|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:1537447..1538546+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000675-T1 ID=KJC3_000675-T1|Name=KJC3_000675-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1100bp|location=Sequence derived from alignment at ch1:1537447..1538546+ (Aspergillus niger KJC3)
TTCATGACTGCACTCTCACTTGCTTCTCATACTCAACTTCTCGTCTGACT
TCACTTGATACTATCGCATGACCCAACAGGTTGTCTCTTCTGGTTGTTGC
TATAGTGAACGCGAGGCCAGGTGTGCTTACATAACCCCTTCTGCAGGTCA
GGTGTAGATCGTCAATCCAGCCAACCCCAAGGGACCGACCTCATCCAGCG
CGGAATTCCCCTCCATTCAGTTGGTACCCTTCGTATCCCCGCATCTATCA
AGTTGCTGATTATTTCGCAGCCACAGACGGGCTTTCCCATTATTCCAGCC
CCGTCTTCTTCAGTTCTTCTTTCGTTGTTGATCACCTTCTCCCCGCATCA
TGGCCGCCGACCTCTCCAGCTCGAGGGAGCTGTATGAATCTGGACTGACG
GTCCACTCAGATTCTGAGAACTATTCGGCCAATCATGACATTTCCGGATC
TCAGTCCTCCTCCTCGAGCTCTCCCCTGATCCTCTACAAGCCCCCGACCA
TCTGGAGTATCCTGCGGGGAGCTGCCATTAATCTCGTTCTCCCATTTGTG
AATGGCTTGATGCTGGGATTTGGAGAGTTGTTTGCACATGAAGCAGCCTA
TCGACTCGGCTGGTCCGGGACAAAGGTACGCGTACATCTTTGTTTGGTCC
CCAGGTGGCGCAGGACTTGCGCCGGTCGCTTCTTTCAAGCCCGGCCCTCG
TTATGGTTCAATAATGCTAACGAATCTTCCATATTAGGTCTTCCCTATGC
ATCGGCGTTCGAGACCTGTCGGGCCTGGGATCGAGGTTCGAGACATCCCG
TCGCAACGGAGGGGGACTAGGGCAGCCGGACTGAAAGATGCTACGTCTCT
AGAGTAGACCCGGACGGAGTACTAGCGGACCATATAGATATCTCATCACG
CCCGATTGATATTGGCATGTACGGGTAAAGTGGCATCAAAACAGTTCAGT
TCTTGTCGCTTGCAGGGTGGCATGAATGCGCATCAGGGGTTACAGTGTAC
ATAGAGCAAGCATCAGTAATCGGTCTGACTGGACGGCGTCTGGCGAACCA
CCTCGAATTTAACCTCTCACATTGACGAGAATTGCATTTCTGGAACTGGG
back to topCoding sequence (CDS) from alignment at ch1:1537447..1538546+ >KJC3_000675-T1 ID=KJC3_000675-T1|Name=KJC3_000675-T1|organism=Aspergillus niger KJC3|type=CDS|length=792bp|location=Sequence derived from alignment at ch1:1537447..1538546+ (Aspergillus niger KJC3)
ATGGCCGCCGACCTCTCCAGCTCGAGGGAGCTGTATGAATCTGGACTGAC
GGTCCACTCAGATTCTGAGAACTATTCGGCCAATCATGACATTTCCGGAT
CTCAGTCCTCCTCCTCGAGCTCTCCCCTGATCCTCTACAAGCCCCCGACC
ATCTGGAGTATCCTGCGGGGAGCTGCCATTAATCTCGTTCTCCCATTTGT
GAATGGCTTGATGCTGGGATTTGGAGAGTTGTTTGCACATGAAGCAGCCT
ATCGACTCGGCTGGTCCGGGACAAAGGTCTTCCCTATGCATCGGCGTTCG
AGACCTGTCGGGCCTGGGATCGAGGTTCGAGACATCCCGTCGCAACGGAG
GGGGACTAGGGCAGCCGGACTGAAAGATGCTACGTCTCTAGAGTAGATGG
CCGCCGACCTCTCCAGCTCGAGGGAGCTGTATGAATCTGGACTGACGGTC
CACTCAGATTCTGAGAACTATTCGGCCAATCATGACATTTCCGGATCTCA
GTCCTCCTCCTCGAGCTCTCCCCTGATCCTCTACAAGCCCCCGACCATCT
GGAGTATCCTGCGGGGAGCTGCCATTAATCTCGTTCTCCCATTTGTGAAT
GGCTTGATGCTGGGATTTGGAGAGTTGTTTGCACATGAAGCAGCCTATCG
ACTCGGCTGGTCCGGGACAAAGGTCTTCCCTATGCATCGGCGTTCGAGAC
CTGTCGGGCCTGGGATCGAGGTTCGAGACATCCCGTCGCAACGGAGGGGG
ACTAGGGCAGCCGGACTGAAAGATGCTACGTCTCTAGAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005741 | mitochondrial outer membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000675-T1.utr3p1 | KJC3_000675-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013262 |
| DBxref | PFAM:PF08219 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:1537447..1538546 + |
|
