTAGCCATATT
TACGTCGCCTGTGGTGACTACCGAGCGGTCATTGATTCGAACAACCAGGC
CATGGTTGTCGACGACAAGTACTTTGCCAGGGAGCCGGGCACCATCTTAT
ATATTATGTACCGAGCGCACAACATCTACGTGAAGGTCTATGGCGCAGTC
ATCTCCGGAAACTTTGCAGAGGCAATCTCCGGTATGAAGCGCCTTCAGGA
GATCCTCACTCCCGAGCTTTTGTCTATAACCAGCCCTCCGATCGCCAATT
GGGCAGAAGGGTTTCTGGGCGCCATAGCCCATGTGTTGATCCGCTTTGGA
CGGTGGGATGATATATTAGACTTAAAGCTCCCCGAGGACAAGGAGCTATT
TGCCTCTACGACAGCGATGATATACTATGCCCGCGGCATTGCTTTGGCGG
TATTGAATCGAGTGGACGAGGCCCAAGAAGAAAGGAAGAAATTTGAGGCT
GCCCGCGAAAAGGTTCCACCATCTCGCTTGAACAGTCTGCCCGTTCGCGA
GGTGGACGTCCTTGAGATCGGGTCGGCTATGCTGAAAGGAGAGATCGAGT
ATCGCCAGGGCAACTTTGAGGAGGCTTTCAATCACTTGAGACAAGCGACA
AAGCTGGAGGATAACCTGGTCTATGCGGATCCTCCGCCGTGGATGCAGCC
TGCGCGACATGCCCTGGGGGCTTTGCTTCTTGAACAGGGTCATGTTAGCG
AAGCACAGCATGTGTATGAAGAAGATCTGGGATTGAGTGAGACCCTCCCA
CGTCGGAAGGCAAGACTGAATAATGTCTGGAGTTTGCATGGCTTGTATGA
GTGTCAGGTCCGGCAAGGGTTGCACGACAAGGCCCGGTATATCCGTGCTC
AACGCGACGTTGCGCTGGCTTCGGCGGATGTTCCCATCAATGCTTCGTGT
TTCTGTCGTCTTTCGGCGGTTGAGTCGACCAGCGCTTGTTGTAAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000434-T1.utr5p1 | KJC3_000434-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000434-T1.utr3p1 | KJC3_000434-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013026 |
| DBxref | InterPro:IPR011990 |
| DBxref | InterPro:IPR019734 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:843887..845810 + |
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