You are here

Home

KJC3_000627-T1, KJC3_000627-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000627-T1
Unique NameKJC3_000627-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:1403216..1404344+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000627-T1 ID=KJC3_000627-T1|Name=KJC3_000627-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1129bp|location=Sequence derived from alignment at ch1:1403216..1404344+ (Aspergillus niger KJC3)
CTCCGCCCATCTTTGTCTCTCTATCCTCAATACTAGTACCAATTCTCCCC
GGTTCGCGACACAACAGCTTCACAGGGAGTAATTCTCCCTATATTTTATT
CTCCCCATCCTATCTCCAGTCCCGATTTCTCCTTACAAGAGGGACCAAGG
GAGACAATGCATTCCACCCTCAACCGCGCCCAAGGCGTCTTCGGCTTCTT
CACGACAGTCGCTCTCTTCGTCGCCGGTCTCGCGGCTCTCAGCGTGTTTC
TCTATCCTACTGACGATGTGACATCCAGTGTGAAGTTGCGCGATGTGAAA
GTGTACGTGTACCATCTTTCTCCAATCGAATCCAATCCCACCCAATCCAA
TACCTACTACAACAACAACAACACAACTACCCCCATAAGCAAGAAGAATG
GAATAACTAACACAACCAACCCAACAGAACAAAAGGCCGTCCCCACTACT
ACAGCACGCGAAAGGAAGAATACGCCGCCATGAAATTCGACCTAGACGCT
GGTACTTCCATCCCTCCCCCCTCCCCCCTGCTCCTCAACTTCCCCAACAC
CACCACCACCACTACACTAATACTAACCATTCCCTCAATGAACCCAAAGA
CTTAACCCCCCTCTTCAACTGGAACACCAAACAACTCTTCGTCTACGTCT
ACGCCACCTACCCTTCCGACCCCTCGAATCCAACCACCTCCGCGCCCTCC
CACTCCGTCATCTGGGACACTATCATCCCCGCCCCGGAGTCGCCTTACTC
CTTTAATGCCCTGCGCGAGAAGTTCTTCCCTTCTGCATCATCTGCGAACA
AGAAGCGCAGCAGCACGAAGAAGACGTCCACTACTAGCAAAACTGCCAAG
AAGGCATCTGAGCCCGGGAAGCTGAGACTCCGCGACCAGAGAGCGAAGTA
CTCTATCGGAGATGTTTCGGGGAAGATGGCCGAACGGGAGAATGTCACTC
TTTCTGTGGGGTGGAATGTGCAGCCGTGGGTTGGGGCGCTGTGGTGGGCT
CCGGAGACTGGGGGTGCGATGAGGACGAAGGGCGATGTCGGGACGAGTAA
GGCTTTTGGGCTGCCGGCGCTGAAGGGGAGGAATGTTGGGACTGCTTCTG
CTTCTGCTGCTGGTGCCGGGGCGGCGTAG
back to top

Coding sequence (CDS) from alignment at ch1:1403216..1404344+

>KJC3_000627-T1 ID=KJC3_000627-T1|Name=KJC3_000627-T1|organism=Aspergillus niger KJC3|type=CDS|length=2250bp|location=Sequence derived from alignment at ch1:1403216..1404344+ (Aspergillus niger KJC3)
ATGCATTCCACCCTCAACCGCGCCCAAGGCGTCTTCGGCTTCTTCACGAC
AGTCGCTCTCTTCGTCGCCGGTCTCGCGGCTCTCAGCGTGTTTCTCTATC
CTACTGACGATGTGACATCCAGTGTGAAGTTGCGCGATGTGAAAGTAACA
AAAGGCCGTCCCCACTACTACAGCACGCGAAAGGAAGAATACGCCGCCAT
GAAATTCGACCTAGACGCTGACTTAACCCCCCTCTTCAACTGGAACACCA
AACAACTCTTCGTCTACGTCTACGCCACCTACCCTTCCGACCCCTCGAAT
CCAACCACCTCCGCGCCCTCCCACTCCGTCATCTGGGACACTATCATCCC
CGCCCCGGAGTCGCCTTACTCCTTTAATGCCCTGCGCGAGAAGTTCTTCC
CTTCTGCATCATCTGCGAACAAGAAGCGCAGCAGCACGAAGAAGACGTCC
ACTACTAGCAAAACTGCCAAGAAGGCATCTGAGCCCGGGAAGCTGAGACT
CCGCGACCAGAGAGCGAAGTACTCTATCGGAGATGTTTCGGGGAAGATGG
CCGAACGGGAGAATGTCACTCTTTCTGTGGGGTGGAATGTGCAGCCGTGG
GTTGGGGCGCTGTGGTGGGCTCCGGAGACTGGGGGTGCGATGAGGACGAA
GGGCGATGTCGGGACGAGTAAGGCTTTTGGGCTGCCGGCGCTGAAGGGGA
GGAATGTTGGGACTGCTTCTGCTTCTGCTGCTGGTGCCGGGGCGGCGTAG
ATGCATTCCACCCTCAACCGCGCCCAAGGCGTCTTCGGCTTCTTCACGAC
AGTCGCTCTCTTCGTCGCCGGTCTCGCGGCTCTCAGCGTGTTTCTCTATC
CTACTGACGATGTGACATCCAGTGTGAAGTTGCGCGATGTGAAAGTAACA
AAAGGCCGTCCCCACTACTACAGCACGCGAAAGGAAGAATACGCCGCCAT
GAAATTCGACCTAGACGCTGACTTAACCCCCCTCTTCAACTGGAACACCA
AACAACTCTTCGTCTACGTCTACGCCACCTACCCTTCCGACCCCTCGAAT
CCAACCACCTCCGCGCCCTCCCACTCCGTCATCTGGGACACTATCATCCC
CGCCCCGGAGTCGCCTTACTCCTTTAATGCCCTGCGCGAGAAGTTCTTCC
CTTCTGCATCATCTGCGAACAAGAAGCGCAGCAGCACGAAGAAGACGTCC
ACTACTAGCAAAACTGCCAAGAAGGCATCTGAGCCCGGGAAGCTGAGACT
CCGCGACCAGAGAGCGAAGTACTCTATCGGAGATGTTTCGGGGAAGATGG
CCGAACGGGAGAATGTCACTCTTTCTGTGGGGTGGAATGTGCAGCCGTGG
GTTGGGGCGCTGTGGTGGGCTCCGGAGACTGGGGGTGCGATGAGGACGAA
GGGCGATGTCGGGACGAGTAAGGCTTTTGGGCTGCCGGCGCTGAAGGGGA
GGAATGTTGGGACTGCTTCTGCTTCTGCTGCTGGTGCCGGGGCGGCGTAG
ATGCATTCCACCCTCAACCGCGCCCAAGGCGTCTTCGGCTTCTTCACGAC
AGTCGCTCTCTTCGTCGCCGGTCTCGCGGCTCTCAGCGTGTTTCTCTATC
CTACTGACGATGTGACATCCAGTGTGAAGTTGCGCGATGTGAAAGTAACA
AAAGGCCGTCCCCACTACTACAGCACGCGAAAGGAAGAATACGCCGCCAT
GAAATTCGACCTAGACGCTGACTTAACCCCCCTCTTCAACTGGAACACCA
AACAACTCTTCGTCTACGTCTACGCCACCTACCCTTCCGACCCCTCGAAT
CCAACCACCTCCGCGCCCTCCCACTCCGTCATCTGGGACACTATCATCCC
CGCCCCGGAGTCGCCTTACTCCTTTAATGCCCTGCGCGAGAAGTTCTTCC
CTTCTGCATCATCTGCGAACAAGAAGCGCAGCAGCACGAAGAAGACGTCC
ACTACTAGCAAAACTGCCAAGAAGGCATCTGAGCCCGGGAAGCTGAGACT
CCGCGACCAGAGAGCGAAGTACTCTATCGGAGATGTTTCGGGGAAGATGG
CCGAACGGGAGAATGTCACTCTTTCTGTGGGGTGGAATGTGCAGCCGTGG
GTTGGGGCGCTGTGGTGGGCTCCGGAGACTGGGGGTGCGATGAGGACGAA
GGGCGATGTCGGGACGAGTAAGGCTTTTGGGCTGCCGGCGCTGAAGGGGA
GGAATGTTGGGACTGCTTCTGCTTCTGCTGCTGGTGCCGGGGCGGCGTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005787signal peptidase complex
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006465signal peptide processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000627KJC3_000627Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000627-T1.utr5p1KJC3_000627-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000627-T1.exon1KJC3_000627-T1.exon1Aspergillus niger KJC3exon
KJC3_000627-T1.exon2KJC3_000627-T1.exon2Aspergillus niger KJC3exon
KJC3_000627-T1.exon3KJC3_000627-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000627-T1.cdsKJC3_000627-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000627-T1KJC3_000627-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09264VC6
DBxrefInterPro:IPR007653
DBxrefPFAM:PF04573
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:1403216..1404344 +
Powered by Drupal