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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:1262137..1265283- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000581-T1 ID=KJC3_000581-T1|Name=KJC3_000581-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3147bp|location=Sequence derived from alignment at ch1:1262137..1265283- (Aspergillus niger KJC3)
GGTGGATATTGCTAGTTCTTTCAGCTCCCTGTCCAGCCACCCCTGAACTG
CATCCGAGTTACGTAAAGGAAAGAATGTCAATGGTCAACCTCATCATCGT
GGACATCGTGGGCACTTCTAGCAACATCCAACAAGGTCCCGTCTTCATGT
CAGGGCTGCTGCTCTAGTTGCCTCATCTGCCGAGCTGGCCTGTCACCCCC
GGCTTTCGAACTCAATGGAGCGAGACCTACCAACGCAATGGAAGATGGGA
GAGAAACCTAGAGACGAGTACCCTCAGGAACAGAGAGCCGAGTACCTTGG
AATGGTGTCAGCCATCCGAAGTTTGCAATCCCGCCTGACACCGTTCAATC
AAATGGCCTTCCATTCTATGACTGTTTCGCATTACTCGATATAAACCCCT
CGGACAGCACATCGGAACACTCCCCATCACATCATGGGACCGGGGCTGCT
TTTTCTTTGCCTGGCCAGGATTTTCCCAGCGAACGGGGATTTGTGGGAGG
AGTTAAGAAATTCACTCATGGGTACCACCTCCCATATTAGATGCAAACCC
CAGACGATCCCAATCCAGACCAGCCGATAGTCGTCGTGGGCTCATCGGGT
CCCCGTTGCCGCAGCACACAGACCGCAGTTACTTCCTTTTCTTTCTCCTC
TACGACGTCGCTTCTAGGGGCCCCTAGATACGTGGGCGGCGAGCACACCG
ACATGTCCTGGAAAGGGGGAAAAGGTTTCTATTTCGGTTCATAGACCAGG
TTGTCCCTTTTATAAGACCTCCCTCCTACGTAGTCACAGCGTCTTCCTTT
AGGAACCTTCGTCAATTGTATTCCATCGTCATTCCCTCCTCCAATCCAAT
CTGATAAAGCTTGTGCAGTCTCCCCTGACCAACAGGGCTGATTAGGGTCA
TTGTGGGTGCGAATCTCGGAACCAAGCACTAGACCTGATCCACGGCTCTT
GTTGAATTTTTATTATTTTTTTTCCCGCCATTTTCGCGATTTCTCAATTA
TACTGCATCTGAATCAATTAAACCATTTATTACGATTATCTTTTTCTCTT
GCTGTTTTATTTTTATTTTTATTATTTTCTTTTTATTTGGGGGTGCAAAT
CGCTTGAAAAATCTCAGTTGTGTGAGGTCATTTTCCTTGCCTGGTGCGCC
AGACCGGCTCTGGGGGGGTGTCCACTTGTTCGGCCTCGTTGGAGCATTCG
GTGATTCTTATTATTCATATTATCCTCTCGACGAGGGAGATCCGTGCCTG
CAACGGAGGAGGCGCTGCTTTGCATTAACTAACAAAAACCTGGCTTTTGG
CGAGCAGCCCGGCTGTGTCGGTCTGGAGTTGGAGCACCTAATATCTCATC
ATCCGCCGCTGTCTCCAACATCATCGACCTTTTTTTCTGTGGTGGGATTC
CTTTTTTTCGTACTCCAGTAGTTTCCCGGGGCTTTCTTTTTGAACCACAG
CAGCAGCAACAGCAATAGCAACAGCAACAACAGCAACAACAGCAGCTGCC
TGACCCGTCATCATCTTGCACCATTGAATTCTTCGATTGCGGCATTGTCA
AATCAACTGTCCCCAGGCAATCATATCCCACTGAGCTATATAACTAAACT
CTCCGCCAACTGCTCCGTCTACTACCCCACTGTTCCATTCGTCGAAGTAC
CACCCAGACAACACCTGGAAATCTGTACTACGACTCAGGAAATTCTCTCG
ACAACTGCGACACACGACCACACCTGCTGCCTCACCAACCTCCACAACAT
CACTAGCTGGCAATAAATCGGCCTCGCATTGACTTGTTTTCCTATTCTGG
GAGGCCACCTGACCCGACTCCAGATCTGCTCGACTGCCCGACTTACTTCC
TTCGTGTTCGTCCGCTGGTCACTTTTCCCTCCCTGCTTTAATTTTACCCC
GCATACTTTTTTCTTCTTCTTCTTCTTTTACTTTTTAAAAGTCCCCCCTC
CTCTCTATATTCTCCTCCTATCGCGGAGAATTATCTCTTATACCCGCATT
CCCACCAATCCTCTCCCGCTATAACTCATGACACAACAAAGAAAGACCAT
TGCCGTGGTGAACGCTACGGGTCGCCAGGCGGCGTCTCTGATCCGTGTCG
CTTCGGCAGTGGGCCACCATGTTCGCGCTCAGATCCATTCACTCAAGGGC
CTCATCGCGGAGGAACTACAAAGCCTACCCAATGTCACTCTCTTCCAGGG
TCCCCTCCTGGGCAACACAGAGCTGATGGACTCCCTGTTCCAAGGGGCCA
ATCTTGCTTTCATCAACACCACCTCCCAGTCTGGCGATGAAGTCGCGATC
GGACGCGCCTTGGCCGATGCCGCCAAGCGAGCAGGAACCATTCAACACTA
CATCTATAGCAGTATGCCCGACCACTCTGTGCATGGACCATGGCCTCCGG
TGCCCCTTTGGGCTCCCAAGTTCACCGTGGAGAATTACGTTCGTCAACTC
GGTCTGCCCTCGACGTTCGTCTACGCCGGAATCTACAACAACAACTTTAC
GAGTCTACCATACCCCCTCTTCCAGATGGAGCTGATGCAGGACGGAAGCT
TTGAGTGGCACGCGCCTTTCGACCCCGATATTCCACTCCCCTGGCTGGAT
GCTGAGCATGACGTGGGACCGGCGCTGCTGCAGATTTTCAAGGACGGACC
CAAGAAGTGGAACGGCCATCGGTAGGTTTACCTCGGTCATTTATCGGGTG
ATGACATGGAGCTGATAGCTGATGATTCGCAGGATCGCCCTCACCTTCGA
GACGCTCTCCCCCAATCAGGTCTGTGCGGCATTTTCGCGCGCTCTCGGTC
GCCCATGCCGCTACGTCCGTGTGCCCAAGGTCGAAGTCAAGGTCAACATC
CCTCCCGGATATCGGGAACAACTGGAAGCAATTGAGGTGGTGTTTGGACA
ATGCGATGCACCCTACTTCCCGCAGCCCGAATTCTCCCGCCCTGCGGCCG
GGTCGCCGAAGGGCTTGGGCCCAGCCAATGGCAAAGGTGCGGGTGCGGGA
ATGATGCAGGGTCCCGGAGGGGTTATATCACTGCGTGTTACGGATGAGGC
CCGACACCTATGGCAGGGCTGGCGAGACATGGAGGAATATGCGCGCGAAG
TCTTTCCCGTGGAAGAGGAAGCGAACGGGCTGGATTGGATGTTGTGA back to topCoding sequence (CDS) from alignment at ch1:1262137..1265283- >KJC3_000581-T1 ID=KJC3_000581-T1|Name=KJC3_000581-T1|organism=Aspergillus niger KJC3|type=CDS|length=2118bp|location=Sequence derived from alignment at ch1:1262137..1265283- (Aspergillus niger KJC3)
GATCGCCCTCACCTTCGAGACGCTCTCCCCCAATCAGGTCTGTGCGGCAT
TTTCGCGCGCTCTCGGTCGCCCATGCCGCTACGTCCGTGTGCCCAAGGTC
GAAGTCAAGGTCAACATCCCTCCCGGATATCGGGAACAACTGGAAGCAAT
TGAGGTGGTGTTTGGACAATGCGATGCACCCTACTTCCCGCAGCCCGAAT
TCTCCCGCCCTGCGGCCGGGTCGCCGAAGGGCTTGGGCCCAGCCAATGGC
AAAGGTGCGGGTGCGGGAATGATGCAGGGTCCCGGAGGGGTTATATCACT
GCGTGTTACGGATGAGGCCCGACACCTATGGCAGGGCTGGCGAGACATGG
AGGAATATGCGCGCGAAGTCTTTCCCGTGGAAGAGGAAGCGAACGGGCTG
GATTGGATGTTGTGAATGACACAACAAAGAAAGACCATTGCCGTGGTGAA
CGCTACGGGTCGCCAGGCGGCGTCTCTGATCCGTGTCGCTTCGGCAGTGG
GCCACCATGTTCGCGCTCAGATCCATTCACTCAAGGGCCTCATCGCGGAG
GAACTACAAAGCCTACCCAATGTCACTCTCTTCCAGGGTCCCCTCCTGGG
CAACACAGAGCTGATGGACTCCCTGTTCCAAGGGGCCAATCTTGCTTTCA
TCAACACCACCTCCCAGTCTGGCGATGAAGTCGCGATCGGACGCGCCTTG
GCCGATGCCGCCAAGCGAGCAGGAACCATTCAACACTACATCTATAGCAG
TATGCCCGACCACTCTGTGCATGGACCATGGCCTCCGGTGCCCCTTTGGG
CTCCCAAGTTCACCGTGGAGAATTACGTTCGTCAACTCGGTCTGCCCTCG
ACGTTCGTCTACGCCGGAATCTACAACAACAACTTTACGAGTCTACCATA
CCCCCTCTTCCAGATGGAGCTGATGCAGGACGGAAGCTTTGAGTGGCACG
CGCCTTTCGACCCCGATATTCCACTCCCCTGGCTGGATGCTGAGCATGAC
GTGGGACCGGCGCTGCTGCAGATTTTCAAGGACGGACCCAAGAAGTGGAA
CGGCCATCGGATCGCCCTCACCTTCGAGACGCTCTCCCCCAATCAGGTCT
GTGCGGCATTTTCGCGCGCTCTCGGTCGCCCATGCCGCTACGTCCGTGTG
CCCAAGGTCGAAGTCAAGGTCAACATCCCTCCCGGATATCGGGAACAACT
GGAAGCAATTGAGGTGGTGTTTGGACAATGCGATGCACCCTACTTCCCGC
AGCCCGAATTCTCCCGCCCTGCGGCCGGGTCGCCGAAGGGCTTGGGCCCA
GCCAATGGCAAAGGTGCGGGTGCGGGAATGATGCAGGGTCCCGGAGGGGT
TATATCACTGCGTGTTACGGATGAGGCCCGACACCTATGGCAGGGCTGGC
GAGACATGGAGGAATATGCGCGCGAAGTCTTTCCCGTGGAAGAGGAAGCG
AACGGGCTGGATTGGATGTTGTGAATGACACAACAAAGAAAGACCATTGC
CGTGGTGAACGCTACGGGTCGCCAGGCGGCGTCTCTGATCCGTGTCGCTT
CGGCAGTGGGCCACCATGTTCGCGCTCAGATCCATTCACTCAAGGGCCTC
ATCGCGGAGGAACTACAAAGCCTACCCAATGTCACTCTCTTCCAGGGTCC
CCTCCTGGGCAACACAGAGCTGATGGACTCCCTGTTCCAAGGGGCCAATC
TTGCTTTCATCAACACCACCTCCCAGTCTGGCGATGAAGTCGCGATCGGA
CGCGCCTTGGCCGATGCCGCCAAGCGAGCAGGAACCATTCAACACTACAT
CTATAGCAGTATGCCCGACCACTCTGTGCATGGACCATGGCCTCCGGTGC
CCCTTTGGGCTCCCAAGTTCACCGTGGAGAATTACGTTCGTCAACTCGGT
CTGCCCTCGACGTTCGTCTACGCCGGAATCTACAACAACAACTTTACGAG
TCTACCATACCCCCTCTTCCAGATGGAGCTGATGCAGGACGGAAGCTTTG
AGTGGCACGCGCCTTTCGACCCCGATATTCCACTCCCCTGGCTGGATGCT
GAGCATGACGTGGGACCGGCGCTGCTGCAGATTTTCAAGGACGGACCCAA
GAAGTGGAACGGCCATCG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000581-T1.utr5p1 | KJC3_000581-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR008030 |
| DBxref | PFAM:PF05368 |
| DBxref | PFAM:PF13460 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:1262137..1265283 - |
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