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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:1499380..1500856+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000657-T1 ID=KJC3_000657-T1|Name=KJC3_000657-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1477bp|location=Sequence derived from alignment at ch1:1499380..1500856+ (Aspergillus niger KJC3)
GCCATACGCCCAGTTCTTGCCGAAACGCCTCGTTCTCCTCCATCTCTGCT
TCATAGTACAGATGGTATGCGTCATTAGTCAATACTGCACCGTACTCGAT
CAGCTCAAGTACTAGAACGAGACTTTTGTTTATCTGCTGCAATGGATGAT
GCAGAGGTTGATCATACTAAACCAATCCCGGCCTACTACTGCTGTTATCT
GCTGCGCTCGACCAAACAGCGCACCTCCCTGTATATTGGCTCCACTCCAC
ACCCTGCCAGGCGACTTGCGCAGCACAATGGGGAGTCTAAAGGTGGCGCT
CGCAAAACAGCCAAGGATGACAAAAGACCGTGGGAGATGGTCTTGCTCGT
TGAGGGCTTTACGAGCCGCGTTGGCGCGTTGCAATTCGAGTAAGCATCTA
TGAACACATTATCGCGCTCTTATTACGCTGTAGATCTGATAGCATTGTAG
GTGGGCATGGCAGAACCCAAGGATGTCTTCGCAGCACCCGGCAAATCGCC
ACCAGTTCGACCTAGAAACTGGCGATGTGGCAGGCACCTCAGGGGTTCAG
CCCAGTACCGAGGCCGGCAAGGCCAAGCATCGAGGTCGTGGCTCCCGGAG
ATCATTGAAGGCCCATTTAGAAGATTTGCATCTTTTCTTACGTTCGACCT
ATTTTTCGAAATGGCCACTGAGGTTACGATTCTTCAACAGAGACGTCTAC
CAATTGTGGACGACTTGGTGCGACCGCGTTGATGCCTTGCTTCCCGAGCA
TGTCCGGACCATTTTAGATGGGGACTGTCCTAAGGACCACCTGTCATGGG
CTGACGAGCCGAGAGTCGGAAGCGTTGAACATATCAAGGTCGATTACAGT
GATATCTATGACTACGTAGAGAAGTCCCATTTCTTGCTGGATGATCCCAG
CGATTTGCGTTGCAAAATATGTCAAGCAAAGATCGCCCTCAGTGAAGAAC
TGGCTCTAGTCTGCCCCCGGGCGAGCTGCTACTGCATCAGCCATCTATTG
TGTCTGTCATCCAGGTTTCTGGACCACGCCGAGGAGCCCGAGCAGCTCGT
TCCGATTGATGGAATTTGTCCTCTATGTAATAAGGTCATCCAATGGTCAA
CAATGATGCAGGAACTGAGCCTCAGAACTCGAGGACATAATGAGTTTCGT
GCCATTCTGCGCAAGGCAAAACGAGGCCGTGCAAAGGCGCATGGTTCTGT
CCATGAAGCAAGCGCCCCTGATGGAGTAGCCAGCGCCGTCGAAAACCCAG
GCAGCCGAGCTGCTTGCGTCGAGAGTGCGTCAGTTGGCGTCAGCGATAGT
CTCGATGTGGATAATCATGACGACGCCAGTTTGGATGAGAATTGGACGGA
GTCGTTGGATCTGGATCCGAATCCCGATGAACTCTTGAACCGCCCAAAGG
ATCATAAGATGGAGTCGTCTAGGGTGGAAATCATCATAGACGACAGTGAC
TGCGAAGAGATGGAGGATTTGGGATGA back to topCoding sequence (CDS) from alignment at ch1:1499380..1500856+ >KJC3_000657-T1 ID=KJC3_000657-T1|Name=KJC3_000657-T1|organism=Aspergillus niger KJC3|type=CDS|length=2550bp|location=Sequence derived from alignment at ch1:1499380..1500856+ (Aspergillus niger KJC3)
ATGGATGATGCAGAGGTTGATCATACTAAACCAATCCCGGCCTACTACTG
CTGTTATCTGCTGCGCTCGACCAAACAGCGCACCTCCCTGTATATTGGCT
CCACTCCACACCCTGCCAGGCGACTTGCGCAGCACAATGGGGAGTCTAAA
GGTGGCGCTCGCAAAACAGCCAAGGATGACAAAAGACCGTGGGAGATGGT
CTTGCTCGTTGAGGGCTTTACGAGCCGCGTTGGCGCGTTGCAATTCGAGT
GGGCATGGCAGAACCCAAGGATGTCTTCGCAGCACCCGGCAAATCGCCAC
CAGTTCGACCTAGAAACTGGCGATGTGGCAGGCACCTCAGGGGTTCAGCC
CAGTACCGAGGCCGGCAAGGCCAAGCATCGAGGTCGTGGCTCCCGGAGAT
CATTGAAGGCCCATTTAGAAGATTTGCATCTTTTCTTACGTTCGACCTAT
TTTTCGAAATGGCCACTGAGGTTACGATTCTTCAACAGAGACGTCTACCA
ATTGTGGACGACTTGGTGCGACCGCGTTGATGCCTTGCTTCCCGAGCATG
TCCGGACCATTTTAGATGGGGACTGTCCTAAGGACCACCTGTCATGGGCT
GACGAGCCGAGAGTCGGAAGCGTTGAACATATCAAGGTCGATTACAGTGA
TATCTATGACTACGTAGAGAAGTCCCATTTCTTGCTGGATGATCCCAGCG
ATTTGCGTTGCAAAATATGTCAAGCAAAGATCGCCCTCAGTGAAGAACTG
GCTCTAGTCTGCCCCCGGGCGAGCTGCTACTGCATCAGCCATCTATTGTG
TCTGTCATCCAGGTTTCTGGACCACGCCGAGGAGCCCGAGCAGCTCGTTC
CGATTGATGGAATTTGTCCTCTATGTAATAAGGTCATCCAATGGTCAACA
ATGATGCAGGAACTGAGCCTCAGAACTCGAGGACATAATGAGTTTCGTGC
CATTCTGCGCAAGGCAAAACGAGGCCGTGCAAAGGCGCATGGTTCTGTCC
ATGAAGCAAGCGCCCCTGATGGAGTAGCCAGCGCCGTCGAAAACCCAGGC
AGCCGAGCTGCTTGCGTCGAGAGTGCGTCAGTTGGCGTCAGCGATAGTCT
CGATGTGGATAATCATGACGACGCCAGTTTGGATGAGAATTGGACGGAGT
CGTTGGATCTGGATCCGAATCCCGATGAACTCTTGAACCGCCCAAAGGAT
CATAAGATGGAGTCGTCTAGGGTGGAAATCATCATAGACGACAGTGACTG
CGAAGAGATGGAGGATTTGGGATGAATGGATGATGCAGAGGTTGATCATA
CTAAACCAATCCCGGCCTACTACTGCTGTTATCTGCTGCGCTCGACCAAA
CAGCGCACCTCCCTGTATATTGGCTCCACTCCACACCCTGCCAGGCGACT
TGCGCAGCACAATGGGGAGTCTAAAGGTGGCGCTCGCAAAACAGCCAAGG
ATGACAAAAGACCGTGGGAGATGGTCTTGCTCGTTGAGGGCTTTACGAGC
CGCGTTGGCGCGTTGCAATTCGAGTGGGCATGGCAGAACCCAAGGATGTC
TTCGCAGCACCCGGCAAATCGCCACCAGTTCGACCTAGAAACTGGCGATG
TGGCAGGCACCTCAGGGGTTCAGCCCAGTACCGAGGCCGGCAAGGCCAAG
CATCGAGGTCGTGGCTCCCGGAGATCATTGAAGGCCCATTTAGAAGATTT
GCATCTTTTCTTACGTTCGACCTATTTTTCGAAATGGCCACTGAGGTTAC
GATTCTTCAACAGAGACGTCTACCAATTGTGGACGACTTGGTGCGACCGC
GTTGATGCCTTGCTTCCCGAGCATGTCCGGACCATTTTAGATGGGGACTG
TCCTAAGGACCACCTGTCATGGGCTGACGAGCCGAGAGTCGGAAGCGTTG
AACATATCAAGGTCGATTACAGTGATATCTATGACTACGTAGAGAAGTCC
CATTTCTTGCTGGATGATCCCAGCGATTTGCGTTGCAAAATATGTCAAGC
AAAGATCGCCCTCAGTGAAGAACTGGCTCTAGTCTGCCCCCGGGCGAGCT
GCTACTGCATCAGCCATCTATTGTGTCTGTCATCCAGGTTTCTGGACCAC
GCCGAGGAGCCCGAGCAGCTCGTTCCGATTGATGGAATTTGTCCTCTATG
TAATAAGGTCATCCAATGGTCAACAATGATGCAGGAACTGAGCCTCAGAA
CTCGAGGACATAATGAGTTTCGTGCCATTCTGCGCAAGGCAAAACGAGGC
CGTGCAAAGGCGCATGGTTCTGTCCATGAAGCAAGCGCCCCTGATGGAGT
AGCCAGCGCCGTCGAAAACCCAGGCAGCCGAGCTGCTTGCGTCGAGAGTG
CGTCAGTTGGCGTCAGCGATAGTCTCGATGTGGATAATCATGACGACGCC
AGTTTGGATGAGAATTGGACGGAGTCGTTGGATCTGGATCCGAATCCCGA
TGAACTCTTGAACCGCCCAAAGGATCATAAGATGGAGTCGTCTAGGGTGG
AAATCATCATAGACGACAGTGACTGCGAAGAGATGGAGGATTTGGGATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0033557 | Slx1-Slx4 complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0017108 | 5'-flap endonuclease activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000657-T1.utr5p1 | KJC3_000657-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027520 |
| DBxref | InterPro:IPR013083 |
| DBxref | InterPro:IPR000305 |
| DBxref | InterPro:IPR035901 |
| DBxref | PFAM:PF01541 |
| Product | Slx4p interacting protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:1499380..1500856 + |
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