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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:1501987..1503922+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000659-T2 ID=KJC3_000659-T2|Name=KJC3_000659-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1936bp|location=Sequence derived from alignment at ch1:1501987..1503922+ (Aspergillus niger KJC3)
CCAAATTCTGGGATAATTCCAGCCAGAGACTGGGGATACAGCCAATATCA
AACCCACCATCTATCGATCTACTACACAGTACTACAAAGTACTACTAGTG
GGGAAAGGCAGCACATTTTCACCGGCACGCGCCGCGCTCATCTTCTCCAA
CAACGGCCGGATTCTCTCTGCCTCTCTCCACCATCCCCATCCCTTCGTCA
ACCCTCCACTCCTCAGGGTCGCCATGGGCTCAGAGTCTTCCCCACAGCCA
TCGAATGAGATGCTCTCCTTCCATGTTACGGCCTCCGTCCTGACTCCCCG
ACTGGGAAGACTGGCCTTTGCCGGCAGAAAACCCATCTCCACCCCACATT
ACATCCCTCTGGCCTCCCGAGGCGTCGTTCCGCATATTGCCCATGATGTG
CTGCGTGATCACACAGACATCGGCAGTCTATATGTCGGTCTCGAAGATTG
TATGCCCTCCCAGCCACCCTCTCTCCTTATCCGGAGGTCGAATCCTCGCT
GACCCGAATGCCCATTGGGGCCCAGATCAGTCGTAGAAAGACAAAGCCAA
AAACATCCGCCACCGGTCTATACCATTCCCACCGCGCAAGATGAATCGGC
CTTGCGCAAGTTCGTCGCTCTGCCCGATGACCTCCTCTTGATCATGGGCG
CACGTCGGGAGCCCCCGATCAAATGCCCCCCGGCCAACACGCCAAACTCC
GTCGCCATTTACACCTCCGTTGGGTTCAGACAGCTCGAAGCTACCCAGTA
CGTCGACGCCGTGCAGAAGCTCAGCCCGGATATCGTCGTCGGACTGGCAG
ATCTTGTGCTTGGACACACCCCTGGCAACAAGAGACGCGGCAAGATGGTG
GATCGAACCCACGCTTTCACTACGCATGCCACTGGATTGCTCTACGGCAG
CACAGTGCCCGAGGAGAACCGATCAAAGTCAGCCTACTTCGCTCCTGTCC
TCCCTCTCGAAAACGCCCAGCAGTCAATCTACATGGACGACCTCGAGACC
GAGCTCAGACCATACATCTCCGGCCTGGCACTCTACGAATCGGCTTCCCT
ATCAGCCATCTCCGAACCGCTCGGAGACCTCCCCCGCCTCCTCTACAGCG
CACCCGCGACTCCACACGATATCCTCCGCGACGTTTCCCTCGGAGCAGAT
CTCCTCACCATCCCCTTCATGGGTGTCTGCTCTGACGCCGGCATCGCCCT
GGATTTCACCTTCCCTTCACCCAACACCCCCAGGACCGTCACCCAACCTC
ATGACCTCGCCTTCGACCTGTGGTCCCCGTCTCACACAACCGACACCTCC
CCTCTCTCCAAATCATGCGAATGCTACACTTGCCGCAATCACCACCGCGC
ATACATCCATCACCTCCTGACCGCCAAGGAAATGCTCGCCTGGACACTTC
TCCAAGTCCACAACCACCATGTAATGGATACTTTCTTCGCTGCCATCCGC
GAAAGCATTTCCCGGGGTACCTTCGAAGCCGACACTCAAACCTTCCAACG
CACTTACGTCTCCGAACTACCCAAGCCTACCGGCCAGGGTCCTCGGTATG
TACATATATATACATCCTATTCCCCGAATTTCATAACCACACCCGCATCC
CATAACTGACAACTGATCGCTATATAGACTCCGCGGCTACCAACTCCCCG
CGTCTGGGCCCAACCAACCCCGCCGTAATGCCCGCGCATACGGTAAACTC
GACGACGCAATGGAGAAGTTCGCCGAGTCGCAGTCTTCTCTGGCGACGCC
GGATACAGGCGCCGAGGGGCTTGAGGAGCATGGATTTGGGATGAAGGAGG
TGTCATAGTAGCTTGGTCGGTTTATAGATAGCTAGATGCATGGATGCATG
GATACATGAATGCAGACTAGAGATAGTTATGGCATAGCATAGCGTGGGTT
TGTGGATGATGAATGATTAATTGAACGAAGAGTTAT back to topCoding sequence (CDS) from alignment at ch1:1501987..1503922+ >KJC3_000659-T2 ID=KJC3_000659-T2|Name=KJC3_000659-T2|organism=Aspergillus niger KJC3|type=CDS|length=4266bp|location=Sequence derived from alignment at ch1:1501987..1503922+ (Aspergillus niger KJC3)
ATGGGCTCAGAGTCTTCCCCACAGCCATCGAATGAGATGCTCTCCTTCCA
TGTTACGGCCTCCGTCCTGACTCCCCGACTGGGAAGACTGGCCTTTGCCG
GCAGAAAACCCATCTCCACCCCACATTACATCCCTCTGGCCTCCCGAGGC
GTCGTTCCGCATATTGCCCATGATGTGCTGCGTGATCACACAGACATCGG
CAGTCTATATGTCGGTCTCGAAGATTTCGTAGAAAGACAAAGCCAAAAAC
ATCCGCCACCGGTCTATACCATTCCCACCGCGCAAGATGAATCGGCCTTG
CGCAAGTTCGTCGCTCTGCCCGATGACCTCCTCTTGATCATGGGCGCACG
TCGGGAGCCCCCGATCAAATGCCCCCCGGCCAACACGCCAAACTCCGTCG
CCATTTACACCTCCGTTGGGTTCAGACAGCTCGAAGCTACCCAGTACGTC
GACGCCGTGCAGAAGCTCAGCCCGGATATCGTCGTCGGACTGGCAGATCT
TGTGCTTGGACACACCCCTGGCAACAAGAGACGCGGCAAGATGGTGGATC
GAACCCACGCTTTCACTACGCATGCCACTGGATTGCTCTACGGCAGCACA
GTGCCCGAGGAGAACCGATCAAAGTCAGCCTACTTCGCTCCTGTCCTCCC
TCTCGAAAACGCCCAGCAGTCAATCTACATGGACGACCTCGAGACCGAGC
TCAGACCATACATCTCCGGCCTGGCACTCTACGAATCGGCTTCCCTATCA
GCCATCTCCGAACCGCTCGGAGACCTCCCCCGCCTCCTCTACAGCGCACC
CGCGACTCCACACGATATCCTCCGCGACGTTTCCCTCGGAGCAGATCTCC
TCACCATCCCCTTCATGGGTGTCTGCTCTGACGCCGGCATCGCCCTGGAT
TTCACCTTCCCTTCACCCAACACCCCCAGGACCGTCACCCAACCTCATGA
CCTCGCCTTCGACCTGTGGTCCCCGTCTCACACAACCGACACCTCCCCTC
TCTCCAAATCATGCGAATGCTACACTTGCCGCAATCACCACCGCGCATAC
ATCCATCACCTCCTGACCGCCAAGGAAATGCTCGCCTGGACACTTCTCCA
AGTCCACAACCACCATGTAATGGATACTTTCTTCGCTGCCATCCGCGAAA
GCATTTCCCGGGGTACCTTCGAAGCCGACACTCAAACCTTCCAACGCACT
TACGTCTCCGAACTACCCAAGCCTACCGGCCAGGGTCCTCGACTCCGCGG
CTACCAACTCCCCGCGTCTGGGCCCAACCAACCCCGCCGTAATGCCCGCG
CATACGGTAAACTCGACGACGCAATGGAGAAGTTCGCCGAGTCGCAGTCT
TCTCTGGCGACGCCGGATACAGGCGCCGAGGGGCTTGAGGAGCATGGATT
TGGGATGAAGGAGGTGTCATAGATGGGCTCAGAGTCTTCCCCACAGCCAT
CGAATGAGATGCTCTCCTTCCATGTTACGGCCTCCGTCCTGACTCCCCGA
CTGGGAAGACTGGCCTTTGCCGGCAGAAAACCCATCTCCACCCCACATTA
CATCCCTCTGGCCTCCCGAGGCGTCGTTCCGCATATTGCCCATGATGTGC
TGCGTGATCACACAGACATCGGCAGTCTATATGTCGGTCTCGAAGATTTC
GTAGAAAGACAAAGCCAAAAACATCCGCCACCGGTCTATACCATTCCCAC
CGCGCAAGATGAATCGGCCTTGCGCAAGTTCGTCGCTCTGCCCGATGACC
TCCTCTTGATCATGGGCGCACGTCGGGAGCCCCCGATCAAATGCCCCCCG
GCCAACACGCCAAACTCCGTCGCCATTTACACCTCCGTTGGGTTCAGACA
GCTCGAAGCTACCCAGTACGTCGACGCCGTGCAGAAGCTCAGCCCGGATA
TCGTCGTCGGACTGGCAGATCTTGTGCTTGGACACACCCCTGGCAACAAG
AGACGCGGCAAGATGGTGGATCGAACCCACGCTTTCACTACGCATGCCAC
TGGATTGCTCTACGGCAGCACAGTGCCCGAGGAGAACCGATCAAAGTCAG
CCTACTTCGCTCCTGTCCTCCCTCTCGAAAACGCCCAGCAGTCAATCTAC
ATGGACGACCTCGAGACCGAGCTCAGACCATACATCTCCGGCCTGGCACT
CTACGAATCGGCTTCCCTATCAGCCATCTCCGAACCGCTCGGAGACCTCC
CCCGCCTCCTCTACAGCGCACCCGCGACTCCACACGATATCCTCCGCGAC
GTTTCCCTCGGAGCAGATCTCCTCACCATCCCCTTCATGGGTGTCTGCTC
TGACGCCGGCATCGCCCTGGATTTCACCTTCCCTTCACCCAACACCCCCA
GGACCGTCACCCAACCTCATGACCTCGCCTTCGACCTGTGGTCCCCGTCT
CACACAACCGACACCTCCCCTCTCTCCAAATCATGCGAATGCTACACTTG
CCGCAATCACCACCGCGCATACATCCATCACCTCCTGACCGCCAAGGAAA
TGCTCGCCTGGACACTTCTCCAAGTCCACAACCACCATGTAATGGATACT
TTCTTCGCTGCCATCCGCGAAAGCATTTCCCGGGGTACCTTCGAAGCCGA
CACTCAAACCTTCCAACGCACTTACGTCTCCGAACTACCCAAGCCTACCG
GCCAGGGTCCTCGACTCCGCGGCTACCAACTCCCCGCGTCTGGGCCCAAC
CAACCCCGCCGTAATGCCCGCGCATACGGTAAACTCGACGACGCAATGGA
GAAGTTCGCCGAGTCGCAGTCTTCTCTGGCGACGCCGGATACAGGCGCCG
AGGGGCTTGAGGAGCATGGATTTGGGATGAAGGAGGTGTCATAGATGGGC
TCAGAGTCTTCCCCACAGCCATCGAATGAGATGCTCTCCTTCCATGTTAC
GGCCTCCGTCCTGACTCCCCGACTGGGAAGACTGGCCTTTGCCGGCAGAA
AACCCATCTCCACCCCACATTACATCCCTCTGGCCTCCCGAGGCGTCGTT
CCGCATATTGCCCATGATGTGCTGCGTGATCACACAGACATCGGCAGTCT
ATATGTCGGTCTCGAAGATTTCGTAGAAAGACAAAGCCAAAAACATCCGC
CACCGGTCTATACCATTCCCACCGCGCAAGATGAATCGGCCTTGCGCAAG
TTCGTCGCTCTGCCCGATGACCTCCTCTTGATCATGGGCGCACGTCGGGA
GCCCCCGATCAAATGCCCCCCGGCCAACACGCCAAACTCCGTCGCCATTT
ACACCTCCGTTGGGTTCAGACAGCTCGAAGCTACCCAGTACGTCGACGCC
GTGCAGAAGCTCAGCCCGGATATCGTCGTCGGACTGGCAGATCTTGTGCT
TGGACACACCCCTGGCAACAAGAGACGCGGCAAGATGGTGGATCGAACCC
ACGCTTTCACTACGCATGCCACTGGATTGCTCTACGGCAGCACAGTGCCC
GAGGAGAACCGATCAAAGTCAGCCTACTTCGCTCCTGTCCTCCCTCTCGA
AAACGCCCAGCAGTCAATCTACATGGACGACCTCGAGACCGAGCTCAGAC
CATACATCTCCGGCCTGGCACTCTACGAATCGGCTTCCCTATCAGCCATC
TCCGAACCGCTCGGAGACCTCCCCCGCCTCCTCTACAGCGCACCCGCGAC
TCCACACGATATCCTCCGCGACGTTTCCCTCGGAGCAGATCTCCTCACCA
TCCCCTTCATGGGTGTCTGCTCTGACGCCGGCATCGCCCTGGATTTCACC
TTCCCTTCACCCAACACCCCCAGGACCGTCACCCAACCTCATGACCTCGC
CTTCGACCTGTGGTCCCCGTCTCACACAACCGACACCTCCCCTCTCTCCA
AATCATGCGAATGCTACACTTGCCGCAATCACCACCGCGCATACATCCAT
CACCTCCTGACCGCCAAGGAAATGCTCGCCTGGACACTTCTCCAAGTCCA
CAACCACCATGTAATGGATACTTTCTTCGCTGCCATCCGCGAAAGCATTT
CCCGGGGTACCTTCGAAGCCGACACTCAAACCTTCCAACGCACTTACGTC
TCCGAACTACCCAAGCCTACCGGCCAGGGTCCTCGACTCCGCGGCTACCA
ACTCCCCGCGTCTGGGCCCAACCAACCCCGCCGTAATGCCCGCGCATACG
GTAAACTCGACGACGCAATGGAGAAGTTCGCCGAGTCGCAGTCTTCTCTG
GCGACGCCGGATACAGGCGCCGAGGGGCTTGAGGAGCATGGATTTGGGAT
GAAGGAGGTGTCATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008479 | queuine tRNA-ribosyltransferase activity |
| GO:0016763 | transferase activity, transferring pentosyl groups |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006400 | tRNA modification |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000659-T2.utr5p1 | KJC3_000659-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000659-T2.utr3p1 | KJC3_000659-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR028592 |
| DBxref | InterPro:IPR036511 |
| DBxref | InterPro:IPR002616 |
| DBxref | PFAM:PF01702 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:1501987..1503922 + |
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