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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:1297479..1299434+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000591-T1 ID=KJC3_000591-T1|Name=KJC3_000591-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1956bp|location=Sequence derived from alignment at ch1:1297479..1299434+ (Aspergillus niger KJC3)
CTGCAATATGATCAACTCTAGCTGCCCAGTTCAACATGCATGCTCTGGAC
TGACCTTTCAATTCCTCTTGCCTTCAATATGCAGTCCTTCCTTCAGTATC
GACGTCTGCGCAGACACCTACACGAAAGTATCAAGATACACGGCCCCGCT
GCCGCTGGAGATCCTAATTCACAACCATCTGGTGACATCCTTGAAGACTA
TGAAGACGCTCGGCTCGACAGGCAACATTTAACGAACCGTCCAAGCGCTG
CTGTCCCTTCCTCTTCTCGTAACTCCATCTCATCGCAAGGAATGCCTGGG
GTGGTGCTGCAGAACGGGCGAAGAGTGACTGTGCCAGGTGTTAGCGTTCA
TTCTGCAACCGATGTTGAACTCACCAACGGGGAGGCTATCTTCATAGTGG
GATTCGATGGCCCAGGCGACCCATTCAACCCGAAGAACTGGCCTGTGAGA
CAGAAATGGACGACGTTAGGTATTGTTGGCACAACGGGCTTTCTTGTGGG
GTGGGCTTCCTCGATCGATTCTGGAGTCATCAAACAGGGAGAAGAGGCGT
TCGGGGTCAGTGAAGTGACTGAGTCTCTTGCCACTGCGCTTTATCTAGTT
GCATTCGGATTTGGATCTCTTGTGGCAGCACCTTTCTCGGAAACTGTGGG
ACGCAACCCCGTCTACCTAGTGACCTTGTCACTTCTTATGATTTTCATCA
TGGCCTCCGGTCTATCTCCAAATCTAGGCGCCCAGTTGGCATTCCGTTTC
ATCGCTGGACTATTCGGATGCACGCCGCTGACTACATTCGGTGGGAGTAT
GTCGGACATCTTCGACCTTCTAGATCGCACATATGCCTTTCCGGTGTGCT
GTGCGTTGTCTTTCTTGGGGCCTTTCCTCGCCCCAATGGTCGGTGCGTTC
ATTGGCCAAAGCTCTGTCATATCCTGGCGTTGGTCAGAGTGGACATCTCT
GATACTTGCTGGGCTTATTACGGCCTCTATCTTCTTCTTTGTACCCGAGA
CCTACGGGCCAGTACTTCTGCAGTGGAAGGCTCGCCAACTACGCACCATC
ACCGGCGACCCTCGTTTCATGGCCGAGATCGAATTGCGCCAAACCACCCT
ACCCATCCGATTAATGCATAGCTGCTCGCGCCCCTTCAAGCTATTCTTCC
AGGAGATTATGGTAGCTCTTTTTACGATGTACTTGGTGGTCGTATACATC
GTGCTTTTCGGCTTTCTAACGGGTTACGAGTTCATATACGGTCGCACATA
TGGTTTCTCACAGGGCTCAGTGGGACTGACATATATTGGAATGAATGTGG
GATTTTTGATTGCACTCGCCATTGTTCCGCATGTCTACCTGTCTTATAAG
AGACGACTCCAGACAGCCATCGCTAGCGGCAAACCCAGTCTACCACCCGA
AGAGCGACTCTGGTTCGCCATGTATGGCGCACCGTGGCTTCCGATATCTC
TTTTCTGGATGGGGTGGACCAGTTATCCGTCCGTCTCGTACTGGTCACCT
CTGATCGCATCTGTGGCGTTCGGGTTCTCGGTGCAGGGCATTTTCATAAG
CAGCTATCAGTATTTGATCGATACGTATGAGATATTTGCTGCTAGTGCTC
TTGTGAGTGCGACATTTATGCGATATATCGCCGCAGGAGCTATGGTTATT
GTGTCCATTCCAATGTACACTAACCTGGGTGTTCATTGGTCGCTTACCCT
GCTGGGATGTATCTCCCTACTGATGACGCCGGTCCCATACATCTTCTATA
GATTCGGACATGCTATTCGCCGAAGGAGCAAGTCTGCCGCAGCATAGCAG
ACTTCAGGCTATTGCTCTATGCGGTGAGCCTTAAAGATTCAGCCTCAATG
AACTAGCACGAGCATGCTCAATACTCAATACCTACAGAGCATTAGGAATA
TGGGATATCAGACGGTTATGTAAGATGCGGTAGATCGTATAGATGTTAGA
ACTAAG back to topCoding sequence (CDS) from alignment at ch1:1297479..1299434+ >KJC3_000591-T1 ID=KJC3_000591-T1|Name=KJC3_000591-T1|organism=Aspergillus niger KJC3|type=CDS|length=1758bp|location=Sequence derived from alignment at ch1:1297479..1299434+ (Aspergillus niger KJC3)
ATGCTCTGGACTGACCTTTCAATTCCTCTTGCCTTCAATATGCAGTCCTT
CCTTCAGTATCGACGTCTGCGCAGACACCTACACGAAAGTATCAAGATAC
ACGGCCCCGCTGCCGCTGGAGATCCTAATTCACAACCATCTGGTGACATC
CTTGAAGACTATGAAGACGCTCGGCTCGACAGGCAACATTTAACGAACCG
TCCAAGCGCTGCTGTCCCTTCCTCTTCTCGTAACTCCATCTCATCGCAAG
GAATGCCTGGGGTGGTGCTGCAGAACGGGCGAAGAGTGACTGTGCCAGGT
GTTAGCGTTCATTCTGCAACCGATGTTGAACTCACCAACGGGGAGGCTAT
CTTCATAGTGGGATTCGATGGCCCAGGCGACCCATTCAACCCGAAGAACT
GGCCTGTGAGACAGAAATGGACGACGTTAGGTATTGTTGGCACAACGGGC
TTTCTTGTGGGGTGGGCTTCCTCGATCGATTCTGGAGTCATCAAACAGGG
AGAAGAGGCGTTCGGGGTCAGTGAAGTGACTGAGTCTCTTGCCACTGCGC
TTTATCTAGTTGCATTCGGATTTGGATCTCTTGTGGCAGCACCTTTCTCG
GAAACTGTGGGACGCAACCCCGTCTACCTAGTGACCTTGTCACTTCTTAT
GATTTTCATCATGGCCTCCGGTCTATCTCCAAATCTAGGCGCCCAGTTGG
CATTCCGTTTCATCGCTGGACTATTCGGATGCACGCCGCTGACTACATTC
GGTGGGAGTATGTCGGACATCTTCGACCTTCTAGATCGCACATATGCCTT
TCCGGTGTGCTGTGCGTTGTCTTTCTTGGGGCCTTTCCTCGCCCCAATGG
TCGGTGCGTTCATTGGCCAAAGCTCTGTCATATCCTGGCGTTGGTCAGAG
TGGACATCTCTGATACTTGCTGGGCTTATTACGGCCTCTATCTTCTTCTT
TGTACCCGAGACCTACGGGCCAGTACTTCTGCAGTGGAAGGCTCGCCAAC
TACGCACCATCACCGGCGACCCTCGTTTCATGGCCGAGATCGAATTGCGC
CAAACCACCCTACCCATCCGATTAATGCATAGCTGCTCGCGCCCCTTCAA
GCTATTCTTCCAGGAGATTATGGTAGCTCTTTTTACGATGTACTTGGTGG
TCGTATACATCGTGCTTTTCGGCTTTCTAACGGGTTACGAGTTCATATAC
GGTCGCACATATGGTTTCTCACAGGGCTCAGTGGGACTGACATATATTGG
AATGAATGTGGGATTTTTGATTGCACTCGCCATTGTTCCGCATGTCTACC
TGTCTTATAAGAGACGACTCCAGACAGCCATCGCTAGCGGCAAACCCAGT
CTACCACCCGAAGAGCGACTCTGGTTCGCCATGTATGGCGCACCGTGGCT
TCCGATATCTCTTTTCTGGATGGGGTGGACCAGTTATCCGTCCGTCTCGT
ACTGGTCACCTCTGATCGCATCTGTGGCGTTCGGGTTCTCGGTGCAGGGC
ATTTTCATAAGCAGCTATCAGTATTTGATCGATACGTATGAGATATTTGC
TGCTAGTGCTCTTGTGAGTGCGACATTTATGCGATATATCGCCGCAGGAG
CTATGGTTATTGTGTCCATTCCAATGTACACTAACCTGGGTGTTCATTGG
TCGCTTACCCTGCTGGGATGTATCTCCCTACTGATGACGCCGGTCCCATA
CATCTTCTATAGATTCGGACATGCTATTCGCCGAAGGAGCAAGTCTGCCG
CAGCATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000591-T1.utr5p1 | KJC3_000591-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000591-T1.utr3p1 | KJC3_000591-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_1.5 |
| Note | SMCOG1169:sugar transport protein |
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR011701 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:1297479..1299434 + |
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