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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:1093548..1098283- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000525-T2 ID=KJC3_000525-T2|Name=KJC3_000525-T2|organism=Aspergillus niger KJC3|type=mRNA|length=4736bp|location=Sequence derived from alignment at ch1:1093548..1098283- (Aspergillus niger KJC3)
CTTTCTCTTGCTGGCTTTCCTTCCTCCAGATCCACAAGCTGCAGTGCCGC
TGGCTGCAATACTGACCATCATACCTCTGGGCGATTCTCTTGTTCGTTGT
ACGGTGATTTCAGCGCCGTCGCATTCTACCCGTTGAGTCAGTGTCGCCTT
GCCATGATCATCATCTGACAACGGCGATGCAGCCTCCAGAAGGTGTGCAG
GTCGACCTGGGCAAGGCCCAGGTCATTGACCGCGTTCCCAAAGTTATCAA
GGAGTTGAAGTTTGGTGTTCTGTAAGCATGGCTCTGCTTCTCCCCGTTCT
ACCCCTCCTGGATCTCCGCTGCGGAGCAGTCAAGACTAATACCGCGCGCG
AATCGTCCAGGTCCAACGATGACATTGTCAGCCAAGGTGTGGTGGAAGTT
TCGGATCGCAAGTTCTTCGATCTCGATCATGATCGAGCGGTGGTAGCCAA
TGGTCCTCTCGATGCGCGCATGGGTATCTCCAACAAGACCTCCTCATGTC
AGACTTGTGGTGGCACTCTCCAGATTTGCAATGGACACTTCGGTCATGTC
CGGCTCGTGCTGCCGGCTTTCCACGTCGGTTACTTCAAGCGAGTCATTAC
TATTTTGCAGGAAGTGTGCAAGGAATGTTCGCGCATTCTGCTCCCCGAAG
CCGATCGCCGTGCCTATCTTCGTGAAATGCGTCGTCCTGGGTTGGATAAT
TTGCGGCGCGGCCAGATTGCGAAGCGGATCAACGAGCGGTGCCGTAAGAC
ACGCAACTGCGAGGCCTGTGGTGCGGTTAACGGTGTGGTGAAGAAAGCTG
GAACGAGCGCCCTCAAAATCACCCACGACAAATTCCGTGCATTCAACGCC
TCGACCTCCGTCAAGAAAGTTCCGCCGCCCAGCAAGATTGTTTTCGACCG
GTCATTCGACGAAGCCAGAACGTCCAATGCGGAGGTCGAGAAACACTACA
AGAAGGCCCAGGATGATATGAACGCTCTTCGCGTGCTGAACCTGTTCAAG
AAGATTTCCGATACCGATTGCGAGCTGCTTGGTTTGAACCCGAAGGAAGC
AAGACCGGAAATGTTCCTCTGGCAATTCATCCCCGCTCCTCCGGTGTGTA
TTCGTCCTTCCGTCGGTCAGGATGCGGCGTCCACCGAGGACGATTTGACA
GCCAAGCTAGGCGACATTGTCCAGAGCAATATCAACCTGAAAAACGCATT
GTTGAAGGGCGCACCGGTACAGACAATTATGGAATGCTGGGACTACATGC
AGCTACAGATTGCGGTGTATATCAACAGTGATGTGCCGGGTCTGAACAAG
GCAGACCTTGGAAAGCCCATTCGTGGTTTCGTGCAGCGATTGAAGGGTAA
GCAGGGTCGATTCCGTGGTAACTTGTCCGGAAAGCGTGTAGATTTCTCAG
GCCGTACTGTCATTTCCCCCGATCCCAACCTGCGAGTCGATGAGGTTGCG
GTCCCTGAATTGGTGGCCAAGAACATGACCTATCCCGAAGTTGTTACTCG
GTACAATAAAGAGAAGCTACAGCAGAGAGTCCGAAACGGCACGAAGAAGT
GGCCGGGTGCAAACTACATTATGAAAAAGGGCCAGACGTTCAAGCTCTTC
CTTAAGTATGGTAACCTGAACATGATTGCCGACCAACTGCAGGAGGGTGA
TGTTATTGAGCGCCACATCGAGGACGGTGATATTGTTCTGTTCAACCGAC
AGCCCTCTCTGCACAAGCTCAGTATTCTGTCTCACTTTGCCAAAGTTCGT
CCTCACCGGACCTTCCGACTGAATGAGTGTGTCTGTAACCCTTACAACGC
GGATTTCGACGGAGACGAGATGAACTTGCACGTGCCTCAGACGGAGGAGG
CGAGAGCCGAAGCGATGGAATTGATGGGAGTCAAGAACAACTTGGCCACG
CCCAAGAACGGAGAGCCGATTATTTCTGCCATTCAAGATTTCATCAGTGC
CGCCTACATTCTCAGTAGCAAGGACAACTTCTTCGACCGCCGCTCGTTCA
CCCAAATTTGTCTGTACATGCTGGGCCCGCAGACACGCTTCGACCTGCCC
CCTCCAGCTGTGCTTAAGCCTCAGATGTTGTGGACCGGAAAGCAGGTTTT
CAACATCCTCATGCGGCCGAACAAGGATGACCCCGTCTTGGTCAATTTGG
ATGCTGCGTGCAGACAGTTCAAGGCTCCCAAGGATGGTACGCCACGGGAT
CTGGACCCGAAGGATTCCTGGCTCGTCATCCGTAACTCCGAGGTGATGTG
TGGTGTGATGGACAAATCCACCATTGGTTCCGGAAAGAAAGACAACGTGT
TCTATATCATGCTGAGAGATTACGGGCCTGTGGCGGCTGCCGAGGGTATG
AACCGCCTGTCCAGGCTCTCAGCCCGCTGGTTCACAAACATGGGATTCTC
GATCGGTATCACCGACGTATATCCCAGCGAAAAGCTCCTACGTTCGAAGC
ATGACCTCGTCGAAACGGCGTACGCACAGTGTGACGAAGTCATTGCCAAG
TACAAGGCAGGCACACTGGAGAAGTATCCTGGTTGTGACGAGTTGCAGAC
CATGGAGAACCAACTGTCCGGTATTCTCAGTAAGGTCCGTCAGCAGGCAG
GAGACGAGTGTATCGCTCAGTTGAGCAAATACAACTCGCCTTTAATCATG
GCCACGTCCGGATCCAAGGGTTCCAGTATCAACGTATCCCAGATGGTTGC
CCTTGTCGGTCAGCAGATTATCGGTGGTCAGCGTGTGCAGGACGGCTTCC
AGGACCGTACCCTGCCGCACTTCCCCAAGAACGCTCGCCAGCCCCCGTCC
AAGGGTTTTGTCCGTAACAGTTTCTTCTCCGGACTGGAGCCCACGGAGTT
TATTTTCCACGCCATGTCCGGTCGTGAAGGTCTGGTCGATACGGCCGTCA
AGACCGCCGAGACGGGTTACATGTCTCGTCGGTTGATGAAGTCGCTTGAA
GATCTCTCGACCAGATACGATGATACCGTGCGTAACTCGTCCGCGGCCAT
TGTCCAGTTCCAGTACGGTGATGATAAGCTTGATCCCTTGGATATGGAAG
GTAAAGCCAAGCCTGTCCATTTCGACCGGACTTTCATCCACGCCGAGTCG
ACGACTTACAAGAACGACGAGCGGAGTTTGCTTCCGGCCGAGATCATGGA
GATTTGCGAAGAGATGCTTTCGAAGGAGCGCTCTAAGCTGGTGCGGAAGG
ATTTGATGGGCAACGAGCTCGGCTACATGGATCGGTCTGACCATGGTGTC
GATCAGTTCGAGAGTGCTCGTGACTTCCTCGAGTCTATCCAGCAATACGT
CGCTACGAAGGCAGACAAGCTGATCTCCCGCGGTGGTGACATCGACCCCA
ACGACGAGAGAAGTCAGAAGGGTCTGAACCACACCGGAAAGCTGACTGAG
CGCACGCTCCGCACTTTCATCTCGTCATGTTTGATGAAGTACAAGAAGGC
CCAGGTCGAGGCTGGCCACGCCGTCGGTGCAGTTGGTGCACAGTCCATTG
GTGAACCTGGTACGCAGATGACGCTGAAAACTTTCCACTTTGCTGGTGTC
GCCGGTATGAGTATCACGCAGGGTGTGCCCCGTATTAAGGAAATTATCAA
CGCGTCGAAGGAGATCAGTACGCCTGTTGTTGCTTGCGAGCTCGTCACGA
AGGACAATATCATCGCGGCGCGAATCGTCAAGGGACGTATTGAGAAGACC
TACTTGCGAGACATTATCCACTATGTCCGTGAGACATGGACGGGCAAGGA
AGCCTACATCACAGTGAAGATCAACTGGAAGACAATCCAGGACTTGGCGC
TCGAGCTGAAGATCGAGAACATCTTGTCGGCGATCAAGAACCACAAACGG
TTCAAGGCGGACGATCTGAAGTTCCGATGCTCGCGGTCCCACATTCACGT
CTACATGGACGTGGATCCGTCGACCAAGGCCAATCTGTCCAAGACGGAGA
TCGCCCACACCAGTGCCGATCCTTTCCTCCGTCTGAAGCACCTGAAGCGC
ATGCTCCCTGACATCCAAGTCCTGGGTCACCCCCAGGCCTTCCGTGCCAT
CATCCGAACCGACGAGACGTCTACCACCAACACGCTTCTGGTGGAAGGCT
ACGGTCTCCGGGAGTGTATGACAACGATGGGTGTGGACGGACTGCGCACG
TCAACCAACAACGTCATGGAGATGCGGGACGTTCTCGGTATCGAGGCGGC
GCGGACGACCATCGTGCAGGAAATCAGCGAGGTCATGAAGGACATGGACA
TTGATCCGCGACACATGCAGTTGCTGGCCGATGTCATGACCTACAAGGGT
GAAGTGCTGGGTATCACGCGATTCGGTCTCGCGAAGATGCGTGACTCCGT
CCTGCAGTTGGCGTCGTTCGAAAAGACGGCGGACCATCTGTTCGACGCCG
GTGGTGCGGGTCGCAGCGATCTCATCGAGGGTGTGTCCGAGTGTATCATT
ATGGGCAAGACGGTGTCGCTGGGAACGGGAGCGATGGAGGTGGTGCGCAA
GATGAACTTCTTCGAGGGACAGATCGGGGCACGCAAGACGACGTTCGAAG
ATACATGGACCGAGGTGTACGAGGCGCCATTGGAGAGAGCCAAGGCAGCT
CGACGCAAGCGATCATGATATACATAAAAGCACTCAAAAGAGAGGACTTG
TAAAAGGGACGGGTTAAAAGCATACCAGGCGTTGTATGTACTTGTGTACT
TTTAGCGATAGCAGCAACACTGCAATTTCACCTTCA back to topCoding sequence (CDS) from alignment at ch1:1093548..1098283- >KJC3_000525-T2 ID=KJC3_000525-T2|Name=KJC3_000525-T2|organism=Aspergillus niger KJC3|type=CDS|length=4149bp|location=Sequence derived from alignment at ch1:1093548..1098283- (Aspergillus niger KJC3)
ATGGGTATCTCCAACAAGACCTCCTCATGTCAGACTTGTGGTGGCACTCT
CCAGATTTGCAATGGACACTTCGGTCATGTCCGGCTCGTGCTGCCGGCTT
TCCACGTCGGTTACTTCAAGCGAGTCATTACTATTTTGCAGGAAGTGTGC
AAGGAATGTTCGCGCATTCTGCTCCCCGAAGCCGATCGCCGTGCCTATCT
TCGTGAAATGCGTCGTCCTGGGTTGGATAATTTGCGGCGCGGCCAGATTG
CGAAGCGGATCAACGAGCGGTGCCGTAAGACACGCAACTGCGAGGCCTGT
GGTGCGGTTAACGGTGTGGTGAAGAAAGCTGGAACGAGCGCCCTCAAAAT
CACCCACGACAAATTCCGTGCATTCAACGCCTCGACCTCCGTCAAGAAAG
TTCCGCCGCCCAGCAAGATTGTTTTCGACCGGTCATTCGACGAAGCCAGA
ACGTCCAATGCGGAGGTCGAGAAACACTACAAGAAGGCCCAGGATGATAT
GAACGCTCTTCGCGTGCTGAACCTGTTCAAGAAGATTTCCGATACCGATT
GCGAGCTGCTTGGTTTGAACCCGAAGGAAGCAAGACCGGAAATGTTCCTC
TGGCAATTCATCCCCGCTCCTCCGGTGTGTATTCGTCCTTCCGTCGGTCA
GGATGCGGCGTCCACCGAGGACGATTTGACAGCCAAGCTAGGCGACATTG
TCCAGAGCAATATCAACCTGAAAAACGCATTGTTGAAGGGCGCACCGGTA
CAGACAATTATGGAATGCTGGGACTACATGCAGCTACAGATTGCGGTGTA
TATCAACAGTGATGTGCCGGGTCTGAACAAGGCAGACCTTGGAAAGCCCA
TTCGTGGTTTCGTGCAGCGATTGAAGGGTAAGCAGGGTCGATTCCGTGGT
AACTTGTCCGGAAAGCGTGTAGATTTCTCAGGCCGTACTGTCATTTCCCC
CGATCCCAACCTGCGAGTCGATGAGGTTGCGGTCCCTGAATTGGTGGCCA
AGAACATGACCTATCCCGAAGTTGTTACTCGGTACAATAAAGAGAAGCTA
CAGCAGAGAGTCCGAAACGGCACGAAGAAGTGGCCGGGTGCAAACTACAT
TATGAAAAAGGGCCAGACGTTCAAGCTCTTCCTTAAGTATGGTAACCTGA
ACATGATTGCCGACCAACTGCAGGAGGGTGATGTTATTGAGCGCCACATC
GAGGACGGTGATATTGTTCTGTTCAACCGACAGCCCTCTCTGCACAAGCT
CAGTATTCTGTCTCACTTTGCCAAAGTTCGTCCTCACCGGACCTTCCGAC
TGAATGAGTGTGTCTGTAACCCTTACAACGCGGATTTCGACGGAGACGAG
ATGAACTTGCACGTGCCTCAGACGGAGGAGGCGAGAGCCGAAGCGATGGA
ATTGATGGGAGTCAAGAACAACTTGGCCACGCCCAAGAACGGAGAGCCGA
TTATTTCTGCCATTCAAGATTTCATCAGTGCCGCCTACATTCTCAGTAGC
AAGGACAACTTCTTCGACCGCCGCTCGTTCACCCAAATTTGTCTGTACAT
GCTGGGCCCGCAGACACGCTTCGACCTGCCCCCTCCAGCTGTGCTTAAGC
CTCAGATGTTGTGGACCGGAAAGCAGGTTTTCAACATCCTCATGCGGCCG
AACAAGGATGACCCCGTCTTGGTCAATTTGGATGCTGCGTGCAGACAGTT
CAAGGCTCCCAAGGATGGTACGCCACGGGATCTGGACCCGAAGGATTCCT
GGCTCGTCATCCGTAACTCCGAGGTGATGTGTGGTGTGATGGACAAATCC
ACCATTGGTTCCGGAAAGAAAGACAACGTGTTCTATATCATGCTGAGAGA
TTACGGGCCTGTGGCGGCTGCCGAGGGTATGAACCGCCTGTCCAGGCTCT
CAGCCCGCTGGTTCACAAACATGGGATTCTCGATCGGTATCACCGACGTA
TATCCCAGCGAAAAGCTCCTACGTTCGAAGCATGACCTCGTCGAAACGGC
GTACGCACAGTGTGACGAAGTCATTGCCAAGTACAAGGCAGGCACACTGG
AGAAGTATCCTGGTTGTGACGAGTTGCAGACCATGGAGAACCAACTGTCC
GGTATTCTCAGTAAGGTCCGTCAGCAGGCAGGAGACGAGTGTATCGCTCA
GTTGAGCAAATACAACTCGCCTTTAATCATGGCCACGTCCGGATCCAAGG
GTTCCAGTATCAACGTATCCCAGATGGTTGCCCTTGTCGGTCAGCAGATT
ATCGGTGGTCAGCGTGTGCAGGACGGCTTCCAGGACCGTACCCTGCCGCA
CTTCCCCAAGAACGCTCGCCAGCCCCCGTCCAAGGGTTTTGTCCGTAACA
GTTTCTTCTCCGGACTGGAGCCCACGGAGTTTATTTTCCACGCCATGTCC
GGTCGTGAAGGTCTGGTCGATACGGCCGTCAAGACCGCCGAGACGGGTTA
CATGTCTCGTCGGTTGATGAAGTCGCTTGAAGATCTCTCGACCAGATACG
ATGATACCGTGCGTAACTCGTCCGCGGCCATTGTCCAGTTCCAGTACGGT
GATGATAAGCTTGATCCCTTGGATATGGAAGGTAAAGCCAAGCCTGTCCA
TTTCGACCGGACTTTCATCCACGCCGAGTCGACGACTTACAAGAACGACG
AGCGGAGTTTGCTTCCGGCCGAGATCATGGAGATTTGCGAAGAGATGCTT
TCGAAGGAGCGCTCTAAGCTGGTGCGGAAGGATTTGATGGGCAACGAGCT
CGGCTACATGGATCGGTCTGACCATGGTGTCGATCAGTTCGAGAGTGCTC
GTGACTTCCTCGAGTCTATCCAGCAATACGTCGCTACGAAGGCAGACAAG
CTGATCTCCCGCGGTGGTGACATCGACCCCAACGACGAGAGAAGTCAGAA
GGGTCTGAACCACACCGGAAAGCTGACTGAGCGCACGCTCCGCACTTTCA
TCTCGTCATGTTTGATGAAGTACAAGAAGGCCCAGGTCGAGGCTGGCCAC
GCCGTCGGTGCAGTTGGTGCACAGTCCATTGGTGAACCTGGTACGCAGAT
GACGCTGAAAACTTTCCACTTTGCTGGTGTCGCCGGTATGAGTATCACGC
AGGGTGTGCCCCGTATTAAGGAAATTATCAACGCGTCGAAGGAGATCAGT
ACGCCTGTTGTTGCTTGCGAGCTCGTCACGAAGGACAATATCATCGCGGC
GCGAATCGTCAAGGGACGTATTGAGAAGACCTACTTGCGAGACATTATCC
ACTATGTCCGTGAGACATGGACGGGCAAGGAAGCCTACATCACAGTGAAG
ATCAACTGGAAGACAATCCAGGACTTGGCGCTCGAGCTGAAGATCGAGAA
CATCTTGTCGGCGATCAAGAACCACAAACGGTTCAAGGCGGACGATCTGA
AGTTCCGATGCTCGCGGTCCCACATTCACGTCTACATGGACGTGGATCCG
TCGACCAAGGCCAATCTGTCCAAGACGGAGATCGCCCACACCAGTGCCGA
TCCTTTCCTCCGTCTGAAGCACCTGAAGCGCATGCTCCCTGACATCCAAG
TCCTGGGTCACCCCCAGGCCTTCCGTGCCATCATCCGAACCGACGAGACG
TCTACCACCAACACGCTTCTGGTGGAAGGCTACGGTCTCCGGGAGTGTAT
GACAACGATGGGTGTGGACGGACTGCGCACGTCAACCAACAACGTCATGG
AGATGCGGGACGTTCTCGGTATCGAGGCGGCGCGGACGACCATCGTGCAG
GAAATCAGCGAGGTCATGAAGGACATGGACATTGATCCGCGACACATGCA
GTTGCTGGCCGATGTCATGACCTACAAGGGTGAAGTGCTGGGTATCACGC
GATTCGGTCTCGCGAAGATGCGTGACTCCGTCCTGCAGTTGGCGTCGTTC
GAAAAGACGGCGGACCATCTGTTCGACGCCGGTGGTGCGGGTCGCAGCGA
TCTCATCGAGGGTGTGTCCGAGTGTATCATTATGGGCAAGACGGTGTCGC
TGGGAACGGGAGCGATGGAGGTGGTGCGCAAGATGAACTTCTTCGAGGGA
CAGATCGGGGCACGCAAGACGACGTTCGAAGATACATGGACCGAGGTGTA
CGAGGCGCCATTGGAGAGAGCCAAGGCAGCTCGACGCAAGCGATCATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003899 | DNA-directed 5'-3' RNA polymerase activity |
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000525-T2.utr3p1 | KJC3_000525-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035698 |
| DBxref | InterPro:IPR035697 |
| DBxref | InterPro:IPR007081 |
| DBxref | InterPro:IPR007066 |
| DBxref | InterPro:IPR042102 |
| DBxref | InterPro:IPR007080 |
| DBxref | InterPro:IPR000722 |
| DBxref | InterPro:IPR007083 |
| DBxref | InterPro:IPR038120 |
| DBxref | InterPro:IPR006592 |
| DBxref | PFAM:PF04998 |
| DBxref | PFAM:PF05000 |
| DBxref | PFAM:PF04983 |
| DBxref | PFAM:PF00623 |
| DBxref | PFAM:PF04997 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:1093548..1098283 - |
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