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KJC3_000642-T1, KJC3_000642-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000642-T1
Unique NameKJC3_000642-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:1444820..1447676+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000642-T1 ID=KJC3_000642-T1|Name=KJC3_000642-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2857bp|location=Sequence derived from alignment at ch1:1444820..1447676+ (Aspergillus niger KJC3)
CGCTCTCACCAGCTTCTGTACCTCACTGCTTCAGCTGGTCGGTTCGGTCT
ACGCCCTGGAGCTATCGAGCTGCCGTATTTCCTCACGCTCGTCCAGGCGC
CGGTAGCCTTTCGGAGCACCCGCGTACTTTCTTTCACCGTCCCGCATCCT
CTTCACCACATTAGACGATCCCCTTCGACTCCGGTCGAATAGGGAGAAAG
CCACATACATACATAATGCCAATCAAACGCAAAGCTACGGATAGCGGTCG
GTCAAGTAGAGCGTCGAAACGGCCCACACCTGTGCCGGATATCGGTAGTA
GTGATGAATACTCAGACTACGAGGAAGAAGTCAAGGATGATAACCTGAAA
GGTAGCGTAGAAGTGGAGTCTCGTTCATATGGGGTCTGCTTGCTGACATC
TTCTGCTTGCAAGGTGTCTTGGAGAAATTCTCTCTCGAATCTTTTAGCAA
CAAGAAGAGCGCCGCCGTACAGAGACAGGACCCCGATTTCGGTTACAAGG
ACTTTTCCTCGCTATCGTTGAAACCCGATCATGCGAACCGCCCGCTCTGG
ATCGATCCTCTTAAGGGAACTATTACCTTGGAGAGTTTCTCCCCTCTGGC
ACCCCAGGCGCAGGACTTCCTGACTACTATCGCCGAACCGCTGTCGCGTC
CGACCCATCTGCACGAATACCGATTGACAGGGAACAGTTTGTATGCGGCT
GTCTCGGTGGGTTTGCTGCCCCAGGATATCATCAACTTTCTAGATCGATT
GTCGAAAACGCCGCTTCCGGATACCATCAAGTCGTTCATTCTCGACTTCA
CGAAATCATACGGAAAGATCAAGGTCGTGCTGAAACATAATCGCTTCTTC
GTGGAAAGTACCGATCCGGCGATGTTGCAGATGCTGCTGCAGGATGAAGT
TATTGGTTCTCAGCGATTGAAAGGCACGGAGGGCATTATTCAGCAGGCAG
CCCCGAAAATGGGCGGCCTGGTCATTCCGGGTACAAAGGATGCAGCGGGT
GTCAGGCAGGCTTCGGAGCAGAAGCCGGCGGAAGACGGTGCAGGCGAGGC
TCGTAAAGAGGACGATATTCTGCTGGCTATTCGCGACGACGATGACGACG
AGGAGGAAGTTCAAGTGCACAGTTTCGAAATTCCCAACGAAGCAGTCGAA
CCCGTCAAGGCGCGCTGTCAGGCTATGGGCTGTCCAGCATTGGAGGAGTA
TGATTTCCGAAATGATGAGATCAATCCCACCTTGGATATCGACTTGAAGC
CGGCAGCACGAATTCGAAGCTACCAAGAAAAGAGTTTGAGTAAGATGTTC
GGTAACGGACGTGCGAAGAGTGGAATTATCGTCTTGCCTTGTGGTGCCGG
AAAAACGTTGGTGGGTATTACGGCGGGCTGCACGATCAAGAAGGGGACAA
TTGTCTTGTGTACCAGTTCAATGTCTGTGGTGCAATGGCGTAACGAGTTC
TTGCGCTGGTCCAATATTGATCCCGGTGATATTGCGGTTTTCACCTCAGA
TAACAAGGAGAAATTCCGTCGATCGACTGGTATCATCGTGTCAACCTACT
CCATGGTGTCCCAGACGCGTGCTCGGTCGCATGATGCGCAGAAGATGATG
GATTGGATTCAGTCACGAGAGTGGGGTCTGATGATTCTTGACGAGGTGCA
CGTCGTGCCTGCATCGATGTTCCGAAAGGTCACATCGGCAATCGCATGTC
AGAGTAAATTGGGATTGACGGCAACGCTGCTGCGAGAGGATGACAAGATC
AAGGATCTGAACTTCCTGATTGGTCCCAAGTTGTACGAAGCCAACTGGAT
GGAACTGGCCGAGCAAGGGCACATTGCCAAGGTTCAGTGCGCCGAGGTAT
GGTGTCCGATGACGACCGAATTCTACTCGGAGTACATGAGAGAAAAGTCA
CGAAAGGCTGCTCTTCTATACATTATGAACCCTCGGAAATTCCAAGCATG
CCAGTTCCTGATCGACTACCACGAGAAGCGAGGTGACAAGGTCATTGTCT
TTTCCGACAACGTTTACGCTCTTCAGCGGTATGCACTCAAGCTGAACAAG
GCCTATATCTACGGCGGTACTCCACAGAACGAGCGCATGCGCATTTTGGA
GAATTTCCAGCACAATGAACAAGTCAATACCATCTTCCTCTCCAAGATCG
GAGACACGTCGCTCGATCTGCCGGAAGCCACCTGTCTGATCCAGATCTCG
TCGCATTACGGTTCCCGTCGTCAGGAAGCCCAACGACTTGGTCGGATTCT
GCGAGCCAAGCGTCGAAACGACGAGGGATTCAACGCCTTCTTCTACTCGC
TTGTGTCGAAAGACACAGATGAAATGTTCTACTCTTCCAAGCGACAGGCT
TTCCTTGTCGACCAGGGCTACGCGTTCAAGGTCATTACTCACCTGCAAGG
CATCGAGAACCTGGAAGGGTTGGCGTACGCCACGCCCAGCGAACGCCGTG
AGCTGCTGCAGGAGGTGATGTTACAGAACGAGACTTCTGCCGAGGTAGAG
CACGTCACGGACGATCTCTTCTCAGGACGTTCGGGCGGCCAGCGAAAGGG
AGCAGTCAAGCGCAGTGCCGCGACACTCAGCGGCCTGGCCGGCGGTGAAG
ACATGGCGTATATCGAGTACAACAAGAGCCGGAACAAGCAGCTGAAGGAC
AAGGTGGGCCATCACCCGCTGTTCCGGAAGCTGGAGCGGGAACGACTCAA
GCGGAAGAAGGAGTTGGAGGATTTCATGCGGTAGTTGTGAAGCTAATACC
CAGACCGACACTACCTACTATACTATACGACATACCCTGTTAGATTGGAC
ATGCATTAGTGAAAAGTAATTTCACATACGAATGGAACCTAATTGTGCAT
TCTTGAA
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Coding sequence (CDS) from alignment at ch1:1444820..1447676+

>KJC3_000642-T1 ID=KJC3_000642-T1|Name=KJC3_000642-T1|organism=Aspergillus niger KJC3|type=CDS|length=4914bp|location=Sequence derived from alignment at ch1:1444820..1447676+ (Aspergillus niger KJC3)
ATGCCAATCAAACGCAAAGCTACGGATAGCGGTCGGTCAAGTAGAGCGTC
GAAACGGCCCACACCTGTGCCGGATATCGGTAGTAGTGATGAATACTCAG
ACTACGAGGAAGAAGTCAAGGATGATAACCTGAAAGGTGTCTTGGAGAAA
TTCTCTCTCGAATCTTTTAGCAACAAGAAGAGCGCCGCCGTACAGAGACA
GGACCCCGATTTCGGTTACAAGGACTTTTCCTCGCTATCGTTGAAACCCG
ATCATGCGAACCGCCCGCTCTGGATCGATCCTCTTAAGGGAACTATTACC
TTGGAGAGTTTCTCCCCTCTGGCACCCCAGGCGCAGGACTTCCTGACTAC
TATCGCCGAACCGCTGTCGCGTCCGACCCATCTGCACGAATACCGATTGA
CAGGGAACAGTTTGTATGCGGCTGTCTCGGTGGGTTTGCTGCCCCAGGAT
ATCATCAACTTTCTAGATCGATTGTCGAAAACGCCGCTTCCGGATACCAT
CAAGTCGTTCATTCTCGACTTCACGAAATCATACGGAAAGATCAAGGTCG
TGCTGAAACATAATCGCTTCTTCGTGGAAAGTACCGATCCGGCGATGTTG
CAGATGCTGCTGCAGGATGAAGTTATTGGTTCTCAGCGATTGAAAGGCAC
GGAGGGCATTATTCAGCAGGCAGCCCCGAAAATGGGCGGCCTGGTCATTC
CGGGTACAAAGGATGCAGCGGGTGTCAGGCAGGCTTCGGAGCAGAAGCCG
GCGGAAGACGGTGCAGGCGAGGCTCGTAAAGAGGACGATATTCTGCTGGC
TATTCGCGACGACGATGACGACGAGGAGGAAGTTCAAGTGCACAGTTTCG
AAATTCCCAACGAAGCAGTCGAACCCGTCAAGGCGCGCTGTCAGGCTATG
GGCTGTCCAGCATTGGAGGAGTATGATTTCCGAAATGATGAGATCAATCC
CACCTTGGATATCGACTTGAAGCCGGCAGCACGAATTCGAAGCTACCAAG
AAAAGAGTTTGAGTAAGATGTTCGGTAACGGACGTGCGAAGAGTGGAATT
ATCGTCTTGCCTTGTGGTGCCGGAAAAACGTTGGTGGGTATTACGGCGGG
CTGCACGATCAAGAAGGGGACAATTGTCTTGTGTACCAGTTCAATGTCTG
TGGTGCAATGGCGTAACGAGTTCTTGCGCTGGTCCAATATTGATCCCGGT
GATATTGCGGTTTTCACCTCAGATAACAAGGAGAAATTCCGTCGATCGAC
TGGTATCATCGTGTCAACCTACTCCATGGTGTCCCAGACGCGTGCTCGGT
CGCATGATGCGCAGAAGATGATGGATTGGATTCAGTCACGAGAGTGGGGT
CTGATGATTCTTGACGAGGTGCACGTCGTGCCTGCATCGATGTTCCGAAA
GGTCACATCGGCAATCGCATGTCAGAGTAAATTGGGATTGACGGCAACGC
TGCTGCGAGAGGATGACAAGATCAAGGATCTGAACTTCCTGATTGGTCCC
AAGTTGTACGAAGCCAACTGGATGGAACTGGCCGAGCAAGGGCACATTGC
CAAGGTTCAGTGCGCCGAGGTATGGTGTCCGATGACGACCGAATTCTACT
CGGAGTACATGAGAGAAAAGTCACGAAAGGCTGCTCTTCTATACATTATG
AACCCTCGGAAATTCCAAGCATGCCAGTTCCTGATCGACTACCACGAGAA
GCGAGGTGACAAGGTCATTGTCTTTTCCGACAACGTTTACGCTCTTCAGC
GGTATGCACTCAAGCTGAACAAGGCCTATATCTACGGCGGTACTCCACAG
AACGAGCGCATGCGCATTTTGGAGAATTTCCAGCACAATGAACAAGTCAA
TACCATCTTCCTCTCCAAGATCGGAGACACGTCGCTCGATCTGCCGGAAG
CCACCTGTCTGATCCAGATCTCGTCGCATTACGGTTCCCGTCGTCAGGAA
GCCCAACGACTTGGTCGGATTCTGCGAGCCAAGCGTCGAAACGACGAGGG
ATTCAACGCCTTCTTCTACTCGCTTGTGTCGAAAGACACAGATGAAATGT
TCTACTCTTCCAAGCGACAGGCTTTCCTTGTCGACCAGGGCTACGCGTTC
AAGGTCATTACTCACCTGCAAGGCATCGAGAACCTGGAAGGGTTGGCGTA
CGCCACGCCCAGCGAACGCCGTGAGCTGCTGCAGGAGGTGATGTTACAGA
ACGAGACTTCTGCCGAGGTAGAGCACGTCACGGACGATCTCTTCTCAGGA
CGTTCGGGCGGCCAGCGAAAGGGAGCAGTCAAGCGCAGTGCCGCGACACT
CAGCGGCCTGGCCGGCGGTGAAGACATGGCGTATATCGAGTACAACAAGA
GCCGGAACAAGCAGCTGAAGGACAAGGTGGGCCATCACCCGCTGTTCCGG
AAGCTGGAGCGGGAACGACTCAAGCGGAAGAAGGAGTTGGAGGATTTCAT
GCGGTAGATGCCAATCAAACGCAAAGCTACGGATAGCGGTCGGTCAAGTA
GAGCGTCGAAACGGCCCACACCTGTGCCGGATATCGGTAGTAGTGATGAA
TACTCAGACTACGAGGAAGAAGTCAAGGATGATAACCTGAAAGGTGTCTT
GGAGAAATTCTCTCTCGAATCTTTTAGCAACAAGAAGAGCGCCGCCGTAC
AGAGACAGGACCCCGATTTCGGTTACAAGGACTTTTCCTCGCTATCGTTG
AAACCCGATCATGCGAACCGCCCGCTCTGGATCGATCCTCTTAAGGGAAC
TATTACCTTGGAGAGTTTCTCCCCTCTGGCACCCCAGGCGCAGGACTTCC
TGACTACTATCGCCGAACCGCTGTCGCGTCCGACCCATCTGCACGAATAC
CGATTGACAGGGAACAGTTTGTATGCGGCTGTCTCGGTGGGTTTGCTGCC
CCAGGATATCATCAACTTTCTAGATCGATTGTCGAAAACGCCGCTTCCGG
ATACCATCAAGTCGTTCATTCTCGACTTCACGAAATCATACGGAAAGATC
AAGGTCGTGCTGAAACATAATCGCTTCTTCGTGGAAAGTACCGATCCGGC
GATGTTGCAGATGCTGCTGCAGGATGAAGTTATTGGTTCTCAGCGATTGA
AAGGCACGGAGGGCATTATTCAGCAGGCAGCCCCGAAAATGGGCGGCCTG
GTCATTCCGGGTACAAAGGATGCAGCGGGTGTCAGGCAGGCTTCGGAGCA
GAAGCCGGCGGAAGACGGTGCAGGCGAGGCTCGTAAAGAGGACGATATTC
TGCTGGCTATTCGCGACGACGATGACGACGAGGAGGAAGTTCAAGTGCAC
AGTTTCGAAATTCCCAACGAAGCAGTCGAACCCGTCAAGGCGCGCTGTCA
GGCTATGGGCTGTCCAGCATTGGAGGAGTATGATTTCCGAAATGATGAGA
TCAATCCCACCTTGGATATCGACTTGAAGCCGGCAGCACGAATTCGAAGC
TACCAAGAAAAGAGTTTGAGTAAGATGTTCGGTAACGGACGTGCGAAGAG
TGGAATTATCGTCTTGCCTTGTGGTGCCGGAAAAACGTTGGTGGGTATTA
CGGCGGGCTGCACGATCAAGAAGGGGACAATTGTCTTGTGTACCAGTTCA
ATGTCTGTGGTGCAATGGCGTAACGAGTTCTTGCGCTGGTCCAATATTGA
TCCCGGTGATATTGCGGTTTTCACCTCAGATAACAAGGAGAAATTCCGTC
GATCGACTGGTATCATCGTGTCAACCTACTCCATGGTGTCCCAGACGCGT
GCTCGGTCGCATGATGCGCAGAAGATGATGGATTGGATTCAGTCACGAGA
GTGGGGTCTGATGATTCTTGACGAGGTGCACGTCGTGCCTGCATCGATGT
TCCGAAAGGTCACATCGGCAATCGCATGTCAGAGTAAATTGGGATTGACG
GCAACGCTGCTGCGAGAGGATGACAAGATCAAGGATCTGAACTTCCTGAT
TGGTCCCAAGTTGTACGAAGCCAACTGGATGGAACTGGCCGAGCAAGGGC
ACATTGCCAAGGTTCAGTGCGCCGAGGTATGGTGTCCGATGACGACCGAA
TTCTACTCGGAGTACATGAGAGAAAAGTCACGAAAGGCTGCTCTTCTATA
CATTATGAACCCTCGGAAATTCCAAGCATGCCAGTTCCTGATCGACTACC
ACGAGAAGCGAGGTGACAAGGTCATTGTCTTTTCCGACAACGTTTACGCT
CTTCAGCGGTATGCACTCAAGCTGAACAAGGCCTATATCTACGGCGGTAC
TCCACAGAACGAGCGCATGCGCATTTTGGAGAATTTCCAGCACAATGAAC
AAGTCAATACCATCTTCCTCTCCAAGATCGGAGACACGTCGCTCGATCTG
CCGGAAGCCACCTGTCTGATCCAGATCTCGTCGCATTACGGTTCCCGTCG
TCAGGAAGCCCAACGACTTGGTCGGATTCTGCGAGCCAAGCGTCGAAACG
ACGAGGGATTCAACGCCTTCTTCTACTCGCTTGTGTCGAAAGACACAGAT
GAAATGTTCTACTCTTCCAAGCGACAGGCTTTCCTTGTCGACCAGGGCTA
CGCGTTCAAGGTCATTACTCACCTGCAAGGCATCGAGAACCTGGAAGGGT
TGGCGTACGCCACGCCCAGCGAACGCCGTGAGCTGCTGCAGGAGGTGATG
TTACAGAACGAGACTTCTGCCGAGGTAGAGCACGTCACGGACGATCTCTT
CTCAGGACGTTCGGGCGGCCAGCGAAAGGGAGCAGTCAAGCGCAGTGCCG
CGACACTCAGCGGCCTGGCCGGCGGTGAAGACATGGCGTATATCGAGTAC
AACAAGAGCCGGAACAAGCAGCTGAAGGACAAGGTGGGCCATCACCCGCT
GTTCCGGAAGCTGGAGCGGGAACGACTCAAGCGGAAGAAGGAGTTGGAGG
ATTTCATGCGGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
GO:0006289nucleotide-excision repair
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0005524ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SSL2KJC3_000642Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000642-T1.utr5p1KJC3_000642-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000642-T1.exon1KJC3_000642-T1.exon1Aspergillus niger KJC3exon
KJC3_000642-T1.exon2KJC3_000642-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000642-T1.cdsKJC3_000642-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000642-T1.utr3p1KJC3_000642-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000642-T1KJC3_000642-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09260HSP
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR001161
DBxrefInterPro:IPR006935
DBxrefInterPro:IPR032830
DBxrefInterPro:IPR032438
DBxrefInterPro:IPR001650
DBxrefInterPro:IPR014001
DBxrefPFAM:PF04851
DBxrefPFAM:PF13625
DBxrefPFAM:PF00271
DBxrefPFAM:PF16203
ProductDNA repair helicase RAD25
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:1444820..1447676 +
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