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KJC3_000688-T1, KJC3_000688-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000688-T1
Unique NameKJC3_000688-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:1571342..1571967+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000688-T1 ID=KJC3_000688-T1|Name=KJC3_000688-T1|organism=Aspergillus niger KJC3|type=mRNA|length=626bp|location=Sequence derived from alignment at ch1:1571342..1571967+ (Aspergillus niger KJC3)
ATGGGACCGCGCGTGACTAAGCTGGCCCTTGGCCCGTGCCCCGTTCGGTC
CGCCAAAAATTTCCTGCGTATCGCCGAAGTTCAAGTGCAGCGGTTTGGCA
TCGATAAACGCACTCGTTCAACACCCAGCACCTTCATTTCGTCTTCCAGT
CGCTTAACAAAACTAATCCTTCAAGTGAGTCTATTTGCAGTCTACTCCAA
TGCTACTGACTCGTACTGACTGAAGTCCTCTAGAATGCATCTTATGTGTA
TGTTTCTCCGCACTCGGACTCCCCTCGATCAATCCGAACTAACGAATGCA
CAAAGACTCTCTGGGCCCCGATGGCAAGCGGGTTTACACCCTCAAGAAGG
TTACCGAGGACGGTCGCGTTACCAAGAGTGCTCACCCCGCCCGTTTCTCT
CCCGATGACAAGTACTCTCGGTAGGTTCTTTTCGCCGACGATCTCCAGGC
ACATTGGAGAGAATTTGTGGACTAATGATATTGGCTATTTAGGCACCGTG
TGACCCTCAAGAAGAGATACGGTCTGCTTATGACCCAGCAAGCCGGTATG
AAACCCCGAGTGCGAGTCCCCATATAGTGGATATGGCTGACGGCAGACTA
CAGACAAGGAGGCTGCTAAGCTGTAA
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Coding sequence (CDS) from alignment at ch1:1571342..1571967+

>KJC3_000688-T1 ID=KJC3_000688-T1|Name=KJC3_000688-T1|organism=Aspergillus niger KJC3|type=CDS|length=1935bp|location=Sequence derived from alignment at ch1:1571342..1571967+ (Aspergillus niger KJC3)
ATGGGACCGCGCGTGACTAAGCTGGCCCTTGGCCCGTGCCCCGTTCGGTC
CGCCAAAAATTTCCTGCGTATCGCCGAAGTTCAAGTGCAGCGGTTTGGCA
TCGATAAACGCACTCGTTCAACACCCAGCACCTTCATTTCGTCTTCCAGT
CGCTTAACAAAACTAATCCTTCAATCCTCTAGAATGCATCTTATGTACTC
TCTGGGCCCCGATGGCAAGCGGGTTTACACCCTCAAGAAGGTTACCGAGG
ACGGTCGCGTTACCAAGAGTGCTCACCCCGCCCGTTTCTCTCCCGATGAC
AAGTACTCTCGGCACCGTGTGACCCTCAAGAAGAGATACGGTCTGCTTAT
GACCCAGCAAGCCGACAAGGAGGCTGCTAAGCTGTAAATGGGACCGCGCG
TGACTAAGCTGGCCCTTGGCCCGTGCCCCGTTCGGTCCGCCAAAAATTTC
CTGCGTATCGCCGAAGTTCAAGTGCAGCGGTTTGGCATCGATAAACGCAC
TCGTTCAACACCCAGCACCTTCATTTCGTCTTCCAGTCGCTTAACAAAAC
TAATCCTTCAATCCTCTAGAATGCATCTTATGTACTCTCTGGGCCCCGAT
GGCAAGCGGGTTTACACCCTCAAGAAGGTTACCGAGGACGGTCGCGTTAC
CAAGAGTGCTCACCCCGCCCGTTTCTCTCCCGATGACAAGTACTCTCGGC
ACCGTGTGACCCTCAAGAAGAGATACGGTCTGCTTATGACCCAGCAAGCC
GACAAGGAGGCTGCTAAGCTGTAAATGGGACCGCGCGTGACTAAGCTGGC
CCTTGGCCCGTGCCCCGTTCGGTCCGCCAAAAATTTCCTGCGTATCGCCG
AAGTTCAAGTGCAGCGGTTTGGCATCGATAAACGCACTCGTTCAACACCC
AGCACCTTCATTTCGTCTTCCAGTCGCTTAACAAAACTAATCCTTCAATC
CTCTAGAATGCATCTTATGTACTCTCTGGGCCCCGATGGCAAGCGGGTTT
ACACCCTCAAGAAGGTTACCGAGGACGGTCGCGTTACCAAGAGTGCTCAC
CCCGCCCGTTTCTCTCCCGATGACAAGTACTCTCGGCACCGTGTGACCCT
CAAGAAGAGATACGGTCTGCTTATGACCCAGCAAGCCGACAAGGAGGCTG
CTAAGCTGTAAATGGGACCGCGCGTGACTAAGCTGGCCCTTGGCCCGTGC
CCCGTTCGGTCCGCCAAAAATTTCCTGCGTATCGCCGAAGTTCAAGTGCA
GCGGTTTGGCATCGATAAACGCACTCGTTCAACACCCAGCACCTTCATTT
CGTCTTCCAGTCGCTTAACAAAACTAATCCTTCAATCCTCTAGAATGCAT
CTTATGTACTCTCTGGGCCCCGATGGCAAGCGGGTTTACACCCTCAAGAA
GGTTACCGAGGACGGTCGCGTTACCAAGAGTGCTCACCCCGCCCGTTTCT
CTCCCGATGACAAGTACTCTCGGCACCGTGTGACCCTCAAGAAGAGATAC
GGTCTGCTTATGACCCAGCAAGCCGACAAGGAGGCTGCTAAGCTGTAAAT
GGGACCGCGCGTGACTAAGCTGGCCCTTGGCCCGTGCCCCGTTCGGTCCG
CCAAAAATTTCCTGCGTATCGCCGAAGTTCAAGTGCAGCGGTTTGGCATC
GATAAACGCACTCGTTCAACACCCAGCACCTTCATTTCGTCTTCCAGTCG
CTTAACAAAACTAATCCTTCAATCCTCTAGAATGCATCTTATGTACTCTC
TGGGCCCCGATGGCAAGCGGGTTTACACCCTCAAGAAGGTTACCGAGGAC
GGTCGCGTTACCAAGAGTGCTCACCCCGCCCGTTTCTCTCCCGATGACAA
GTACTCTCGGCACCGTGTGACCCTCAAGAAGAGATACGGTCTGCTTATGA
CCCAGCAAGCCGACAAGGAGGCTGCTAAGCTGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0030515snoRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0042254ribosome biogenesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000688KJC3_000688Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000688-T1KJC3_000688-T1-proteinAspergillus niger KJC3polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000688-T1.exon1KJC3_000688-T1.exon1Aspergillus niger KJC3exon
KJC3_000688-T1.exon2KJC3_000688-T1.exon2Aspergillus niger KJC3exon
KJC3_000688-T1.exon3KJC3_000688-T1.exon3Aspergillus niger KJC3exon
KJC3_000688-T1.exon4KJC3_000688-T1.exon4Aspergillus niger KJC3exon
KJC3_000688-T1.exon5KJC3_000688-T1.exon5Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000688-T1.cdsKJC3_000688-T1.cdsAspergillus niger KJC3CDS


Properties
Property NameValue
DBxrefInterPro:IPR007264
DBxrefInterPro:IPR036756
DBxrefPFAM:PF04135
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:1571342..1571967 +
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