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KJC3_000471-T1, KJC3_000471-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000471-T1
Unique NameKJC3_000471-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:960194..961395+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000471-T1 ID=KJC3_000471-T1|Name=KJC3_000471-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1202bp|location=Sequence derived from alignment at ch1:960194..961395+ (Aspergillus niger KJC3)
TCACGTCTTCCACCACATAACCCACACGGAACCGAGGCAATCGATACTCC
CTTGCCGACTTTCAGACAGCCAATGCGCTACTAGTCTATTCACCAACAAT
ACCACACCCATAACAGCACTAATACCCCTCCAATCTTCCCCCACCTCGCA
CCGCAACCATGCTCTTCTTCAGGTAAGAAAGCGCGCGAGATCCTCAAACA
AGCACCAAAGCGACCACAGCTAACTCCCTCTCCCTACGGGGATGACTATT
TGGTAGCTTCTTCAAGACCTTAACCAACCAAACGGTGACCATCGAACTCA
AGAACGACATTCGCATCCGCGGCACCCTCAAATCCGTCGACCAGTACCTG
AACATTAAGCTGGACGATGTGGACGTCTTGGATCTGGATAAATACCCGCA
TTTGTCGTCCGTAAAGAACATGTTTATTCGTGGTAGTGTGGTGCGGTATG
TTATGCTGCCGAGATCGGAGGTGGATATTGGGCTTTTGGAGGATGCGACG
AGGAGAGGTATGTTTCCTCATCCCTGTCCCCTTGATCTATTTGAAGGAAC
ATGCTTAGATGTTTCTGTATGTGTGTGTTTGGTTGTATGGGTTGCTAATG
ATTCGTTTGGTATATATAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTG
ATTTACGAATTGATTGATGGATTGTTGCTTTGATGGTTGGTTGATCAGGG
TTTTCTACGGATGGGATTGACTATTTCTTTTTTCTATTATGTATTTTTCT
TTTTCCTATTTCCTTCTTTTTTTCATTGCAGATTTAATCTTCACGATGTG
ATGATGTTTGTCGTTGTCATGCGGGTTCACTTTTATTTATGTTGCTGATA
TCCATGGCTAAACATGGCGTGGAGAAAGAGAGAGCGAGAAAGAAAAAAAA
GGAGAGCGGATTTACGTGGATGGAAAGCATCGGACTGGCTGTTCACCTCC
CATGATGGGGCTGGAATGGTTTTGGTCGGAGCTGCAGCTGTTATGATGAC
GATGACAATAGGTATACCTGCATGTTACATCTCTTCGGAAGATGTATATG
TAGTTGAGAGGACGAATACTGGCTACGAGATTATTGGGTAAAGGCGTGAG
TTATGTGTCTAGACAGAGTCTGCAGATAGTACTACCCAGTACCTACCTAC
TCAGTAGTAGTATAAAGACGAATGAAATATAAATAACAAAGCCCATTTAC
CA
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Coding sequence (CDS) from alignment at ch1:960194..961395+

>KJC3_000471-T1 ID=KJC3_000471-T1|Name=KJC3_000471-T1|organism=Aspergillus niger KJC3|type=CDS|length=891bp|location=Sequence derived from alignment at ch1:960194..961395+ (Aspergillus niger KJC3)
ATGCTCTTCTTCAGCTTCTTCAAGACCTTAACCAACCAAACGGTGACCAT
CGAACTCAAGAACGACATTCGCATCCGCGGCACCCTCAAATCCGTCGACC
AGTACCTGAACATTAAGCTGGACGATGTGGACGTCTTGGATCTGGATAAA
TACCCGCATTTGTCGTCCGTAAAGAACATGTTTATTCGTGGTAGTGTGGT
GCGGTATGTTATGCTGCCGAGATCGGAGGTGGATATTGGGCTTTTGGAGG
ATGCGACGAGGAGAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTGAATG
CTCTTCTTCAGCTTCTTCAAGACCTTAACCAACCAAACGGTGACCATCGA
ACTCAAGAACGACATTCGCATCCGCGGCACCCTCAAATCCGTCGACCAGT
ACCTGAACATTAAGCTGGACGATGTGGACGTCTTGGATCTGGATAAATAC
CCGCATTTGTCGTCCGTAAAGAACATGTTTATTCGTGGTAGTGTGGTGCG
GTATGTTATGCTGCCGAGATCGGAGGTGGATATTGGGCTTTTGGAGGATG
CGACGAGGAGAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTGAATGCTC
TTCTTCAGCTTCTTCAAGACCTTAACCAACCAAACGGTGACCATCGAACT
CAAGAACGACATTCGCATCCGCGGCACCCTCAAATCCGTCGACCAGTACC
TGAACATTAAGCTGGACGATGTGGACGTCTTGGATCTGGATAAATACCCG
CATTTGTCGTCCGTAAAGAACATGTTTATTCGTGGTAGTGTGGTGCGGTA
TGTTATGCTGCCGAGATCGGAGGTGGATATTGGGCTTTTGGAGGATGCGA
CGAGGAGAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM2KJC3_000471Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000471-T1KJC3_000471-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000471-T1.utr5p1KJC3_000471-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000471-T1.exon1KJC3_000471-T1.exon1Aspergillus niger KJC3exon
KJC3_000471-T1.exon2KJC3_000471-T1.exon2Aspergillus niger KJC3exon
KJC3_000471-T1.exon3KJC3_000471-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000471-T1.cdsKJC3_000471-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000471-T1.utr3p1KJC3_000471-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR016654
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductU6 snRNA-associated Sm-like protein LSm2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:960194..961395 +
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