|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:1420564..1422499- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000634-T1 ID=KJC3_000634-T1|Name=KJC3_000634-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1936bp|location=Sequence derived from alignment at ch1:1420564..1422499- (Aspergillus niger KJC3)
CCTCTCACTCATTCTCAACAACAACCTGCCCAGCAATGGCATCCCATCAA
CTCGCCATTGCCAAGGCCTCCTTCTCCGCAGGACTCCTGCGGCCAGACCC
GACGTCCGTCGCGCGCGACGAAATCACAGCCTTCCACACCAGCCTAGACC
GGGCGCTATCGCATTGCACCCCGGCAAACATCCAGGTTTGAACCGATGCG
TCCTAACCCACTGGCCAATACCCCAGAAGTACTAAAATAATGTTCTCTTT
TGCGCACCCCCTAGACCTGCAAACAATGGCTCCTGGAATACGTCGTCTCG
TCAGGTAACCGCGTAGGCGGATGGGCCAAATACCTAGCTGCGTTGTCTGG
ATCTTTCGAATCGTCATCATCCACACCATCGCCGGCCGAGACTGGTGGGA
AAAGGTCGACATCAACATCTGGCAAGCGAAAACGCCTTCATATTTTATAT
CTGCTGAATGATGTGCTGCATCATACGAAATACCATCTGGATACGACCGC
CGCGTTCAGCACATTGAGCGGATCGCTGCAGCCGCGTGTGGTCGAGCTGT
TGGGCTACGCAGCGTCGTATGATCGCGAGAAGAACCCGAAGCATCATCGT
CGATTGGATGAGTTGCTCGATATCTGGGAGGAGAACCGCTATTACGGGAG
TGATTATGTGAATAAGCTACGAGAGGTGGTCAAGAATGCTTCGGTGTCCG
GTCCGGTCAAGACGTCGCTAAGTGTCGAGGAAAGTAATGTGGATTTCTCA
GGAGCTGGTGCGAAGCCAATGCCCTCGGGCAAGGGTGTCCCGTTCGTCAT
GCCGGCTACGCATGGTGATCCATCTATGCCCTACTACGACCTACCTGCCG
GAAACCTCGTTCCGCATATCATCCCAGATTCGACGGTACCGCTGCGGCCG
GAGTCGATCAAGCCGCTGCAGTTCTTGGCTGGACCGGCGGATGAGAATCT
TGTCGTGGCGCTGAAGAAGTTCCTCAAGGATGTGGATCGGATATATGGGA
CTGGAGAGCCGGAGCACGAAGAGGACGAGGTTGTGGATATTGATGATCTA
GGCCAGGTGGTCGTCCGCGATGCCGATGGGGAGGTAATCGAGGGAGAGAC
ATACTACGGATGGTCACGGTCATTCTGCCAACAGATGAAGAAGCGACAGG
CGAAGGGAGACATGAGTCGCAGCCGGAGCCGCAGTCGCAGCCCCCTCAAG
CGCCGACGATACAGCGACAGCGCCAGCGACTGGAGTTCTCGTTCACGGTC
ACGATCTCGTTCACCACAGCGCAGATCACGCCGGCGTGATTCCCGATCCC
GAACACGGTCTCCATACCGACCTCGCAGTGCATCTCGGTCCAAATCGCGG
GAGCGATCCAAGTCCTATTCTCCGCGTCCGCCAGCTCCACGATCCATCCC
TCCTCCGCCTGAATACCATCATCAACCCCAATACCCCCCACCACATAATG
CATATGGCAATACAGCACCGCCACCTCCTCCGCCTCCGGTAGGATATCAT
GCACCACCACCGCCGCCACCGCAAATGGGATACCCTTCGGCCGGCGGCGT
ACCACCGCATTTCGCTTTCCCGCCGGGCGGACCGGCACCGCCTCCGCCTC
CGCCCCCGAACTATCAGGGAACTTGGCCGCCACCACCGCCGCCTGCGATG
AACCTTGGGGCAGCACATCCACCACCGCCGCCGCCGCCGCATGCTGCGCA
TCAAGGGTCGCATTTTCCGCCGCCGTACGGACAGGGTCAGTATGTGCAGC
AGATGCCACCGGGGTCATATCATTTCCCTCCGCCGCATCCAGGGAGGGGA
GGATGGTATGGTGGAGGTGGAGGAGGACGAGGTGGACAGGGCTGGCGCTG
ATATCAACTCAACTATTGTACTGATATAACACTACTTTATGCCATATATC
ATTAATGAACGACAAATGACAGTCGACTAATCCTAC back to topCoding sequence (CDS) from alignment at ch1:1420564..1422499- >KJC3_000634-T1 ID=KJC3_000634-T1|Name=KJC3_000634-T1|organism=Aspergillus niger KJC3|type=CDS|length=3474bp|location=Sequence derived from alignment at ch1:1420564..1422499- (Aspergillus niger KJC3)
ACCTGCAAACAATGGCTCCTGGAATACGTCGTCTCGTCAGGTAACCGCGT
AGGCGGATGGGCCAAATACCTAGCTGCGTTGTCTGGATCTTTCGAATCGT
CATCATCCACACCATCGCCGGCCGAGACTGGTGGGAAAAGGTCGACATCA
ACATCTGGCAAGCGAAAACGCCTTCATATTTTATATCTGCTGAATGATGT
GCTGCATCATACGAAATACCATCTGGATACGACCGCCGCGTTCAGCACAT
TGAGCGGATCGCTGCAGCCGCGTGTGGTCGAGCTGTTGGGCTACGCAGCG
TCGTATGATCGCGAGAAGAACCCGAAGCATCATCGTCGATTGGATGAGTT
GCTCGATATCTGGGAGGAGAACCGCTATTACGGGAGTGATTATGTGAATA
AGCTACGAGAGGTGGTCAAGAATGCTTCGGTGTCCGGTCCGGTCAAGACG
TCGCTAAGTGTCGAGGAAAGTAATGTGGATTTCTCAGGAGCTGGTGCGAA
GCCAATGCCCTCGGGCAAGGGTGTCCCGTTCGTCATGCCGGCTACGCATG
GTGATCCATCTATGCCCTACTACGACCTACCTGCCGGAAACCTCGTTCCG
CATATCATCCCAGATTCGACGGTACCGCTGCGGCCGGAGTCGATCAAGCC
GCTGCAGTTCTTGGCTGGACCGGCGGATGAGAATCTTGTCGTGGCGCTGA
AGAAGTTCCTCAAGGATGTGGATCGGATATATGGGACTGGAGAGCCGGAG
CACGAAGAGGACGAGGTTGTGGATATTGATGATCTAGGCCAGGTGGTCGT
CCGCGATGCCGATGGGGAGGTAATCGAGGGAGAGACATACTACGGATGGT
CACGGTCATTCTGCCAACAGATGAAGAAGCGACAGGCGAAGGGAGACATG
AGTCGCAGCCGGAGCCGCAGTCGCAGCCCCCTCAAGCGCCGACGATACAG
CGACAGCGCCAGCGACTGGAGTTCTCGTTCACGGTCACGATCTCGTTCAC
CACAGCGCAGATCACGCCGGCGTGATTCCCGATCCCGAACACGGTCTCCA
TACCGACCTCGCAGTGCATCTCGGTCCAAATCGCGGGAGCGATCCAAGTC
CTATTCTCCGCGTCCGCCAGCTCCACGATCCATCCCTCCTCCGCCTGAAT
ACCATCATCAACCCCAATACCCCCCACCACATAATGCATATGGCAATACA
GCACCGCCACCTCCTCCGCCTCCGGTAGGATATCATGCACCACCACCGCC
GCCACCGCAAATGGGATACCCTTCGGCCGGCGGCGTACCACCGCATTTCG
CTTTCCCGCCGGGCGGACCGGCACCGCCTCCGCCTCCGCCCCCGAACTAT
CAGGGAACTTGGCCGCCACCACCGCCGCCTGCGATGAACCTTGGGGCAGC
ACATCCACCACCGCCGCCGCCGCCGCATGCTGCGCATCAAGGGTCGCATT
TTCCGCCGCCGTACGGACAGGGTCAGTATGTGCAGCAGATGCCACCGGGG
TCATATCATTTCCCTCCGCCGCATCCAGGGAGGGGAGGATGGTATGGTGG
AGGTGGAGGAGGACGAGGTGGACAGGGCTGGCGCTGAATGGCATCCCATC
AACTCGCCATTGCCAAGGCCTCCTTCTCCGCAGGACTCCTGCGGCCAGAC
CCGACGTCCGTCGCGCGCGACGAAATCACAGCCTTCCACACCAGCCTAGA
CCGGGCGCTATCGCATTGCACCCCGGCAAACATCCAGACCTGCAAACAAT
GGCTCCTGGAATACGTCGTCTCGTCAGGTAACCGCGTAGGCGGATGGGCC
AAATACCTAGCTGCGTTGTCTGGATCTTTCGAATCGTCATCATCCACACC
ATCGCCGGCCGAGACTGGTGGGAAAAGGTCGACATCAACATCTGGCAAGC
GAAAACGCCTTCATATTTTATATCTGCTGAATGATGTGCTGCATCATACG
AAATACCATCTGGATACGACCGCCGCGTTCAGCACATTGAGCGGATCGCT
GCAGCCGCGTGTGGTCGAGCTGTTGGGCTACGCAGCGTCGTATGATCGCG
AGAAGAACCCGAAGCATCATCGTCGATTGGATGAGTTGCTCGATATCTGG
GAGGAGAACCGCTATTACGGGAGTGATTATGTGAATAAGCTACGAGAGGT
GGTCAAGAATGCTTCGGTGTCCGGTCCGGTCAAGACGTCGCTAAGTGTCG
AGGAAAGTAATGTGGATTTCTCAGGAGCTGGTGCGAAGCCAATGCCCTCG
GGCAAGGGTGTCCCGTTCGTCATGCCGGCTACGCATGGTGATCCATCTAT
GCCCTACTACGACCTACCTGCCGGAAACCTCGTTCCGCATATCATCCCAG
ATTCGACGGTACCGCTGCGGCCGGAGTCGATCAAGCCGCTGCAGTTCTTG
GCTGGACCGGCGGATGAGAATCTTGTCGTGGCGCTGAAGAAGTTCCTCAA
GGATGTGGATCGGATATATGGGACTGGAGAGCCGGAGCACGAAGAGGACG
AGGTTGTGGATATTGATGATCTAGGCCAGGTGGTCGTCCGCGATGCCGAT
GGGGAGGTAATCGAGGGAGAGACATACTACGGATGGTCACGGTCATTCTG
CCAACAGATGAAGAAGCGACAGGCGAAGGGAGACATGAGTCGCAGCCGGA
GCCGCAGTCGCAGCCCCCTCAAGCGCCGACGATACAGCGACAGCGCCAGC
GACTGGAGTTCTCGTTCACGGTCACGATCTCGTTCACCACAGCGCAGATC
ACGCCGGCGTGATTCCCGATCCCGAACACGGTCTCCATACCGACCTCGCA
GTGCATCTCGGTCCAAATCGCGGGAGCGATCCAAGTCCTATTCTCCGCGT
CCGCCAGCTCCACGATCCATCCCTCCTCCGCCTGAATACCATCATCAACC
CCAATACCCCCCACCACATAATGCATATGGCAATACAGCACCGCCACCTC
CTCCGCCTCCGGTAGGATATCATGCACCACCACCGCCGCCACCGCAAATG
GGATACCCTTCGGCCGGCGGCGTACCACCGCATTTCGCTTTCCCGCCGGG
CGGACCGGCACCGCCTCCGCCTCCGCCCCCGAACTATCAGGGAACTTGGC
CGCCACCACCGCCGCCTGCGATGAACCTTGGGGCAGCACATCCACCACCG
CCGCCGCCGCCGCATGCTGCGCATCAAGGGTCGCATTTTCCGCCGCCGTA
CGGACAGGGTCAGTATGTGCAGCAGATGCCACCGGGGTCATATCATTTCC
CTCCGCCGCATCCAGGGAGGGGAGGATGGTATGGTGGAGGTGGAGGAGGA
CGAGGTGGACAGGGCTGGCGCTGAATGGCATCCCATCAACTCGCCATTGC
CAAGGCCTCCTTCTCCGCAGGACTCCTGCGGCCAGACCCGACGTCCGTCG
CGCGCGACGAAATCACAGCCTTCCACACCAGCCTAGACCGGGCGCTATCG
CATTGCACCCCGGCAAACATCCAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000634-T1.utr3p1 | KJC3_000634-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000634-T1.utr5p1 | KJC3_000634-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR008942 |
| DBxref | InterPro:IPR006903 |
| DBxref | InterPro:IPR006569 |
| DBxref | PFAM:PF04818 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:1420564..1422499 - |
|
